CmaCh12G011310 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G011310
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionHistone
LocationCma_Chr12 : 8918423 .. 8919796 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTGCAAACGTTTCGAGTTCGAGATTCTAATCGACTCCGATCATGGCTTCTGCCGCCGATCCCGTTGTCCCCTCTGACGCGCCTGCTGCCGCTGTGGCGGTGGAGAACAATGCGAAGTCGAAAAAAACTAAAGCCTCTAAAGATTCGAAGGCTAAGAAATTATCTGGTGCGAAGAAGACCAAATCATCGCCGACTCATCCTCCTTTCTTTCGGGTATTTGCAATTTGTCTATATTCTGATCAGTAATGCTCGTTTGCTTTTGAATAATTTTTTCTGATCGGATTCTGAAATTGTTCTGAAGATGATTAGCGAAGCGATCGTATCGCTGAAAGAGAGGACAGGCTCGAGTCAGTACGCCATTACTAAGTTCAGCGAAGAGAAGCACAAGCTATTGCCGTCGAATTTTAGGAAGCTCTTGCTTGTTCATTTGAAGAAGCTTGTTTCCGCTGATAAACTCGTTAAGGTCAAGAACTCTTACAAGCTTCCATCGGCGCGCTCTGTCCAGCAGAAATCTTCATCCGCGCCTGTCGTCGCTAAGAAAACAACGATCTCAAAGCTTAAGGCAGCCGCAAGTGTGAAGAAGGCGGCCGCTGTTGCTAAACCGAAGGCGAAAACTGCTGTGAAACCTAAGCCAAATGGCGTGGTGAAGCCGAAGACGGTCGCAAAATCCAAGGTCGTCCAGAAGCCAAAGGCCGCCGCTGTGGCCAAGCCTAAGGCGGCAGAGAAGGTGAAGAAGGTCGCTCCAAAGCCTAAACCTAAATCAAAGCCTTCTAAAGTTGCCAAAACGTTGTCGCGAACATCGCCAGGAAAGAGAGTCGCACCAGCGACGAAGCCGAAAAAGGTAGCGGTGAAGAAGTCAAAGACAGTAAAGTCGCCGACGAGGAAATTGCTGGCCAGAAAAGTCAAGAAATGAATCGTTTAGGGTTTTGATCGATTTCTAGGGTTTGTTACTACTTACTACTCTCAGTTCGTCGCAATGTAAATTAGGGCGACGAGGTTGCAATCACACTAATTTTATTTCAATTCGACGGTTTATCAAATTAATCCTCCTTCTCTGTGTTCTTCAGAGAGTGATTTCCTCTTGATATTTCATAGGGCTGAGATTCTGTGATGAATTATTACAGAGACGAGTTTGAAGCTTCGAGTGCACAGCTTCAATGGCGGATTTCTCCATTTACAGAAGCTTTGTTTCTTTCGCATAACCGCCAATTTCGTGCCTTATCCGTGGGACGTCGTTTCGAAATCTGTATTTCGCACGTGCGTATGCCACGCTGGCAAGAGCTACGGCTTGTGGGTTTTTTTTAATTAAAAAAATTAATGGACTTGGAAGGAATTTGAATTTATTTTTTTTTTGGCCAAAAATAAAACGGAA

mRNA sequence

CTTCTGCAAACGTTTCGAGTTCGAGATTCTAATCGACTCCGATCATGGCTTCTGCCGCCGATCCCGTTGTCCCCTCTGACGCGCCTGCTGCCGCTGTGGCGGTGGAGAACAATGCGAAGTCGAAAAAAACTAAAGCCTCTAAAGATTCGAAGGCTAAGAAATTATCTGGTGCGAAGAAGACCAAATCATCGCCGACTCATCCTCCTTTCTTTCGGATGATTAGCGAAGCGATCGTATCGCTGAAAGAGAGGACAGGCTCGAGTCAGTACGCCATTACTAAGTTCAGCGAAGAGAAGCACAAGCTATTGCCGTCGAATTTTAGGAAGCTCTTGCTTGTTCATTTGAAGAAGCTTGTTTCCGCTGATAAACTCGTTAAGGTCAAGAACTCTTACAAGCTTCCATCGGCGCGCTCTGTCCAGCAGAAATCTTCATCCGCGCCTGTCGTCGCTAAGAAAACAACGATCTCAAAGCTTAAGGCAGCCGCAAGTGTGAAGAAGGCGGCCGCTGTTGCTAAACCGAAGGCGAAAACTGCTGTGAAACCTAAGCCAAATGGCGTGGTGAAGCCGAAGACGGTCGCAAAATCCAAGGTCGTCCAGAAGCCAAAGGCCGCCGCTGTGGCCAAGCCTAAGGCGGCAGAGAAGGTGAAGAAGGTCGCTCCAAAGCCTAAACCTAAATCAAAGCCTTCTAAAGTTGCCAAAACGTTGTCGCGAACATCGCCAGGAAAGAGAGTCGCACCAGCGACGAAGCCGAAAAAGGTAGCGGTGAAGAAGTCAAAGACAGTAAAGTCGCCGACGAGGAAATTGCTGGCCAGAAAAGTCAAGAAATGAATCGTTTAGGGTTTTGATCGATTTCTAGGGTTTGTTACTACTTACTACTCTCAGTTCGTCGCAATGTAAATTAGGGCGACGAGGTTGCAATCACACTAATTTTATTTCAATTCGACGGTTTATCAAATTAATCCTCCTTCTCTGTGTTCTTCAGAGAGTGATTTCCTCTTGATATTTCATAGGGCTGAGATTCTGTGATGAATTATTACAGAGACGAGTTTGAAGCTTCGAGTGCACAGCTTCAATGGCGGATTTCTCCATTTACAGAAGCTTTGTTTCTTTCGCATAACCGCCAATTTCGTGCCTTATCCGTGGGACGTCGTTTCGAAATCTGTATTTCGCACGTGCGTATGCCACGCTGGCAAGAGCTACGGCTTGTGGGTTTTTTTTAATTAAAAAAATTAATGGACTTGGAAGGAATTTGAATTTATTTTTTTTTTGGCCAAAAATAAAACGGAA

Coding sequence (CDS)

ATGGCTTCTGCCGCCGATCCCGTTGTCCCCTCTGACGCGCCTGCTGCCGCTGTGGCGGTGGAGAACAATGCGAAGTCGAAAAAAACTAAAGCCTCTAAAGATTCGAAGGCTAAGAAATTATCTGGTGCGAAGAAGACCAAATCATCGCCGACTCATCCTCCTTTCTTTCGGATGATTAGCGAAGCGATCGTATCGCTGAAAGAGAGGACAGGCTCGAGTCAGTACGCCATTACTAAGTTCAGCGAAGAGAAGCACAAGCTATTGCCGTCGAATTTTAGGAAGCTCTTGCTTGTTCATTTGAAGAAGCTTGTTTCCGCTGATAAACTCGTTAAGGTCAAGAACTCTTACAAGCTTCCATCGGCGCGCTCTGTCCAGCAGAAATCTTCATCCGCGCCTGTCGTCGCTAAGAAAACAACGATCTCAAAGCTTAAGGCAGCCGCAAGTGTGAAGAAGGCGGCCGCTGTTGCTAAACCGAAGGCGAAAACTGCTGTGAAACCTAAGCCAAATGGCGTGGTGAAGCCGAAGACGGTCGCAAAATCCAAGGTCGTCCAGAAGCCAAAGGCCGCCGCTGTGGCCAAGCCTAAGGCGGCAGAGAAGGTGAAGAAGGTCGCTCCAAAGCCTAAACCTAAATCAAAGCCTTCTAAAGTTGCCAAAACGTTGTCGCGAACATCGCCAGGAAAGAGAGTCGCACCAGCGACGAAGCCGAAAAAGGTAGCGGTGAAGAAGTCAAAGACAGTAAAGTCGCCGACGAGGAAATTGCTGGCCAGAAAAGTCAAGAAATGA

Protein sequence

MASAADPVVPSDAPAAAVAVENNAKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRMISEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKLPSARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVAVKKSKTVKSPTRKLLARKVKK
Homology
[Close]
BLAST of CmaCh12G011310 vs. Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.0e-39
Identity = 140/276 (50.72%), Postives = 168/276 (60.87%), Query Frame = 1 

Query: 8   VVPSDAPAAAVAVENNAKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRMISEAIVSLK 67
           VV   A    V  E N  +K  KA K++KAKK +  +K  ++PTHPP+F MI +AIV+LK
Sbjct: 12  VVEEQAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLK 71

Query: 68  ERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKLPSARSVQQK 127
           ERTGSSQ+AITKF EEK K LPSNF+KLLL  LKK V+++KLVKVKNSYKLPS       
Sbjct: 72  ERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYKLPSGSKPAAA 131

Query: 128 SSSA---PVVAKKTTISKLKAAASVK-KAAAVAKP--------KAKTAVKPKPNGVVKPK 187
           +  A   P  AK    +K KAA   K K AA AKP        KAK A K KP    KP 
Sbjct: 132 AVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPA 191

Query: 188 TVAKSKVVQKPKAAAVAKPKAAEKVK------KVAPKP--KPKSKPSKVAKTLSRTSPGK 247
             AK     KPKAAA AKPKAA K K      K A KP  K K+  +KVAKT +RT+P +
Sbjct: 192 AKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTTTAKVAKTATRTTPSR 251

Query: 248 RVAP-ATKPKKVAVKK--SKTVKSPTRKLLARKVKK 261
           + AP AT  KK  VKK  +K VKSP +K   ++ +K
Sbjct: 252 KAAPKATPAKKEPVKKAPAKNVKSPAKKATPKRGRK 287

[Close]
BLAST of CmaCh12G011310 vs. Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.4e-37
Identity = 138/273 (50.55%), Postives = 167/273 (61.17%), Query Frame = 1 

Query: 2   ASAADPVV--PSDAPAAAVAVENNAKSKKTKASKDSKAK-KLSGAKKTKSSPTHPPFFRM 61
           + AAD  V  P   PAA        KSKKT  +K +K   K +   K K++ +HP +  M
Sbjct: 14  SGAADTTVKSPEKKPAA-----KGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEM 73

Query: 62  ISEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKL 121
           I +AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LV+++KLVKVK S+K+
Sbjct: 74  IKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 133

Query: 122 PSARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKP--KT 181
           PSARS      +APV  K T ++K K     K AAAVA  KAK A K    G  KP  K 
Sbjct: 134 PSARSAATPKPAAPVKKKATVVAKPKG----KVAAAVAPAKAKAAAK----GTKKPAAKV 193

Query: 182 VAKSKVVQKPKA-AAVAKPK-----AAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVA 241
           VAK+KV  KPKA    AKPK     A  K K VA KPK K +P+K ++T +RTSPGK+VA
Sbjct: 194 VAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVA 253

Query: 242 PATKPKKVAVK---KSKTVKSPTRKLLARKVKK 261
              K   V  K   KS  VKSP ++   RK KK
Sbjct: 254 APAKKVAVTKKAPAKSVKVKSPAKRASTRKAKK 273

[Close]
BLAST of CmaCh12G011310 vs. Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.2e-36
Identity = 127/247 (51.42%), Postives = 144/247 (58.30%), Query Frame = 1 

Query: 10  PSDAPAAAVAVENNAK--SKKTKASKDSKAKKLSGAKKTKSSPT--HPPFFRMISEAIVS 69
           P  AP      E  +K  +K        + KK+  AKK KS  T  HP FF MIS+AI +
Sbjct: 5   PVSAPVVPEVTERKSKRGTKAAAVKVPKEKKKVIAAKKPKSKGTSSHPSFFEMISDAIST 64

Query: 70  LKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKLPSARSVQ 129
           LKERTGSSQYAI KF E+KHK LPSNFRKLLL HLKKLV++ KLVKVKNS+KLPSAR+  
Sbjct: 65  LKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPSARA-- 124

Query: 130 QKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVAKSKVVQK 189
              + AP +AKK TI K K AA  K A   AKPKAK  V  K     K  TVAK     K
Sbjct: 125 ---APAPALAKKPTIPKPKVAAKPKTAKIGAKPKAKAKVAAKTKATTK--TVAKKIPAAK 184

Query: 190 PKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKKVAVKKSKT 249
           PKA    KPK               +KP+KVAKT +  SPGK+       K V VKK KT
Sbjct: 185 PKAKTAGKPKTVA------------AKPAKVAKTAAVASPGKK-------KAVPVKKVKT 225

Query: 250 VKSPTRK 253
           VKSP  K
Sbjct: 245 VKSPAGK 225

[Close]
BLAST of CmaCh12G011310 vs. Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-32
Identity = 129/262 (49.24%), Postives = 146/262 (55.73%), Query Frame = 1 

Query: 5   ADPVVPSDAPAAAVAVENNAKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRMISEAIV 64
           A P  P+DAPAA  A  N AK+KK  A K             ++SPTH P+  M+SEAI 
Sbjct: 15  AAPEAPADAPAAPAADANAAKAKKATAPKK------------RASPTHLPYAEMVSEAIT 74

Query: 65  SLKERTGSSQYAITKFSEEKHKL-LPSNFRKLLLVHLKKLVSADKLVKVKNSYKLPSARS 124
           SLKERTGSS YAI KF E+KHK  LP NFRKLL V LKKLV+  KL KVKNSYKL SA  
Sbjct: 75  SLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSATK 134

Query: 125 VQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVAKSKVV 184
              K  +AP           K     KK  A AKPKAKT  K KP    KPK  AK K V
Sbjct: 135 PNPKPKAAP----------KKPKTGAKKPKAAAKPKAKTPAKAKP--ATKPKPAAKPKAV 194

Query: 185 QKPKAAA--VAKPKAAEKVKKVAPKPKPKSKP---SKVAKTLSRTSPGKRVAPATKPKKV 244
            KPK  A   AKP A  K K    KPKP +K    +K AKT ++ +PGK+ APA K    
Sbjct: 195 VKPKTPAKPKAKPAAKAKPKTAGAKPKPLAKKAGRAKAAKTSAKDTPGKK-APAKK---- 246

Query: 245 AVKKSKTVKSPTRKLLARKVKK 261
               SK   +P RK  +RK KK
Sbjct: 255 -AAPSKKAATPVRKAPSRKAKK 246

[Close]
BLAST of CmaCh12G011310 vs. Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-31
Identity = 126/249 (50.60%), Postives = 157/249 (63.05%), Query Frame = 1 

Query: 21  ENNAKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRMISEAIVSLKERTGSSQYAITKF 80
           E  A+ +KTK +K SK KK   A K ++  +HP +  MI +AIVSLKE+ GSSQYAI KF
Sbjct: 34  EPKAEVEKTKKAKGSKPKK---ASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKF 93

Query: 81  SEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKLPSARSVQQKSSSAPVVAKKTTI 140
            EEK K LP+NF+KLLL +LKK V++ KL+KVK S+KL +A             AKK  +
Sbjct: 94  IEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAA-------------AKKPAV 153

Query: 141 SKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVAKSK-VVQKPKAAAVAKPK-AAE 200
           +K KA    K AA     KAK A KPK   VVKPK  +K+K V  KPK AA AKPK  A 
Sbjct: 154 AKPKA----KTAAKAKSVKAKPAAKPKAKAVVKPKVASKAKAVAAKPKKAA-AKPKTVAA 213

Query: 201 KVKKVAPKP----KPKS--KPSKVAKTLSRTSPGKRVAPATK--PKKVAVK--KSKTVKS 258
           K K  A KP    KPKS  KP+KVAKT  +T+PGK+VA   K   KKV VK  K+K+VKS
Sbjct: 214 KTKPTAAKPKAVVKPKSKVKPAKVAKTSVKTTPGKKVAAVKKVAAKKVPVKSVKAKSVKS 261

[Close]
BLAST of CmaCh12G011310 vs. TrEMBL
Match: A0A0A0LLA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010270 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.4e-66
Identity = 187/267 (70.04%), Postives = 203/267 (76.03%), Query Frame = 1 

Query: 1   MASAADPVVPSDAPAAAVA--VENNAKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRM 60
           M+SAAD V+ SDAPAAAVA   EN++K+KK  ASK SKAKK SGAKK +SSPTHPPF +M
Sbjct: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60

Query: 61  ISEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKL 120
           ISEAIVSLKERTGSSQYAITKF+EEKHK LPSNFRKLLLVHLKKLV+A+KLVKVKNSYKL
Sbjct: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120

Query: 121 PSARSVQQK---SSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVV--K 180
           PSARS+Q K   +++APV AKK   SKLK AAS+KK AAVAK KAKTA KPKP  V   K
Sbjct: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLK-AASIKK-AAVAKSKAKTAAKPKPKAVAKPK 180

Query: 181 PKTVAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAT 240
           PKTVAKSK V KPK A  AK KAAEKVKKVAPKPK                      PA 
Sbjct: 181 PKTVAKSKTVAKPKTA--AKTKAAEKVKKVAPKPK----------------------PAA 240

Query: 241 KPKKVAVKKSKTVKSPTRKLLARKVKK 261
           K  KVA KK KTVKSP RK+ ARKVKK
Sbjct: 241 KAAKVAAKKPKTVKSPARKVQARKVKK 241

[Close]
BLAST of CmaCh12G011310 vs. TrEMBL
Match: F6HVJ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00500 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.1e-45
Identity = 156/296 (52.70%), Postives = 177/296 (59.80%), Query Frame = 1 

Query: 3   SAADPVVPSDAPAAAVAVENN----AKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRM 62
           SA + VV  D P     VEN     +K+KK KA K+ KAKK   AKK KS  THPPF  M
Sbjct: 9   SAVEVVV--DPPVTEPPVENQTGRKSKAKKAKAPKEPKAKK-PAAKKPKSPSTHPPFLEM 68

Query: 63  ISEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKL 122
           I+EAIV+LKERTGSSQYAITKF EEKHK LPSNFRKLLLVHLKKLV+++KLVKVKNSYKL
Sbjct: 69  ITEAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKVKNSYKL 128

Query: 123 PSARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVA 182
           PS+RS   K++  P  AK             K A A AKPKA  A KPKP    KPK  A
Sbjct: 129 PSSRSAPSKAAKKPAAAK---------PKPTKPAKAPAKPKA--AAKPKPKATTKPKAAA 188

Query: 183 KSKVVQKPKAAAVAKPKAAEKVKKV-------------APKPKPKSK------------P 242
           KSK       AA AKPKAA K K V              PKPKPK+K            P
Sbjct: 189 KSKAAPVKPKAAPAKPKAAVKPKAVPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPAARP 248

Query: 243 SKVAKTLSRTSPGKR---------VAPATKPKKVAVKKSKTVKSPTRKLLARKVKK 261
           +K A+T +RT+PGK+          APA K KK   KK K++KSP +K  ARK KK
Sbjct: 249 AKAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK 290

[Close]
BLAST of CmaCh12G011310 vs. TrEMBL
Match: A5BTS5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018553 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.5e-44
Identity = 155/296 (52.36%), Postives = 176/296 (59.46%), Query Frame = 1 

Query: 3   SAADPVVPSDAPAAAVAVENN----AKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRM 62
           SA + VV  D P     VEN     +K+KK KA K+ KAKK   AKK KS  THPPF  M
Sbjct: 9   SAVEVVV--DPPVTEPPVENQTGRKSKAKKAKAPKEPKAKK-PAAKKPKSPSTHPPFLEM 68

Query: 63  ISEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKL 122
           I+EAIV+LKERTGSSQYAITKF EEKHK LPSNFRKLLLVHLKKLV+++KLVKVKNSYKL
Sbjct: 69  ITEAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKVKNSYKL 128

Query: 123 PSARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVA 182
           PS+RS   K++  P  AK             K A A AKPKA  A KPKP    KPK  A
Sbjct: 129 PSSRSAPSKAAKKPAAAK---------PKPTKPAKAPAKPKA--AAKPKPKATTKPKAAA 188

Query: 183 KSKVVQKPKAAAVAKPKAAEKVK-------------KVAPKPKPKSK------------P 242
           KSK       AA AKPKAA K K                PKPKPK+K            P
Sbjct: 189 KSKAAPVKPKAAPAKPKAAVKPKAAPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPAARP 248

Query: 243 SKVAKTLSRTSPGKRV---------APATKPKKVAVKKSKTVKSPTRKLLARKVKK 261
           +K A+T +RT+PGK+          APA K KK   KK K++KSP +K  ARK KK
Sbjct: 249 AKAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK 290

[Close]
BLAST of CmaCh12G011310 vs. TrEMBL
Match: F6GXM8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00730 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-42
Identity = 146/273 (53.48%), Postives = 178/273 (65.20%), Query Frame = 1 

Query: 4   AADPVVPSDAPAAAVAVENNA-KSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRMISEA 63
           A +PV  ++  AA  A EN A K+ KTK +K+ KAKK +GAKK +S PTHPP+  MI+EA
Sbjct: 9   AVEPV--AEPEAAEPAEENPAPKAAKTKKAKEPKAKKPAGAKKPRSPPTHPPYIEMITEA 68

Query: 64  IVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKLPSAR 123
           IV+LKE++GSSQYAI KF EEKHK LP NF+KLLL+HLKK V+A KLVKV+ SYKLP +R
Sbjct: 69  IVALKEKSGSSQYAIAKFIEEKHKQLPPNFKKLLLIHLKKFVAAGKLVKVRGSYKLPPSR 128

Query: 124 SVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVAKSKV 183
               K + A    KK   +K K AA  K+A      KA    KPK + V KPK  AK+K 
Sbjct: 129 PSAPKPTGAAPAKKKAVATKPKTAAKPKEAKNTKAKKA--PAKPKAS-VPKPKAAAKTKA 188

Query: 184 VQKPKAAAV-----AKPKAAEKVKKVA-PKPKPKSKPSKVAKTLSRTSPGKRVAPATKP- 243
             KPK A       AKPKAA K K V  PKPKPK KP+K A+T +RT+PGK+ AP  KP 
Sbjct: 189 AAKPKVAPAKPKVPAKPKAAAKTKTVTKPKPKPKEKPAKAARTSTRTTPGKKAAP-PKPA 248

Query: 244 -KKVAVKKS-------KTVKSPTRKLLARKVKK 261
            KK  VKK+       K+VKSP +K  A+K KK
Sbjct: 249 LKKTPVKKAPAKSVKPKSVKSPAKKAAAKKAKK 275

[Close]
BLAST of CmaCh12G011310 vs. TrEMBL
Match: W9RHQ2_9ROSA (Histone OS=Morus notabilis GN=L484_024560 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.8e-40
Identity = 144/247 (58.30%), Postives = 158/247 (63.97%), Query Frame = 1 

Query: 16  AAVAVENNAKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRMISEAIVSLKERTGSSQY 75
           AAVA    AK+ K K +           KK KSSP+HP F  MI+EAIVSLKERTGSSQY
Sbjct: 4   AAVAAAPAAKAVKAKTAP----------KKAKSSPSHPTFHEMITEAIVSLKERTGSSQY 63

Query: 76  AITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKLPSARSVQQKSSSAPVVA 135
           AITKF EEKHK LP NF+KLLL HLKKLV+A+KLVKVK S+KLPSARSV  K   AP  A
Sbjct: 64  AITKFIEEKHKQLPPNFKKLLLYHLKKLVAAEKLVKVKQSFKLPSARSVAAK---APAPA 123

Query: 136 KKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVAKSKVVQKPKAAAVAKPK 195
           KK   SK KAA   K AAA  KPKA                        KPKA   AKPK
Sbjct: 124 KKPAASKPKAAKPAKAAAAKLKPKA----------------------AGKPKAKVAAKPK 183

Query: 196 AAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATKPKK-VAVKKSKTV-KSPTRKL 255
           AA K  K APKPK  +KP+KVA+T SR SPGK VAPATK KK V VKK K+V KSP +K 
Sbjct: 184 AAVK-PKAAPKPKATAKPAKVARTTSRKSPGK-VAPATKAKKAVPVKKPKSVKKSPAKK- 211

Query: 256 LARKVKK 261
            A+K KK
Sbjct: 244 -AKKAKK 211

[Close]
BLAST of CmaCh12G011310 vs. TAIR10
Match: AT2G30620.1 (AT2G30620.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 155.6 bits (392), Expect = 4.2e-38
Identity = 138/273 (50.55%), Postives = 167/273 (61.17%), Query Frame = 1 

Query: 2   ASAADPVV--PSDAPAAAVAVENNAKSKKTKASKDSKAK-KLSGAKKTKSSPTHPPFFRM 61
           + AAD  V  P   PAA        KSKKT  +K +K   K +   K K++ +HP +  M
Sbjct: 14  SGAADTTVKSPEKKPAA-----KGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEM 73

Query: 62  ISEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKL 121
           I +AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LV+++KLVKVK S+K+
Sbjct: 74  IKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 133

Query: 122 PSARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKP--KT 181
           PSARS      +APV  K T ++K K     K AAAVA  KAK A K    G  KP  K 
Sbjct: 134 PSARSAATPKPAAPVKKKATVVAKPKG----KVAAAVAPAKAKAAAK----GTKKPAAKV 193

Query: 182 VAKSKVVQKPKA-AAVAKPK-----AAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVA 241
           VAK+KV  KPKA    AKPK     A  K K VA KPK K +P+K ++T +RTSPGK+VA
Sbjct: 194 VAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVA 253

Query: 242 PATKPKKVAVK---KSKTVKSPTRKLLARKVKK 261
              K   V  K   KS  VKSP ++   RK KK
Sbjct: 254 APAKKVAVTKKAPAKSVKVKSPAKRASTRKAKK 273

[Close]
BLAST of CmaCh12G011310 vs. TAIR10
Match: AT1G06760.1 (AT1G06760.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-32
Identity = 129/264 (48.86%), Postives = 159/264 (60.23%), Query Frame = 1 

Query: 11  SDAPAAAVAVENN--AKSKKTKASKDSKAKK-LSGAKKTKSSPTHPPFFRMISEAIVSLK 70
           +DAP    AVE    AK +KTK  K+ K KK ++ A K ++  +HP +  MI +AIV+LK
Sbjct: 18  ADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTLK 77

Query: 71  ERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKLPSARSVQQK 130
           ERTGSSQYAI KF EEK K LP  FRKLLL++LK+LV++ KLVKVK S+KLPSA +   K
Sbjct: 78  ERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSASA---K 137

Query: 131 SSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVAKSKVVQKPK 190
           +SS    A+K+  +K K A     A   AK K   A K K    VKPKT A  KV  K K
Sbjct: 138 ASSPKAAAEKSAPAKKKPAT---VAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAK 197

Query: 191 AAAVAK-PKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPATK-------PKKVA 250
           A  V +   AA K K V  KPK K++P+K AKT   TSP K+   ATK        KK  
Sbjct: 198 AKPVPRATAAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATKKKTP 257

Query: 251 VK---KSKTVKSPTRKLLARKVKK 261
           VK   K KTVKSP ++  +R VKK
Sbjct: 258 VKKVVKPKTVKSPAKRASSR-VKK 274

[Close]
BLAST of CmaCh12G011310 vs. TAIR10
Match: AT2G18050.1 (AT2G18050.1 histone H1-3)

HSP 1 Score: 69.3 bits (168), Expect = 3.9e-12
Identity = 66/170 (38.82%), Postives = 94/170 (55.29%), Query Frame = 1 

Query: 32  SKDSKAKKLSGAKKTKS--SPTHPPFFRMISEAIVSLKERTGSSQYAITKFSEEKHK-LL 91
           ++D   KK   AKK +   + THPP+F+MI EA++ LKE+ GSS YAI K  EEKHK LL
Sbjct: 2   AEDKILKKTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLL 61

Query: 92  PSNFRKLLLVHLKKLVSADKLVKVKNSYKLPSARSV----QQKSSSAPVVAKKTTISKLK 151
           P +FRK L + LK  V+  KLVK++ SYKL     +    Q K +   +  +   I+K  
Sbjct: 62  PESFRKTLSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKEITKRT 121

Query: 152 AAASV--KKAAAVAKPKAKTAVKPKPNGVVKPKTVAKSKVVQKPKAAAVA 193
            ++S   KK  +V K + K  VK       +PK++  S   +K   A+ A
Sbjct: 122 RSSSTRPKKTVSVNKQEKKRKVKK----ARQPKSIKSSVGKKKAMKASAA 167

[Close]
BLAST of CmaCh12G011310 vs. NCBI nr
Match: gi|449442955|ref|XP_004139246.1| (PREDICTED: histone H1-like [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 1.2e-79
Identity = 206/267 (77.15%), Postives = 224/267 (83.90%), Query Frame = 1 

Query: 1   MASAADPVVPSDAPAAAVA--VENNAKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRM 60
           M+SAAD V+ SDAPAAAVA   EN++K+KK  ASK SKAKK SGAKK +SSPTHPPF +M
Sbjct: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60

Query: 61  ISEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKL 120
           ISEAIVSLKERTGSSQYAITKF+EEKHK LPSNFRKLLLVHLKKLV+A+KLVKVKNSYKL
Sbjct: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120

Query: 121 PSARSVQQK---SSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVV--K 180
           PSARS+Q K   +++APV AKK   SKLK AAS+KK AAVAK KAKTA KPKP  V   K
Sbjct: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLK-AASIKK-AAVAKSKAKTAAKPKPKAVAKPK 180

Query: 181 PKTVAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAT 240
           PKTVAKSK V KPK A  AK KAAEKVKKVAPKPKP +K +KVAKTLSRTSPGKR APAT
Sbjct: 181 PKTVAKSKTVAKPKTA--AKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPAT 240

Query: 241 KPKKVAVKKSKTVKSPTRKLLARKVKK 261
           K KKVA KK KTVKSP RK+ ARKVKK
Sbjct: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 263

[Close]
BLAST of CmaCh12G011310 vs. NCBI nr
Match: gi|659070684|ref|XP_008456174.1| (PREDICTED: histone H1-like [Cucumis melo])

HSP 1 Score: 302.8 bits (774), Expect = 6.0e-79
Identity = 204/268 (76.12%), Postives = 219/268 (81.72%), Query Frame = 1 

Query: 1   MASAADPVVPSDAPAAAVAV-----ENNAKSKKTKASKDSKAKKLSGAKKTKSSPTHPPF 60
           M+SAADPVV SDAPAAA A      EN++KSKK  ASK SKAKK SGAKK +SSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  FRMISEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNS 120
            +MISEAIVSLKERTGSSQYAITKF+EEKHK LPSNFRKLLLVHLKKLV+ADKLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSVQQK-SSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVV-- 180
           YKLPSARS+Q K +++APV  KK   SKLKA AS+KK  AVAKPKAKTA K KP  V   
Sbjct: 121 YKLPSARSIQAKAAAAAPVATKKPVSSKLKAVASIKK-PAVAKPKAKTAAKSKPKAVAKP 180

Query: 181 KPKTVAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPA 240
           KPKTV KSK V KPK A  AK KAAEKVKKVAPKPK  +K +KVAKTLSRTSPGKR APA
Sbjct: 181 KPKTVTKSKTVAKPKTA--AKTKAAEKVKKVAPKPKAGAKATKVAKTLSRTSPGKRAAPA 240

Query: 241 TKPKKVAVKKSKTVKSPTRKLLARKVKK 261
            K KKVA KK KTVKSP RK+ ARKVKK
Sbjct: 241 AKAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]
BLAST of CmaCh12G011310 vs. NCBI nr
Match: gi|700205672|gb|KGN60791.1| (hypothetical protein Csa_2G010270 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 2.0e-66
Identity = 187/267 (70.04%), Postives = 203/267 (76.03%), Query Frame = 1 

Query: 1   MASAADPVVPSDAPAAAVA--VENNAKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRM 60
           M+SAAD V+ SDAPAAAVA   EN++K+KK  ASK SKAKK SGAKK +SSPTHPPF +M
Sbjct: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60

Query: 61  ISEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKL 120
           ISEAIVSLKERTGSSQYAITKF+EEKHK LPSNFRKLLLVHLKKLV+A+KLVKVKNSYKL
Sbjct: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120

Query: 121 PSARSVQQK---SSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVV--K 180
           PSARS+Q K   +++APV AKK   SKLK AAS+KK AAVAK KAKTA KPKP  V   K
Sbjct: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLK-AASIKK-AAVAKSKAKTAAKPKPKAVAKPK 180

Query: 181 PKTVAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSKPSKVAKTLSRTSPGKRVAPAT 240
           PKTVAKSK V KPK A  AK KAAEKVKKVAPKPK                      PA 
Sbjct: 181 PKTVAKSKTVAKPKTA--AKTKAAEKVKKVAPKPK----------------------PAA 240

Query: 241 KPKKVAVKKSKTVKSPTRKLLARKVKK 261
           K  KVA KK KTVKSP RK+ ARKVKK
Sbjct: 241 KAAKVAAKKPKTVKSPARKVQARKVKK 241

[Close]
BLAST of CmaCh12G011310 vs. NCBI nr
Match: gi|225463948|ref|XP_002270211.1| (PREDICTED: histone H1 [Vitis vinifera])

HSP 1 Score: 189.5 bits (480), Expect = 7.4e-45
Identity = 156/296 (52.70%), Postives = 177/296 (59.80%), Query Frame = 1 

Query: 3   SAADPVVPSDAPAAAVAVENN----AKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRM 62
           SA + VV  D P     VEN     +K+KK KA K+ KAKK   AKK KS  THPPF  M
Sbjct: 9   SAVEVVV--DPPVTEPPVENQTGRKSKAKKAKAPKEPKAKK-PAAKKPKSPSTHPPFLEM 68

Query: 63  ISEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKL 122
           I+EAIV+LKERTGSSQYAITKF EEKHK LPSNFRKLLLVHLKKLV+++KLVKVKNSYKL
Sbjct: 69  ITEAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKVKNSYKL 128

Query: 123 PSARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVA 182
           PS+RS   K++  P  AK             K A A AKPKA  A KPKP    KPK  A
Sbjct: 129 PSSRSAPSKAAKKPAAAK---------PKPTKPAKAPAKPKA--AAKPKPKATTKPKAAA 188

Query: 183 KSKVVQKPKAAAVAKPKAAEKVKKV-------------APKPKPKSK------------P 242
           KSK       AA AKPKAA K K V              PKPKPK+K            P
Sbjct: 189 KSKAAPVKPKAAPAKPKAAVKPKAVPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPAARP 248

Query: 243 SKVAKTLSRTSPGKR---------VAPATKPKKVAVKKSKTVKSPTRKLLARKVKK 261
           +K A+T +RT+PGK+          APA K KK   KK K++KSP +K  ARK KK
Sbjct: 249 AKAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK 290

[Close]
BLAST of CmaCh12G011310 vs. NCBI nr
Match: gi|147822817|emb|CAN77274.1| (hypothetical protein VITISV_018553 [Vitis vinifera])

HSP 1 Score: 188.0 bits (476), Expect = 2.1e-44
Identity = 155/296 (52.36%), Postives = 176/296 (59.46%), Query Frame = 1 

Query: 3   SAADPVVPSDAPAAAVAVENN----AKSKKTKASKDSKAKKLSGAKKTKSSPTHPPFFRM 62
           SA + VV  D P     VEN     +K+KK KA K+ KAKK   AKK KS  THPPF  M
Sbjct: 9   SAVEVVV--DPPVTEPPVENQTGRKSKAKKAKAPKEPKAKK-PAAKKPKSPSTHPPFLEM 68

Query: 63  ISEAIVSLKERTGSSQYAITKFSEEKHKLLPSNFRKLLLVHLKKLVSADKLVKVKNSYKL 122
           I+EAIV+LKERTGSSQYAITKF EEKHK LPSNFRKLLLVHLKKLV+++KLVKVKNSYKL
Sbjct: 69  ITEAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKVKNSYKL 128

Query: 123 PSARSVQQKSSSAPVVAKKTTISKLKAAASVKKAAAVAKPKAKTAVKPKPNGVVKPKTVA 182
           PS+RS   K++  P  AK             K A A AKPKA  A KPKP    KPK  A
Sbjct: 129 PSSRSAPSKAAKKPAAAK---------PKPTKPAKAPAKPKA--AAKPKPKATTKPKAAA 188

Query: 183 KSKVVQKPKAAAVAKPKAAEKVK-------------KVAPKPKPKSK------------P 242
           KSK       AA AKPKAA K K                PKPKPK+K            P
Sbjct: 189 KSKAAPVKPKAAPAKPKAAVKPKAAPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPAARP 248

Query: 243 SKVAKTLSRTSPGKRV---------APATKPKKVAVKKSKTVKSPTRKLLARKVKK 261
           +K A+T +RT+PGK+          APA K KK   KK K++KSP +K  ARK KK
Sbjct: 249 AKAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK 290

The following BLAST results are available for this feature:
BLAST of CmaCh12G011310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H1_SOLLC6.0e-3950.72Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H12_ARATH7.4e-3750.55Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1[more]
H1_EUPES6.2e-3651.42Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
H1_MAIZE1.1e-3249.24Histone H1 OS=Zea mays PE=2 SV=2[more]
H1_PEA1.2e-3150.60Histone H1 OS=Pisum sativum PE=2 SV=1[more]
BLAST of CmaCh12G011310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLA4_CUCSA1.4e-6670.04Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010270 PE=3 SV=1[more]
F6HVJ1_VITVI5.1e-4552.70Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00500 PE=3 SV=... [more]
A5BTS5_VITVI1.5e-4452.36Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018553 PE=3 SV=1[more]
F6GXM8_VITVI1.1e-4253.48Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00730 PE=3 SV=... [more]
W9RHQ2_9ROSA3.8e-4058.30Histone OS=Morus notabilis GN=L484_024560 PE=3 SV=1[more]
BLAST of CmaCh12G011310 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G30620.14.2e-3850.55 winged-helix DNA-binding transcription factor family protein[more]
AT1G06760.15.8e-3248.86 winged-helix DNA-binding transcription factor family protein[more]
AT2G18050.13.9e-1238.82 histone H1-3[more]
BLAST of CmaCh12G011310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442955|ref|XP_004139246.1|1.2e-7977.15PREDICTED: histone H1-like [Cucumis sativus][more]
gi|659070684|ref|XP_008456174.1|6.0e-7976.12PREDICTED: histone H1-like [Cucumis melo][more]
gi|700205672|gb|KGN60791.1|2.0e-6670.04hypothetical protein Csa_2G010270 [Cucumis sativus][more]
gi|225463948|ref|XP_002270211.1|7.4e-4552.70PREDICTED: histone H1 [Vitis vinifera][more]
gi|147822817|emb|CAN77274.1|2.1e-4452.36hypothetical protein VITISV_018553 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005818Histone_H1/H5_H15
IPR005819Histone_H5
IPR011991Winged helix-turn-helix DNA-binding domain
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G011310.1CmaCh12G011310.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005818Linker histone H1/H5, domain H15PFAMPF00538Linker_histonecoord: 52..118
score: 2.4
IPR005818Linker histone H1/H5, domain H15SMARTSM00526h15plus2coord: 49..115
score: 1.1
IPR005818Linker histone H1/H5, domain H15PROFILEPS51504H15coord: 51..120
score: 27
IPR005819Histone H5PRINTSPR00624HISTONEH5coord: 144..158
score: 1.3E-10coord: 38..59
score: 1.3E-10coord: 65..82
score: 1.3E-10coord: 197..216
score: 1.3E-10coord: 175..192
score: 1.3
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 47..121
score: 1.2
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 48..127
score: 5.12
NoneNo IPR availablePANTHERPTHR11467HISTONE H1/H5coord: 1..257
score: 1.3
NoneNo IPR availablePANTHERPTHR11467:SF54SUBFAMILY NOT NAMEDcoord: 1..257
score: 1.3