Cucsa.133120 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.133120
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Histone H1
Location	scaffold01037 : 908076 .. 909208 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGAATTTTCTCTCTCTAAAATATTTTCCTCTCCCTCTCTTCTAATCGATTCCATTTCCAATAATGTCTTCCGCCGCTGATTCCGTCATCATCTCCGATGCTCCCGCTGCAGCGGTGGCCCAGCCAGCTGAGAACGACTCCAAGGCTAAGAAAGCTGCGGCATCGAAAGCATCGAAGGCTAAGAAACCATCTGGTGCGAAGAAGGCTAGATCTTCTCCGACTCACCCTCCGTTCCTTCAGGTGTGTATGGATGATTGATCTTTGTTTTGATTGTTTATGGTTATTCCGATCGAGTTTTTACGTTTTGTTCTGATTGAATTTTGAAATTGTTTCTCTAGATGATTAGCGAAGCGATCGTTTCTCTGAAGGAGAGAACCGGCTCGAGTCAGTACGCCATTACGAAGTTCACTGAAGAGAAACACAAACAATTGCCTTCCAATTTCAGGAAGCTTTTGCTTGTTCATCTCAAAAAACTTGTCGCCGCTGAAAAACTCGTTAAGGTTAAGAACTCCTATAAGCTTCCATCGGCTCGTTCTATTCAAGCAAAAGCCGCAGCAGCAGCAGCACCACCAGTCACCGCCAAGAAGCCTGTAAGCTCAAAACTCAAAGCAGCAAGCATCAAGAAAGCCGCCGTTGCCAAATCGAAAGCCAAAACTGCTGCGAAACCTAAGCCGAAAGCTGTAGCGAAGCCGAAGCCGAAGACAGTTGCTAAATCCAAGACCGTCGCGAAACCAAAAACCGCCGCGAAGACGAAGGCAGCTGAGAAGGTTAAGAAGGTTGCCCCGAAGCCTAAACCAGCAGCCAAGGCAGCGAAAGTAGCGAAAACACTGTCGCGAACTTCGCCAGGAAAGAGAGCCGCACCGGCGACAAAGGCGAAGAAAGTAGCGGCGAAGAAGCCAAAGACGGTAAAGTCGCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGAATTATGTGTTTAGGGTTTTTGATTAATTTCTAGGGTTTTCTTATTAATAGTACGTAGCGATGTAAATTAGGGATATGATATGAGAGATGCAACCGTTCGTTGTTATACAATATTTTTATCAAATTTTAGTTTGGTAAATTCTCAATGGTCTATCTTCAAATCAGTCTTTTCTTTTGAGTG

mRNA sequence

TCGAATTTTCTCTCTCTAAAATATTTTCCTCTCCCTCTCTTCTAATCGATTCCATTTCCAATAATGTCTTCCGCCGCTGATTCCGTCATCATCTCCGATGCTCCCGCTGCAGCGGTGGCCCAGCCAGCTGAGAACGACTCCAAGGCTAAGAAAGCTGCGGCATCGAAAGCATCGAAGGCTAAGAAACCATCTGGTGCGAAGAAGGCTAGATCTTCTCCGACTCACCCTCCGTTCCTTCAGATGATTAGCGAAGCGATCGTTTCTCTGAAGGAGAGAACCGGCTCGAGTCAGTACGCCATTACGAAGTTCACTGAAGAGAAACACAAACAATTGCCTTCCAATTTCAGGAAGCTTTTGCTTGTTCATCTCAAAAAACTTGTCGCCGCTGAAAAACTCGTTAAGGTTAAGAACTCCTATAAGCTTCCATCGGCTCGTTCTATTCAAGCAAAAGCCGCAGCAGCAGCAGCACCACCAGTCACCGCCAAGAAGCCTGTAAGCTCAAAACTCAAAGCAGCAAGCATCAAGAAAGCCGCCGTTGCCAAATCGAAAGCCAAAACTGCTGCGAAACCTAAGCCGAAAGCTGTAGCGAAGCCGAAGCCGAAGACAGTTGCTAAATCCAAGACCGTCGCGAAACCAAAAACCGCCGCGAAGACGAAGGCAGCTGAGAAGGTTAAGAAGGTTGCCCCGAAGCCTAAACCAGCAGCCAAGGCAGCGAAAGTAGCGAAAACACTGTCGCGAACTTCGCCAGGAAAGAGAGCCGCACCGGCGACAAAGGCGAAGAAAGTAGCGGCGAAGAAGCCAAAGACGGTAAAGTCGCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGAATTATGTGTTTAGGGTTTTTGATTAATTTCTAGGGTTTTCTTATTAATAGTACGTAGCGATGTAAATTAGGGATATGATATGAGAGATGCAACCGTTCGTTGTTATACAATATTTTTATCAAATTTTAGTTTGGTAAATTCTCAATGGTCTATCTTCAAATCAGTCTTTTCTTTTGAGTG

Coding sequence (CDS)

ATGTCTTCCGCCGCTGATTCCGTCATCATCTCCGATGCTCCCGCTGCAGCGGTGGCCCAGCCAGCTGAGAACGACTCCAAGGCTAAGAAAGCTGCGGCATCGAAAGCATCGAAGGCTAAGAAACCATCTGGTGCGAAGAAGGCTAGATCTTCTCCGACTCACCCTCCGTTCCTTCAGATGATTAGCGAAGCGATCGTTTCTCTGAAGGAGAGAACCGGCTCGAGTCAGTACGCCATTACGAAGTTCACTGAAGAGAAACACAAACAATTGCCTTCCAATTTCAGGAAGCTTTTGCTTGTTCATCTCAAAAAACTTGTCGCCGCTGAAAAACTCGTTAAGGTTAAGAACTCCTATAAGCTTCCATCGGCTCGTTCTATTCAAGCAAAAGCCGCAGCAGCAGCAGCACCACCAGTCACCGCCAAGAAGCCTGTAAGCTCAAAACTCAAAGCAGCAAGCATCAAGAAAGCCGCCGTTGCCAAATCGAAAGCCAAAACTGCTGCGAAACCTAAGCCGAAAGCTGTAGCGAAGCCGAAGCCGAAGACAGTTGCTAAATCCAAGACCGTCGCGAAACCAAAAACCGCCGCGAAGACGAAGGCAGCTGAGAAGGTTAAGAAGGTTGCCCCGAAGCCTAAACCAGCAGCCAAGGCAGCGAAAGTAGCGAAAACACTGTCGCGAACTTCGCCAGGAAAGAGAGCCGCACCGGCGACAAAGGCGAAGAAAGTAGCGGCGAAGAAGCCAAAGACGGTAAAGTCGCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGA

Protein sequence

MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKKVAAKKPKTVKSPARKVQARKVKK*

Homology

[Close]

BLAST of Cucsa.133120 vs. Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.0e-57
Identity = 140/276 (50.72%), Postives = 166/276 (60.14%), Query Frame = 1


Query: 10  ISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEAIVSLK 69
           + +  AA      E +  AK   A K +KAKKP+  +K  ++PTHPP+ +MI +AIV+LK
Sbjct: 12  VVEEQAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLK 71

Query: 70  ERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAK 129
           ERTGSSQ+AITKF EEK K LPSNF+KLLL  LKK VA+EKLVKVKNSYKLPS     A 
Sbjct: 72  ERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYKLPSGSKPAAA 131

Query: 130 AAAAAAPPVTAK---------------KPVSSKLKAASIKKAAVAK--SKAKTAAKPKPK 189
           A  A   P  AK               KP +    AA  K AA AK  +KAK AAK KP 
Sbjct: 132 AVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPA 191

Query: 190 AVAKPKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAK--AAKVAKTLSRTSPGK 249
           A AKP  K   K+   AKPK A K KAA    K A KP   AK   AKVAKT +RT+P +
Sbjct: 192 AKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTTTAKVAKTATRTTPSR 251

Query: 250 RAAP-ATKAKKVAAKK--PKTVKSPARKVQARKVKK 264
           +AAP AT AKK   KK   K VKSPA+K   ++ +K
Sbjct: 252 KAAPKATPAKKEPVKKAPAKNVKSPAKKATPKRGRK 287

[Close]

BLAST of Cucsa.133120 vs. Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.8e-52
Identity = 137/275 (49.82%), Postives = 167/275 (60.73%), Query Frame = 1


Query: 2   SSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAK-KPSGAKKARSSPTHPPFLQM 61
           S AAD+ + S        +PA    K+KK   +KA+K   K +   K +++ +HP + +M
Sbjct: 14  SGAADTTVKSPEK-----KPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEM 73

Query: 62  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 121
           I +AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LVA+EKLVKVK S+K+
Sbjct: 74  IKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 133

Query: 122 PSARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 181
           PSARS     AA   P    KK  +   K      AAVA +KAK AA    K   KP  K
Sbjct: 134 PSARS-----AATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAA----KGTKKPAAK 193

Query: 182 TVAKSKTVAKPK---TAAKTK-----AAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKR- 241
            VAK+K  AKPK   TAAK K     A  K K VA KPK   + AK ++T +RTSPGK+ 
Sbjct: 194 VVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKV 253

Query: 242 AAPATK---AKKVAAKKPKTVKSPARKVQARKVKK 264
           AAPA K    KK  AK  K VKSPA++   RK KK
Sbjct: 254 AAPAKKVAVTKKAPAKSVK-VKSPAKRASTRKAKK 273

[Close]

BLAST of Cucsa.133120 vs. Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 201.1 bits (510), Expect = 1.6e-50
Identity = 138/265 (52.08%), Postives = 155/265 (58.49%), Query Frame = 1


Query: 5   ADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEA 64
           A  V  + AP    A  A  D+ A  AA + A+KAKK +  KK R+SPTH P+ +M+SEA
Sbjct: 2   ATDVTETPAPLVDAAPEAPADAPAAPAADANAAKAKKATAPKK-RASPTHLPYAEMVSEA 61

Query: 65  IVSLKERTGSSQYAITKFTEEKHK-QLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSA 124
           I SLKERTGSS YAI KF E+KHK +LP NFRKLL V LKKLVA  KL KVKNSYKL SA
Sbjct: 62  ITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSA 121

Query: 125 RSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKP--KPKT 184
                K  AA   P T  K           K  A AK KAKT AK KP    KP  KPK 
Sbjct: 122 TKPNPKPKAAPKKPKTGAK-----------KPKAAAKPKAKTPAKAKPATKPKPAAKPKA 181

Query: 185 VAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAK---AAKVAKTLSRTSPGKRAAPATKA 244
           V K KT AKPK  AK  A  K K    KPKP AK    AK AKT ++ +PGK+ APA KA
Sbjct: 182 VVKPKTPAKPK--AKPAAKAKPKTAGAKPKPLAKKAGRAKAAKTSAKDTPGKK-APAKKA 241

Query: 245 KKVAAKKPKTVKSPARKVQARKVKK 264
               +KK  T   P RK  +RK KK
Sbjct: 242 --APSKKAAT---PVRKAPSRKAKK 246

[Close]

BLAST of Cucsa.133120 vs. Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.6e-50
Identity = 140/253 (55.34%), Postives = 156/253 (61.66%), Query Frame = 1


Query: 10  ISDAPAAAVAQPAENDSKAK---KAAASKASKAKKPS-GAKKARSSPT--HPPFLQMISE 69
           ++D P +A   P   + K+K   KAAA K  K KK    AKK +S  T  HP F +MIS+
Sbjct: 1   MADTPVSAPVVPEVTERKSKRGTKAAAVKVPKEKKKVIAAKKPKSKGTSSHPSFFEMISD 60

Query: 70  AIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSA 129
           AI +LKERTGSSQYAI KF E+KHKQLPSNFRKLLL HLKKLVA+ KLVKVKNS+KLPSA
Sbjct: 61  AISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPSA 120

Query: 130 RSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPKTVA 189
           R        AA  P  AKKP   K K A+  K       AK  AKPK K  AK   KT A
Sbjct: 121 R--------AAPAPALAKKPTIPKPKVAAKPKT------AKIGAKPKAK--AKVAAKTKA 180

Query: 190 KSKTVAKPKTAAKTKAAEKVKKVAPKPKP-AAKAAKVAKTLSRTSPGKRAAPATKAKKVA 249
            +KTVAK   AAK KA     K A KPK  AAK AKVAKT +  SPGK+       K V 
Sbjct: 181 TTKTVAKKIPAAKPKA-----KTAGKPKTVAAKPAKVAKTAAVASPGKK-------KAVP 225

Query: 250 AKKPKTVKSPARK 256
            KK KTVKSPA K
Sbjct: 241 VKKVKTVKSPAGK 225

[Close]

BLAST of Cucsa.133120 vs. Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.5e-48
Identity = 129/257 (50.19%), Postives = 156/257 (60.70%), Query Frame = 1


Query: 18  VAQPAENDSKAKKAAASKASKAK--KPSGAKKARSSPTHPPFLQMISEAIVSLKERTGSS 77
           + +P   + +  KA   K  KAK  KP  A K R+  +HP + +MI +AIVSLKE+ GSS
Sbjct: 24  ITEPEVPEKEEPKAEVEKTKKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSS 83

Query: 78  QYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAKAAAAAA 137
           QYAI KF EEK KQLP+NF+KLLL +LKK VA+ KL+KVK S+KL +A            
Sbjct: 84  QYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAA------------ 143

Query: 138 PPVTAKKPVSSKLKAASIKKAAVAKS-KAKTAAKPKPKAVAKPKPKTVAKS------KTV 197
               AKKP  +K KA   K AA AKS KAK AAKPK KAV KPK  + AK+      K  
Sbjct: 144 ----AKKPAVAKPKA---KTAAKAKSVKAKPAAKPKAKAVVKPKVASKAKAVAAKPKKAA 203

Query: 198 AKPKT-AAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATK--AKKVAAK- 257
           AKPKT AAKTK      K   KPK   K AKVAKT  +T+PGK+ A   K  AKKV  K 
Sbjct: 204 AKPKTVAAKTKPTAAKPKAVVKPKSKVKPAKVAKTSVKTTPGKKVAAVKKVAAKKVPVKS 261

Query: 258 -KPKTVKSPARKVQARK 261
            K K+VKSP +KV  ++
Sbjct: 264 VKAKSVKSPVKKVSVKR 261

[Close]

BLAST of Cucsa.133120 vs. TrEMBL
Match: A0A0A0LLA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010270 PE=3 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 1.2e-118
Identity = 240/263 (91.25%), Postives = 240/263 (91.25%), Query Frame = 1


Query: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60
           MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM
Sbjct: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60

Query: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120
           ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL
Sbjct: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120

Query: 121 PSARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180
           PSARSIQAKAAAAAA PVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK
Sbjct: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180

Query: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKK 240
           TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAA                      K
Sbjct: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAA----------------------K 240

Query: 241 VAAKKPKTVKSPARKVQARKVKK 264
           VAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 VAAKKPKTVKSPARKVQARKVKK 241

[Close]

BLAST of Cucsa.133120 vs. TrEMBL
Match: A5BTS5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018553 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.0e-65
Identity = 160/295 (54.24%), Postives = 184/295 (62.37%), Query Frame = 1


Query: 3   SAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMIS 62
           SA + V+        V       SKAKKA A K  KAKKP+ AKK +S  THPPFL+MI+
Sbjct: 9   SAVEVVVDPPVTEPPVENQTGRKSKAKKAKAPKEPKAKKPA-AKKPKSPSTHPPFLEMIT 68

Query: 63  EAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPS 122
           EAIV+LKERTGSSQYAITKF EEKHK+LPSNFRKLLLVHLKKLVA+EKLVKVKNSYKLPS
Sbjct: 69  EAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKVKNSYKLPS 128

Query: 123 ARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPKTV 182
           +RS         AP   AKKP ++K K     K A A +K K AAKPKPKA  KPK    
Sbjct: 129 SRS---------APSKAAKKPAAAKPKPT---KPAKAPAKPKAAAKPKPKATTKPKAAAK 188

Query: 183 AKSKTV------AKPKTAAKTKAAEKVKKVA-------------------PKPKPAAKAA 242
           +K+  V      AKPK A K KAA +    A                   PK KPAA+ A
Sbjct: 189 SKAAPVKPKAAPAKPKAAVKPKAAPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPAARPA 248

Query: 243 KVAKTLSRTSPGKR---------AAPATKAKKVAAKKPKTVKSPARKVQARKVKK 264
           K A+T +RT+PGK+         AAPA K KK  AKKPK++KSPA+K  ARK KK
Sbjct: 249 KAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK 290

[Close]

BLAST of Cucsa.133120 vs. TrEMBL
Match: F6HVJ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00500 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.5e-65
Identity = 163/295 (55.25%), Postives = 184/295 (62.37%), Query Frame = 1


Query: 3   SAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMIS 62
           SA + V+        V       SKAKKA A K  KAKKP+ AKK +S  THPPFL+MI+
Sbjct: 9   SAVEVVVDPPVTEPPVENQTGRKSKAKKAKAPKEPKAKKPA-AKKPKSPSTHPPFLEMIT 68

Query: 63  EAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPS 122
           EAIV+LKERTGSSQYAITKF EEKHK+LPSNFRKLLLVHLKKLVA+EKLVKVKNSYKLPS
Sbjct: 69  EAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKVKNSYKLPS 128

Query: 123 ARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKP----- 182
           +RS         AP   AKKP ++K K     K A A +K K AAKPKPKA  KP     
Sbjct: 129 SRS---------APSKAAKKPAAAKPKPT---KPAKAPAKPKAAAKPKPKATTKPKAAAK 188

Query: 183 ------KPKTV-AKSKTVAKPK------------TAAKTKAAEKVK-KVAPKPKPAAKAA 242
                 KPK   AK K   KPK             AAK K   K K  V PK KPAA+ A
Sbjct: 189 SKAAPVKPKAAPAKPKAAVKPKAVPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPAARPA 248

Query: 243 KVAKTLSRTSPGKR---------AAPATKAKKVAAKKPKTVKSPARKVQARKVKK 264
           K A+T +RT+PGK+         AAPA K KK  AKKPK++KSPA+K  ARK KK
Sbjct: 249 KAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK 290

[Close]

BLAST of Cucsa.133120 vs. TrEMBL
Match: F6GXM8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00730 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.2e-62
Identity = 149/281 (53.02%), Postives = 179/281 (63.70%), Query Frame = 1


Query: 1   MSSAADSVIISDAPAAAVAQPAENDS--KAKKAAASKASKAKKPSGAKKARSSPTHPPFL 60
           M+S   +V +        A+PAE +   KA K   +K  KAKKP+GAKK RS PTHPP++
Sbjct: 1   MASEEPTVAVEPVAEPEAAEPAEENPAPKAAKTKKAKEPKAKKPAGAKKPRSPPTHPPYI 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSY 120
           +MI+EAIV+LKE++GSSQYAI KF EEKHKQLP NF+KLLL+HLKK VAA KLVKV+ SY
Sbjct: 61  EMITEAIVALKEKSGSSQYAIAKFIEEKHKQLPPNFKKLLLIHLKKFVAAGKLVKVRGSY 120

Query: 121 KLPSARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPK 180
           KLP +R    K   AA      KK V++K K A+  K A      K  AKPK    + PK
Sbjct: 121 KLPPSRPSAPKPTGAAP---AKKKAVATKPKTAAKPKEAKNTKAKKAPAKPK---ASVPK 180

Query: 181 PKTVAKSKTVAKPKTA-------AKTKAAEKVKKVA-PKPKPAAKAAKVAKTLSRTSPGK 240
           PK  AK+K  AKPK A       AK KAA K K V  PKPKP  K AK A+T +RT+PGK
Sbjct: 181 PKAAAKTKAAAKPKVAPAKPKVPAKPKAAAKTKTVTKPKPKPKEKPAKAARTSTRTTPGK 240

Query: 241 RAAP------ATKAKKVAAK--KPKTVKSPARKVQARKVKK 264
           +AAP       T  KK  AK  KPK+VKSPA+K  A+K KK
Sbjct: 241 KAAPPKPALKKTPVKKAPAKSVKPKSVKSPAKKAAAKKAKK 275

[Close]

BLAST of Cucsa.133120 vs. TrEMBL
Match: A0A059A6T5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03300 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.8e-61
Identity = 148/283 (52.30%), Postives = 175/283 (61.84%), Query Frame = 1


Query: 10  ISDAPAAAVAQPAENDS--KAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEAIVS 69
           +  AP AAV + A+ +   KA K+  +K  KAKKP+ AKK R+ P+HPP+ +MI +AI +
Sbjct: 10  VEPAPDAAVPEAADENPAPKAGKSKKAKEPKAKKPAAAKKPRNPPSHPPYEEMIKDAIAT 69

Query: 70  LKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQ 129
           LKE++GSSQYAI KF EEKHKQLP NFRKLLL HLKKLV + K+ KVK S+KLP  +S  
Sbjct: 70  LKEKSGSSQYAIAKFNEEKHKQLPPNFRKLLLFHLKKLVGSGKITKVKGSFKLPPGKSSA 129

Query: 130 AKAAAAAAPP--VTAKKPVSSKLKAA---------------SIKKAAVAKSKAKTAAKPK 189
           A AAA AAP     AKKP  SK  A                S K AA A +K K AAKPK
Sbjct: 130 AAAAAVAAPKPAAVAKKPAKSKAAAKPKAKAKAPAKPKETKSAKPAAKATAKPKAAAKPK 189

Query: 190 PKA-VAKPKPKTVAKSKTVAKPK----TAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSR 249
           PKA  AKPK    A     AKPK     AAK K +    K   KPKP  K AK ++T +R
Sbjct: 190 PKAPAAKPKASAAAAKSKAAKPKPKPAAAAKPKPSAPKAKAPAKPKPKEKPAKASRTSAR 249

Query: 250 TSPGKRAAPATK---AKKVAAK--KPKTVKSPARKVQARKVKK 264
           TSPGK+ AP  K   AKK +AK  KPK+VKSP RK  ARK KK
Sbjct: 250 TSPGKKVAPPKKAPAAKKTSAKTVKPKSVKSPTRKPSARKAKK 292

[Close]

BLAST of Cucsa.133120 vs. TAIR10
Match: AT2G30620.1 (AT2G30620.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 206.1 bits (523), Expect = 2.7e-53
Identity = 137/275 (49.82%), Postives = 167/275 (60.73%), Query Frame = 1


Query: 2   SSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAK-KPSGAKKARSSPTHPPFLQM 61
           S AAD+ + S        +PA    K+KK   +KA+K   K +   K +++ +HP + +M
Sbjct: 14  SGAADTTVKSPEK-----KPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEM 73

Query: 62  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 121
           I +AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LVA+EKLVKVK S+K+
Sbjct: 74  IKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 133

Query: 122 PSARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 181
           PSARS     AA   P    KK  +   K      AAVA +KAK AA    K   KP  K
Sbjct: 134 PSARS-----AATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAA----KGTKKPAAK 193

Query: 182 TVAKSKTVAKPK---TAAKTK-----AAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKR- 241
            VAK+K  AKPK   TAAK K     A  K K VA KPK   + AK ++T +RTSPGK+ 
Sbjct: 194 VVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKV 253

Query: 242 AAPATK---AKKVAAKKPKTVKSPARKVQARKVKK 264
           AAPA K    KK  AK  K VKSPA++   RK KK
Sbjct: 254 AAPAKKVAVTKKAPAKSVK-VKSPAKRASTRKAKK 273

[Close]

BLAST of Cucsa.133120 vs. TAIR10
Match: AT1G06760.1 (AT1G06760.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 192.2 bits (487), Expect = 4.1e-49
Identity = 128/267 (47.94%), Postives = 158/267 (59.18%), Query Frame = 1


Query: 11  SDAPAAAVAQPAENDSKAKKAAASKASKAKKP-SGAKKARSSPTHPPFLQMISEAIVSLK 70
           +DAP    A   +  +K +K    K  K KK  + A K R+  +HP + +MI +AIV+LK
Sbjct: 18  ADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTLK 77

Query: 71  ERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAK 130
           ERTGSSQYAI KF EEK K+LP  FRKLLL++LK+LVA+ KLVKVK S+KLPSA      
Sbjct: 78  ERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSA------ 137

Query: 131 AAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPKTVAKSKTVA 190
           +A A++P   A+K   +K K A++   AV K+K K AA  K K     KPKT A  K  A
Sbjct: 138 SAKASSPKAAAEKSAPAKKKPATV---AVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTA 197

Query: 191 KPK---TAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATK-------AK 250
           K K       T AA K K V  KPK  A+ AK AKT   TSP K+A  ATK        K
Sbjct: 198 KAKAKPVPRATAAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATKK 257

Query: 251 KVAAK---KPKTVKSPARKVQARKVKK 264
           K   K   KPKTVKSPA++  +R VKK
Sbjct: 258 KTPVKKVVKPKTVKSPAKRASSR-VKK 274

[Close]

BLAST of Cucsa.133120 vs. TAIR10
Match: AT2G18050.1 (AT2G18050.1 histone H1-3)

HSP 1 Score: 92.4 bits (228), Expect = 4.4e-19
Identity = 63/171 (36.84%), Postives = 89/171 (52.05%), Query Frame = 1


Query: 40  KKPSGAKKARS--SPTHPPFLQMISEAIVSLKERTGSSQYAITKFTEEKHKQ-LPSNFRK 99
           KK   AKK R   + THPP+ QMI EA++ LKE+ GSS YAI K  EEKHK  LP +FRK
Sbjct: 8   KKTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRK 67

Query: 100 LLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKA 159
            L + LK  VA  KLVK++ SYKL     +           +T ++   +K K    +  
Sbjct: 68  TLSLQLKNSVAKGKLVKIRASYKLSDTTKM-----------ITRQQDKKNK-KNMKQEDK 127

Query: 160 AVAKSKAKTAAKPKPKAVAKPKPKTVAKSKTVAKPKTAAKTKAAEKVKKVA 208
            + K    ++ +PK K V+  K +   K K   +PK+   +   +K  K +
Sbjct: 128 EITKRTRSSSTRPK-KTVSVNKQEKKRKVKKARQPKSIKSSVGKKKAMKAS 165

[Close]

BLAST of Cucsa.133120 vs. TAIR10
Match: AT3G18035.1 (AT3G18035.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-13
Identity = 60/219 (27.40%), Postives = 92/219 (42.01%), Query Frame = 1


Query: 51  SPTHPPFLQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEK 110
           S  HPP+ +MI  AI +L E  GSS+ AI+++ E  +  L S    LL  HLK L  +  
Sbjct: 62  SMPHPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGV 121

Query: 111 LVKVKNSYKLPSARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPK 170
           L  VK SYK+  + +  A  A AAA          S++  +S     +A   A    K  
Sbjct: 122 LSMVKKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSS-NNDPMASGSASQPLKRG 181

Query: 171 PKAVAKPKPKTVAKSKTVAKPKTAAKTKA-----AEKVKKVAPKPKPAAKAAK--VAKTL 230
                KPKP++  +      P    +         ++V+   P P P  ++AK    +  
Sbjct: 182 RGRPPKPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPR 241

Query: 231 SRTSPGKRAAPATKAKKVAAKKPKTVKSPARKVQARKVK 263
              S     AP  +A  +A    +  + P R+   R+ K
Sbjct: 242 KNGSAAPATAPIVQASVMAGIMKRRGRPPGRRAAGRQRK 279

[Close]

BLAST of Cucsa.133120 vs. TAIR10
Match: AT1G14900.1 (AT1G14900.1 high mobility group A)

HSP 1 Score: 68.9 bits (167), Expect = 5.2e-12
Identity = 50/179 (27.93%), Postives = 77/179 (43.02%), Query Frame = 1


Query: 55  PPFLQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKV 114
           PP+ QMI EAI SL ++ G ++  I K  E   + LP +   LL  HL ++    +L+ V
Sbjct: 24  PPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMV 83

Query: 115 KNSYKLP-----------------SARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAA 174
           KN+Y  P                 +     A AAA  A  V +  P  S+ +    K  +
Sbjct: 84  KNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKDPS 143

Query: 175 VAKSKAKTAAKPKPKAVAKPKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKA 217
               +       +P+     +P+T   S+TVA P+ AA+     + +   PK KP   A
Sbjct: 144 EPPQEKVITGSGRPRGRPPKRPRT--DSETVAAPEPAAQATGERRGRGRPPKVKPTVVA 200

[Close]

BLAST of Cucsa.133120 vs. NCBI nr
Match: gi|449442955|ref|XP_004139246.1| (PREDICTED: histone H1-like [Cucumis sativus])

HSP 1 Score: 487.6 bits (1254), Expect = 1.3e-134
Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 1


Query: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60
           MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM
Sbjct: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60

Query: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120
           ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL
Sbjct: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120

Query: 121 PSARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180
           PSARSIQAKAAAAAA PVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK
Sbjct: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180

Query: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKK 240
           TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKK
Sbjct: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKK 240

Query: 241 VAAKKPKTVKSPARKVQARKVKK 264
           VAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 VAAKKPKTVKSPARKVQARKVKK 263

[Close]

BLAST of Cucsa.133120 vs. NCBI nr
Match: gi|659070684|ref|XP_008456174.1| (PREDICTED: histone H1-like [Cucumis melo])

HSP 1 Score: 444.5 bits (1142), Expect = 1.3e-121
Identity = 246/267 (92.13%), Postives = 249/267 (93.26%), Query Frame = 1


Query: 1   MSSAADSVIISDAPAAA---VAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPF 60
           MSSAAD V+ SDAPAAA   VAQPAENDSK+KKAAASKASKAKKPSGAKKARSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNS 120
           LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSIQAKAAAAAAPPVTAKKPVSSKLKA-ASIKKAAVAKSKAKTAAKPKPKAVAK 180
           YKLPSARSIQAKAAAAA  PV  KKPVSSKLKA ASIKK AVAK KAKTAAK KPKAVAK
Sbjct: 121 YKLPSARSIQAKAAAAA--PVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKSKPKAVAK 180

Query: 181 PKPKTVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPAT 240
           PKPKTV KSKTVAKPKTAAKTKAAEKVKKVAPKPK  AKA KVAKTLSRTSPGKRAAPA 
Sbjct: 181 PKPKTVTKSKTVAKPKTAAKTKAAEKVKKVAPKPKAGAKATKVAKTLSRTSPGKRAAPAA 240

Query: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 264
           KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of Cucsa.133120 vs. NCBI nr
Match: gi|700205672|gb|KGN60791.1| (hypothetical protein Csa_2G010270 [Cucumis sativus])

HSP 1 Score: 434.1 bits (1115), Expect = 1.7e-118
Identity = 240/263 (91.25%), Postives = 240/263 (91.25%), Query Frame = 1


Query: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60
           MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM
Sbjct: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60

Query: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120
           ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL
Sbjct: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120

Query: 121 PSARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180
           PSARSIQAKAAAAAA PVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK
Sbjct: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180

Query: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKK 240
           TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAA                      K
Sbjct: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAA----------------------K 240

Query: 241 VAAKKPKTVKSPARKVQARKVKK 264
           VAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 VAAKKPKTVKSPARKVQARKVKK 241

[Close]

BLAST of Cucsa.133120 vs. NCBI nr
Match: gi|147822817|emb|CAN77274.1| (hypothetical protein VITISV_018553 [Vitis vinifera])

HSP 1 Score: 257.3 bits (656), Expect = 2.9e-65
Identity = 160/295 (54.24%), Postives = 184/295 (62.37%), Query Frame = 1


Query: 3   SAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMIS 62
           SA + V+        V       SKAKKA A K  KAKKP+ AKK +S  THPPFL+MI+
Sbjct: 9   SAVEVVVDPPVTEPPVENQTGRKSKAKKAKAPKEPKAKKPA-AKKPKSPSTHPPFLEMIT 68

Query: 63  EAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPS 122
           EAIV+LKERTGSSQYAITKF EEKHK+LPSNFRKLLLVHLKKLVA+EKLVKVKNSYKLPS
Sbjct: 69  EAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKVKNSYKLPS 128

Query: 123 ARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPKTV 182
           +RS         AP   AKKP ++K K     K A A +K K AAKPKPKA  KPK    
Sbjct: 129 SRS---------APSKAAKKPAAAKPKPT---KPAKAPAKPKAAAKPKPKATTKPKAAAK 188

Query: 183 AKSKTV------AKPKTAAKTKAAEKVKKVA-------------------PKPKPAAKAA 242
           +K+  V      AKPK A K KAA +    A                   PK KPAA+ A
Sbjct: 189 SKAAPVKPKAAPAKPKAAVKPKAAPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPAARPA 248

Query: 243 KVAKTLSRTSPGKR---------AAPATKAKKVAAKKPKTVKSPARKVQARKVKK 264
           K A+T +RT+PGK+         AAPA K KK  AKKPK++KSPA+K  ARK KK
Sbjct: 249 KAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK 290

[Close]

BLAST of Cucsa.133120 vs. NCBI nr
Match: gi|225463948|ref|XP_002270211.1| (PREDICTED: histone H1 [Vitis vinifera])

HSP 1 Score: 256.5 bits (654), Expect = 5.0e-65
Identity = 163/295 (55.25%), Postives = 184/295 (62.37%), Query Frame = 1


Query: 3   SAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMIS 62
           SA + V+        V       SKAKKA A K  KAKKP+ AKK +S  THPPFL+MI+
Sbjct: 9   SAVEVVVDPPVTEPPVENQTGRKSKAKKAKAPKEPKAKKPA-AKKPKSPSTHPPFLEMIT 68

Query: 63  EAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPS 122
           EAIV+LKERTGSSQYAITKF EEKHK+LPSNFRKLLLVHLKKLVA+EKLVKVKNSYKLPS
Sbjct: 69  EAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKVKNSYKLPS 128

Query: 123 ARSIQAKAAAAAAPPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKP----- 182
           +RS         AP   AKKP ++K K     K A A +K K AAKPKPKA  KP     
Sbjct: 129 SRS---------APSKAAKKPAAAKPKPT---KPAKAPAKPKAAAKPKPKATTKPKAAAK 188

Query: 183 ------KPKTV-AKSKTVAKPK------------TAAKTKAAEKVK-KVAPKPKPAAKAA 242
                 KPK   AK K   KPK             AAK K   K K  V PK KPAA+ A
Sbjct: 189 SKAAPVKPKAAPAKPKAAVKPKAVPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPAARPA 248

Query: 243 KVAKTLSRTSPGKR---------AAPATKAKKVAAKKPKTVKSPARKVQARKVKK 264
           K A+T +RT+PGK+         AAPA K KK  AKKPK++KSPA+K  ARK KK
Sbjct: 249 KAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK 290

The following BLAST results are available for this feature:

BLAST of Cucsa.133120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H1_SOLLC	1.0e-57	50.72	Histone H1 OS=Solanum lycopersicum PE=3 SV=1	[more]
H12_ARATH	4.8e-52	49.82	Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1	[more]
H1_MAIZE	1.6e-50	52.08	Histone H1 OS=Zea mays PE=2 SV=2	[more]
H1_EUPES	1.6e-50	55.34	Histone H1 OS=Euphorbia esula PE=2 SV=1	[more]
H1_PEA	1.5e-48	50.19	Histone H1 OS=Pisum sativum PE=2 SV=1	[more]

BLAST of Cucsa.133120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLA4_CUCSA	1.2e-118	91.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010270 PE=3 SV=1	[more]
A5BTS5_VITVI	2.0e-65	54.24	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018553 PE=3 SV=1	[more]
F6HVJ1_VITVI	3.5e-65	55.25	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00500 PE=3 SV=...	[more]
F6GXM8_VITVI	1.2e-62	53.02	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00730 PE=3 SV=...	[more]
A0A059A6T5_EUCGR	6.8e-61	52.30	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03300 PE=3 SV=1	[more]

BLAST of Cucsa.133120 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30620.1	2.7e-53	49.82	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	4.1e-49	47.94	winged-helix DNA-binding transcription factor family protein	[more]
AT2G18050.1	4.4e-19	36.84	histone H1-3	[more]
AT3G18035.1	2.8e-13	27.40	winged-helix DNA-binding transcription factor family protein	[more]
AT1G14900.1	5.2e-12	27.93	high mobility group A	[more]

BLAST of Cucsa.133120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442955\|ref\|XP_004139246.1\|	1.3e-134	99.62	PREDICTED: histone H1-like [Cucumis sativus]	[more]
gi\|659070684\|ref\|XP_008456174.1\|	1.3e-121	92.13	PREDICTED: histone H1-like [Cucumis melo]	[more]
gi\|700205672\|gb\|KGN60791.1\|	1.7e-118	91.25	hypothetical protein Csa_2G010270 [Cucumis sativus]	[more]
gi\|147822817\|emb\|CAN77274.1\|	2.9e-65	54.24	hypothetical protein VITISV_018553 [Vitis vinifera]	[more]
gi\|225463948\|ref\|XP_002270211.1\|	5.0e-65	55.25	PREDICTED: histone H1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005818	Histone_H1/H5_H15
IPR005819	Histone_H5
IPR011991	Winged helix-turn-helix DNA-binding domain

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.133120.1	Cucsa.133120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 54..120 score: 2.0
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 51..117 score: 4.7
IPR005818	Linker histone H1/H5, domain H15	PROFILE	PS51504	H15	coord: 53..122 score: 28
IPR005819	Histone H5	PRINTS	PR00624	HISTONEH5	coord: 186..203 score: 8.3E-13coord: 67..84 score: 8.3E-13coord: 208..227 score: 8.3E-13coord: 40..61 score: 8.3E-13coord: 148..162 score: 8.3
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 50..123 score: 2.2
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 50..131 score: 9.8
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 7..260 score: 5.2
None	No IPR available	PANTHER	PTHR11467:SF54	SUBFAMILY NOT NAMED	coord: 7..260 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.133120	Cla019793	Watermelon (97103) v1	cgywmB223
Cucsa.133120	Csa2G010270	Cucumber (Chinese Long) v2	cgycuB184
Cucsa.133120	MELO3C004394	Melon (DHL92) v3.5.1	cgymeB216
Cucsa.133120	ClCG02G016780	Watermelon (Charleston Gray)	cgywcgB218
Cucsa.133120	CSPI02G02820	Wild cucumber (PI 183967)	cgycpiB187
Cucsa.133120	CmaCh12G011310	Cucurbita maxima (Rimu)	cgycmaB0364
Cucsa.133120	CmaCh05G012130	Cucurbita maxima (Rimu)	cgycmaB0365
Cucsa.133120	CmoCh05G012360	Cucurbita moschata (Rifu)	cgycmoB0362
Cucsa.133120	CmoCh12G011510	Cucurbita moschata (Rifu)	cgycmoB0359
Cucsa.133120	Lsi11G004310	Bottle gourd (USVL1VR-Ls)	cgylsiB205
Cucsa.133120	Cp4.1LG00g04300	Cucurbita pepo (Zucchini)	cgycpeB0350
Cucsa.133120	Cp4.1LG11g09850	Cucurbita pepo (Zucchini)	cgycpeB0351
Cucsa.133120	Cp4.1LG07g09790	Cucurbita pepo (Zucchini)	cgycpeB0356
Cucsa.133120	MELO3C004394.2	Melon (DHL92) v3.6.1	cgymedB213
Cucsa.133120	CsaV3_2G003970	Cucumber (Chinese Long) v3	cgycucB190
Cucsa.133120	Cla97C02G042560	Watermelon (97103) v2	cgywmbB213
Cucsa.133120	Bhi06G001535	Wax gourd	cgywgoB251
Cucsa.133120	Carg22992	Silver-seed gourd	carcgyB1188
Cucsa.133120	Carg17604	Silver-seed gourd	carcgyB0804
Cucsa.133120	Carg08984	Silver-seed gourd	carcgyB0883

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.133120	Melon (DHL92) v3.6.1	cgymedB215
Cucsa.133120	Cucumber (Chinese Long) v3	cgycucB191
Cucsa.133120	Watermelon (97103) v2	cgywmbB214
Cucsa.133120	Cucumber (Gy14) v1	cgycgyB079
Cucsa.133120	Watermelon (97103) v1	cgywmB221
Cucsa.133120	Bottle gourd (USVL1VR-Ls)	cgylsiB208