Cp4.1LG00g04300 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g04300
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Histone H1
Location	Cp4.1LG00 : 16044725 .. 16045598 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCGCCGCTGATCCTGTTGCCTCCTCCGATGCTCCCGCCACCGTGGCTGTCGTGGCGCAGCCAGCGGAGAACGATTCGAAGTCGAAGAAAGCTGCGGCTTCTAAAGCTTCGAAGGCTAAGAAACCATCTGGTGCGAAGAGGACCAGATCTTCGCCGACTCATCCTCCTTTCTTTGAGGTATGAGAAATTGATCTCTGTGTTGATCGATAATGTTTGTTTATTCTATTTCTACGTTCTGATCTGATCGAATTTTGAAATTGTTCTACAGATGATTAGCGAAGCGATTGTGTCGCTGAAGGAGAGGACCGGCTCGAGTCAGTACGCCATTACGAAATTCAGCGAAGAGAAGCACAAACAATTGCCGTCCAATTTCAGGAAGCTCTTGCTCGTTCATCTGAAGAAGCTAGTCGCCGCTGATAAACTCGTTAAGGTCAAGAACTCCTACAAACTTCCATCAGCGCGCTCGAAAGCTGCAGCAGCGCCAGTTGTCGCCAAGAAGCCAGCAAGCTCTAAACTCAAGGCGGCTGTAAGCGTAAAGAAGGCCGCCGTCGCTAAACCGAAGGCTAAAACTGCTGTGAAACCTAAGCCAAAGGTCGTTGCGAAGCCAAAGGCAGCCGCTAAATCGAAGGTCGTCGCGAAACCAAAGGCCGTCGCTCCAGCCAAGCGTAAGGCGGCAGAAAAGGTTAAGAAGGTCGCTCCGAAGCCTAAGCCTGCTGCTAAGCCAGCTAAAGTTGCGAAAACACTGTCACGAACTTCGCCAGGAAAGAAAGCTGCACCGGCGGCGAAGGCGAAGAAGGTAGCGGCGAAGAAGCCAAAGACTGTAAAGTCTCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGA

mRNA sequence

ATGTCTTCCGCCGCTGATCCTGTTGCCTCCTCCGATGCTCCCGCCACCGTGGCTGTCGTGGCGCAGCCAGCGGAGAACGATTCGAAGTCGAAGAAAGCTGCGGCTTCTAAAGCTTCGAAGGCTAAGAAACCATCTGGTGCGAAGAGGACCAGATCTTCGCCGACTCATCCTCCTTTCTTTGAGATGATTAGCGAAGCGATTGTGTCGCTGAAGGAGAGGACCGGCTCGAGTCAGTACGCCATTACGAAATTCAGCGAAGAGAAGCACAAACAATTGCCGTCCAATTTCAGGAAGCTCTTGCTCGTTCATCTGAAGAAGCTAGTCGCCGCTGATAAACTCGTTAAGGTCAAGAACTCCTACAAACTTCCATCAGCGCGCTCGAAAGCTGCAGCAGCGCCAGTTGTCGCCAAGAAGCCAGCAAGCTCTAAACTCAAGGCGGCTGTAAGCGTAAAGAAGGCCGCCGTCGCTAAACCGAAGGCTAAAACTGCTGTGAAACCTAAGCCAAAGGTCGTTGCGAAGCCAAAGGCAGCCGCTAAATCGAAGGTCGTCGCGAAACCAAAGGCCGTCGCTCCAGCCAAGCGTAAGGCGGCAGAAAAGGTTAAGAAGGTCGCTCCGAAGCCTAAGCCTGCTGCTAAGCCAGCTAAAGTTGCGAAAACACTGTCACGAACTTCGCCAGGAAAGAAAGCTGCACCGGCGGCGAAGGCGAAGAAGGTAGCGGCGAAGAAGCCAAAGACTGTAAAGTCTCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGA

Coding sequence (CDS)

ATGTCTTCCGCCGCTGATCCTGTTGCCTCCTCCGATGCTCCCGCCACCGTGGCTGTCGTGGCGCAGCCAGCGGAGAACGATTCGAAGTCGAAGAAAGCTGCGGCTTCTAAAGCTTCGAAGGCTAAGAAACCATCTGGTGCGAAGAGGACCAGATCTTCGCCGACTCATCCTCCTTTCTTTGAGATGATTAGCGAAGCGATTGTGTCGCTGAAGGAGAGGACCGGCTCGAGTCAGTACGCCATTACGAAATTCAGCGAAGAGAAGCACAAACAATTGCCGTCCAATTTCAGGAAGCTCTTGCTCGTTCATCTGAAGAAGCTAGTCGCCGCTGATAAACTCGTTAAGGTCAAGAACTCCTACAAACTTCCATCAGCGCGCTCGAAAGCTGCAGCAGCGCCAGTTGTCGCCAAGAAGCCAGCAAGCTCTAAACTCAAGGCGGCTGTAAGCGTAAAGAAGGCCGCCGTCGCTAAACCGAAGGCTAAAACTGCTGTGAAACCTAAGCCAAAGGTCGTTGCGAAGCCAAAGGCAGCCGCTAAATCGAAGGTCGTCGCGAAACCAAAGGCCGTCGCTCCAGCCAAGCGTAAGGCGGCAGAAAAGGTTAAGAAGGTCGCTCCGAAGCCTAAGCCTGCTGCTAAGCCAGCTAAAGTTGCGAAAACACTGTCACGAACTTCGCCAGGAAAGAAAGCTGCACCGGCGGCGAAGGCGAAGAAGGTAGCGGCGAAGAAGCCAAAGACTGTAAAGTCTCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGA

Protein sequence

MSSAADPVASSDAPATVAVVAQPAENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK

Homology

[Close]

BLAST of Cp4.1LG00g04300 vs. Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.4e-41
Identity = 147/280 (52.50%), Postives = 170/280 (60.71%), Query Frame = 1


Query: 8   VASSDAPATVAVVAQPAENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFFEMISEAI 67
           V    AP TV   A P     K+KK      +KAKKP+  ++  ++PTHPP+FEMI +AI
Sbjct: 13  VEEQAAPETVKDEANPPAKSGKAKKE-----TKAKKPAAPRKRSATPTHPPYFEMIKDAI 72

Query: 68  VSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARS 127
           V+LKERTGSSQ+AITKF EEK K LPSNF+KLLL  LKK VA++KLVKVKNSYKLPS   
Sbjct: 73  VTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYKLPSGSK 132

Query: 128 KAAAAPVVAKKPASSK--------------LKAAVSVKKAAVAKP--KAKTAVKPKPKVV 187
            AAAA    KKPA++K               K A   K AA AKP  KAK A K KP   
Sbjct: 133 PAAAAVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAK 192

Query: 188 AKPKAAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKP--------AKVAKTLSRT 247
           AKP A AK    AKPKA A AK KAA K K    K K A KP        AKVAKT +RT
Sbjct: 193 AKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTTTAKVAKTATRT 252

Query: 248 SPGKKAAP-AAKAKKVAAKK--PKTVKSPARKVQARKVKK 261
           +P +KAAP A  AKK   KK   K VKSPA+K   ++ +K
Sbjct: 253 TPSRKAAPKATPAKKEPVKKAPAKNVKSPAKKATPKRGRK 287

[Close]

BLAST of Cp4.1LG00g04300 vs. Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.6e-37
Identity = 142/248 (57.26%), Postives = 155/248 (62.50%), Query Frame = 1


Query: 11  SDAPATVAVVAQPAENDSK-SKKAAASKASKAKKPS-GAKRTRSSPT--HPPFFEMISEA 70
           +D P +  VV +  E  SK   KAAA K  K KK    AK+ +S  T  HP FFEMIS+A
Sbjct: 2   ADTPVSAPVVPEVTERKSKRGTKAAAVKVPKEKKKVIAAKKPKSKGTSSHPSFFEMISDA 61

Query: 71  IVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSAR 130
           I +LKERTGSSQYAI KF E+KHKQLPSNFRKLLL HLKKLVA+ KLVKVKNS+KLPSAR
Sbjct: 62  ISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPSAR 121

Query: 131 SKAAAAPVVAKKPASSKLKAAVSVKKAAV-AKPKAKTAVKPKPKVVAKPKAAAKSKVVAK 190
             AA AP +AKKP   K K A   K A + AKPKAK  V  K K  A  K  AK    AK
Sbjct: 122 --AAPAPALAKKPTIPKPKVAAKPKTAKIGAKPKAKAKVAAKTK--ATTKTVAKKIPAAK 181

Query: 191 PKAVAPAKRKAAEKVKKVAPKPKP-AAKPAKVAKTLSRTSPGKKAAPAAKAKKVAAKKPK 250
           PKA             K A KPK  AAKPAKVAKT +  SPGKK       K V  KK K
Sbjct: 182 PKA-------------KTAGKPKTVAAKPAKVAKTAAVASPGKK-------KAVPVKKVK 225

Query: 251 TVKSPARK 253
           TVKSPA K
Sbjct: 242 TVKSPAGK 225

[Close]

BLAST of Cp4.1LG00g04300 vs. Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.5e-34
Identity = 136/253 (53.75%), Postives = 163/253 (64.43%), Query Frame = 1


Query: 22  QPAENDSKSKKAAASKASKAK-KPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYA 81
           +PA    KSKK   +KA+K   K +   + +++ +HP + EMI +AIV+LKERTGSSQYA
Sbjct: 27  KPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYA 86

Query: 82  ITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAA---AAPVVAK 141
           I KF EEKHK LP  FRKLLLV+LK+LVA++KLVKVK S+K+PSARS A    AAPV  K
Sbjct: 87  IQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAPVKKK 146

Query: 142 KPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKSKVVAKPKA-VAPAKRK- 201
               +K K  V+   AAVA  KAK A K   K  AK    AK+KV AKPKA V  AK K 
Sbjct: 147 ATVVAKPKGKVA---AAVAPAKAKAAAKGTKKPAAK--VVAKAKVTAKPKAKVTAAKPKS 206

Query: 202 ----AAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKK-AAPAAK---AKKVAAKKPKTVK 261
               A  K K VA KPK   +PAK ++T +RTSPGKK AAPA K    KK  AK  K VK
Sbjct: 207 KSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVK-VK 266

[Close]

BLAST of Cp4.1LG00g04300 vs. Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.2e-33
Identity = 125/244 (51.23%), Postives = 150/244 (61.48%), Query Frame = 1


Query: 20  VAQPAENDSKSKKAAASKASKAK--KPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSS 79
           + +P   + +  KA   K  KAK  KP  A + R+  +HP + EMI +AIVSLKE+ GSS
Sbjct: 24  ITEPEVPEKEEPKAEVEKTKKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSS 83

Query: 80  QYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAAAAPVVAK 139
           QYAI KF EEK KQLP+NF+KLLL +LKK VA+ KL+KVK S+KL +A  K A A   AK
Sbjct: 84  QYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAAAKKPAVAKPKAK 143

Query: 140 KPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKSKVVAKPKAVAPAKRKAA 199
             A +K     SVK    AKPKAK  VKPK    AK  AA   K  AKPK VA   +  A
Sbjct: 144 TAAKAK-----SVKAKPAAKPKAKAVVKPKVASKAKAVAAKPKKAAAKPKTVAAKTKPTA 203

Query: 200 EKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAK--AKKVAAK--KPKTVKSPARKV 258
            K K V  KPK   KPAKVAKT  +T+PGKK A   K  AKKV  K  K K+VKSP +KV
Sbjct: 204 AKPKAVV-KPKSKVKPAKVAKTSVKTTPGKKVAAVKKVAAKKVPVKSVKAKSVKSPVKKV 261

[Close]

BLAST of Cp4.1LG00g04300 vs. Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.3e-32
Identity = 136/264 (51.52%), Postives = 161/264 (60.98%), Query Frame = 1


Query: 10  SSDAPAT-VAVVAQPAENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFFEMISEAIV 69
           ++DAP T  AV  +PA    K+K     K  K    +  KRT SS  HP + EMI +AIV
Sbjct: 17  AADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSS--HPTYEEMIKDAIV 76

Query: 70  SLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSK 129
           +LKERTGSSQYAI KF EEK K+LP  FRKLLL++LK+LVA+ KLVKVK S+KLPSA +K
Sbjct: 77  TLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSASAK 136

Query: 130 AAAAPVVAKKPASSKLK-AAVSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKSKVVAKPK 189
           A++    A+K A +K K A V+V K   AK K   A K K  +  KPK AA  KV AK K
Sbjct: 137 ASSPKAAAEKSAPAKKKPATVAVTK---AKRKVAAASKAKKTIAVKPKTAAAKKVTAKAK 196

Query: 190 A-VAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAK-------AKKVA 249
           A   P    AA K K V  KPK  A+PAK AKT   TSP KKA  A K        KK  
Sbjct: 197 AKPVPRATAAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATKKKTP 256

Query: 250 AK---KPKTVKSPARKVQARKVKK 261
            K   KPKTVKSPA++  +R VKK
Sbjct: 257 VKKVVKPKTVKSPAKRASSR-VKK 274

[Close]

BLAST of Cp4.1LG00g04300 vs. TrEMBL
Match: A0A0A0LLA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010270 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.5e-76
Identity = 208/268 (77.61%), Postives = 214/268 (79.85%), Query Frame = 1


Query: 1   MSSAADPVASSDAPATVAVVAQPAENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60
           MSSAAD V  SDAPA  A VAQPAENDSK+KKAAASKASKAKKPSGAK+ RSSPTHPPF 
Sbjct: 1   MSSAADSVIISDAPA--AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFL 60

Query: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNSY
Sbjct: 61  QMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSY 120

Query: 121 KLPSARS------KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVA-- 180
           KLPSARS       AAAAPV AKKP SSKLKAA S+KKAAVAK KAKTA KPKPK VA  
Sbjct: 121 KLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAA-SIKKAAVAKSKAKTAAKPKPKAVAKP 180

Query: 181 KPKAAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPA 240
           KPK  AKSK VAKPK    AK KAAEKVKKVAPKPK                      PA
Sbjct: 181 KPKTVAKSKTVAKPKTA--AKTKAAEKVKKVAPKPK----------------------PA 240

Query: 241 AKAKKVAAKKPKTVKSPARKVQARKVKK 261
           AKA KVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AKAAKVAAKKPKTVKSPARKVQARKVKK 241

[Close]

BLAST of Cp4.1LG00g04300 vs. TrEMBL
Match: F6HVJ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00500 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.4e-49
Identity = 172/299 (57.53%), Postives = 196/299 (65.55%), Query Frame = 1


Query: 1   MSSAADPVASSDAPATVAVVAQPAEND----SKSKKAAASKASKAKKPSGAKRTRSSPTH 60
           M+SA   V++ +      V   P EN     SK+KKA A K  KAKKP+ AK+ +S  TH
Sbjct: 1   MASAEIAVSAVEVVVDPPVTEPPVENQTGRKSKAKKAKAPKEPKAKKPA-AKKPKSPSTH 60

Query: 61  PPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKV 120
           PPF EMI+EAIV+LKERTGSSQYAITKF EEKHK+LPSNFRKLLLVHLKKLVA++KLVKV
Sbjct: 61  PPFLEMITEAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKV 120

Query: 121 KNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVAKPKA 180
           KNSYKLPS+RS  + A   AKKPA++K K     K  A AKPKA  A KPKPK   KPKA
Sbjct: 121 KNSYKLPSSRSAPSKA---AKKPAAAKPKPTKPAK--APAKPKA--AAKPKPKATTKPKA 180

Query: 181 AAKSKVV-AKPKAVAPAKRKAAEKVKKV-------------------------APKPKPA 240
           AAKSK    KPKA APAK KAA K K V                          PK KPA
Sbjct: 181 AAKSKAAPVKPKA-APAKPKAAVKPKAVPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPA 240

Query: 241 AKPAKVAKTLSRTSPGKK---------AAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 261
           A+PAK A+T +RT+PGKK         AAPAAK KK  AKKPK++KSPA+K  ARK KK
Sbjct: 241 ARPAKAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK 290

[Close]

BLAST of Cp4.1LG00g04300 vs. TrEMBL
Match: A5BTS5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018553 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 7.6e-49
Identity = 173/299 (57.86%), Postives = 197/299 (65.89%), Query Frame = 1


Query: 1   MSSAADPVASSDAPATVAVVAQPAEND----SKSKKAAASKASKAKKPSGAKRTRSSPTH 60
           M+SA   V++ +      V   P EN     SK+KKA A K  KAKKP+ AK+ +S  TH
Sbjct: 1   MASAEIAVSAVEVVVDPPVTEPPVENQTGRKSKAKKAKAPKEPKAKKPA-AKKPKSPSTH 60

Query: 61  PPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKV 120
           PPF EMI+EAIV+LKERTGSSQYAITKF EEKHK+LPSNFRKLLLVHLKKLVA++KLVKV
Sbjct: 61  PPFLEMITEAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKV 120

Query: 121 KNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVAKPKA 180
           KNSYKLPS+RS  + A   AKKPA++K K     K  A AKPKA  A KPKPK   KPKA
Sbjct: 121 KNSYKLPSSRSAPSKA---AKKPAAAKPKPTKPAK--APAKPKA--AAKPKPKATTKPKA 180

Query: 181 AAKSKVV-AKPKAVAPAKRKAAEKVK---------------KVAPKP----------KPA 240
           AAKSK    KPKA APAK KAA K K               K  PKP          KPA
Sbjct: 181 AAKSKAAPVKPKA-APAKPKAAVKPKAAPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPA 240

Query: 241 AKPAKVAKTLSRTSPGKK---------AAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 261
           A+PAK A+T +RT+PGKK         AAPAAK KK  AKKPK++KSPA+K  ARK KK
Sbjct: 241 ARPAKAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK 290

[Close]

BLAST of Cp4.1LG00g04300 vs. TrEMBL
Match: W9RHQ2_9ROSA (Histone OS=Morus notabilis GN=L484_024560 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.7e-45
Identity = 150/235 (63.83%), Postives = 165/235 (70.21%), Query Frame = 1


Query: 28  SKSKKAAASKASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSEE 87
           S++  AAA  A   K  +  K+ +SSP+HP F EMI+EAIVSLKERTGSSQYAITKF EE
Sbjct: 2   SEAAVAAAPAAKAVKAKTAPKKAKSSPSHPTFHEMITEAIVSLKERTGSSQYAITKFIEE 61

Query: 88  KHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAAAAPVVAKKPASSKLKAA 147
           KHKQLP NF+KLLL HLKKLVAA+KLVKVK S+KLPSARS AA AP  AKKPA+SK KAA
Sbjct: 62  KHKQLPPNFKKLLLYHLKKLVAAEKLVKVKQSFKLPSARSVAAKAPAPAKKPAASKPKAA 121

Query: 148 VSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKP 207
              K AA AK K K A KPK KV AKPKAA K      PKA               APKP
Sbjct: 122 KPAK-AAAAKLKPKAAGKPKAKVAAKPKAAVK------PKA---------------APKP 181

Query: 208 KPAAKPAKVAKTLSRTSPGKKAAPAAKAKK-VAAKKPKTV-KSPARKVQARKVKK 261
           K  AKPAKVA+T SR SPG K APA KAKK V  KKPK+V KSPA+K  A+K KK
Sbjct: 182 KATAKPAKVARTTSRKSPG-KVAPATKAKKAVPVKKPKSVKKSPAKK--AKKAKK 211

[Close]

BLAST of Cp4.1LG00g04300 vs. TrEMBL
Match: F6GXM8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00730 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 8.7e-45
Identity = 162/279 (58.06%), Postives = 186/279 (66.67%), Query Frame = 1


Query: 4   AADPVASSDAPATVAVVAQPAENDSKSKKAAASKAS--KAKKPSGAKRTRSSPTHPPFFE 63
           A +PVA  +A       A+PAE +   K A   KA   KAKKP+GAK+ RS PTHPP+ E
Sbjct: 9   AVEPVAEPEA-------AEPAEENPAPKAAKTKKAKEPKAKKPAGAKKPRSPPTHPPYIE 68

Query: 64  MISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYK 123
           MI+EAIV+LKE++GSSQYAI KF EEKHKQLP NF+KLLL+HLKK VAA KLVKV+ SYK
Sbjct: 69  MITEAIVALKEKSGSSQYAIAKFIEEKHKQLPPNFKKLLLIHLKKFVAAGKLVKVRGSYK 128

Query: 124 LPSARSKA----AAAPV----VAKKP-ASSKLKAAVSVK-KAAVAKPKAKTAVKPKPKVV 183
           LP +R  A     AAP     VA KP  ++K K A + K K A AKPKA     PKPK  
Sbjct: 129 LPPSRPSAPKPTGAAPAKKKAVATKPKTAAKPKEAKNTKAKKAPAKPKASV---PKPKAA 188

Query: 184 AKPKAAAKSKVV-AKPKAVAPAKRKAAEKVKKVA-PKPKPAAKPAKVAKTLSRTSPGKKA 243
           AK KAAAK KV  AKPK   PAK KAA K K V  PKPKP  KPAK A+T +RT+PGKKA
Sbjct: 189 AKTKAAAKPKVAPAKPK--VPAKPKAAAKTKTVTKPKPKPKEKPAKAARTSTRTTPGKKA 248

Query: 244 APAAKA------KKVAAK--KPKTVKSPARKVQARKVKK 261
           AP   A      KK  AK  KPK+VKSPA+K  A+K KK
Sbjct: 249 APPKPALKKTPVKKAPAKSVKPKSVKSPAKKAAAKKAKK 275

[Close]

BLAST of Cp4.1LG00g04300 vs. TAIR10
Match: AT2G30620.1 (AT2G30620.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 146.4 bits (368), Expect = 2.5e-35
Identity = 136/253 (53.75%), Postives = 163/253 (64.43%), Query Frame = 1


Query: 22  QPAENDSKSKKAAASKASKAK-KPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYA 81
           +PA    KSKK   +KA+K   K +   + +++ +HP + EMI +AIV+LKERTGSSQYA
Sbjct: 27  KPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYA 86

Query: 82  ITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAA---AAPVVAK 141
           I KF EEKHK LP  FRKLLLV+LK+LVA++KLVKVK S+K+PSARS A    AAPV  K
Sbjct: 87  IQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAPVKKK 146

Query: 142 KPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKSKVVAKPKA-VAPAKRK- 201
               +K K  V+   AAVA  KAK A K   K  AK    AK+KV AKPKA V  AK K 
Sbjct: 147 ATVVAKPKGKVA---AAVAPAKAKAAAKGTKKPAAK--VVAKAKVTAKPKAKVTAAKPKS 206

Query: 202 ----AAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKK-AAPAAK---AKKVAAKKPKTVK 261
               A  K K VA KPK   +PAK ++T +RTSPGKK AAPA K    KK  AK  K VK
Sbjct: 207 KSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVK-VK 266

[Close]

BLAST of Cp4.1LG00g04300 vs. TAIR10
Match: AT1G06760.1 (AT1G06760.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 138.7 bits (348), Expect = 5.3e-33
Identity = 136/264 (51.52%), Postives = 161/264 (60.98%), Query Frame = 1


Query: 10  SSDAPAT-VAVVAQPAENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFFEMISEAIV 69
           ++DAP T  AV  +PA    K+K     K  K    +  KRT SS  HP + EMI +AIV
Sbjct: 17  AADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSS--HPTYEEMIKDAIV 76

Query: 70  SLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSK 129
           +LKERTGSSQYAI KF EEK K+LP  FRKLLL++LK+LVA+ KLVKVK S+KLPSA +K
Sbjct: 77  TLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSASAK 136

Query: 130 AAAAPVVAKKPASSKLK-AAVSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKSKVVAKPK 189
           A++    A+K A +K K A V+V K   AK K   A K K  +  KPK AA  KV AK K
Sbjct: 137 ASSPKAAAEKSAPAKKKPATVAVTK---AKRKVAAASKAKKTIAVKPKTAAAKKVTAKAK 196

Query: 190 A-VAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAK-------AKKVA 249
           A   P    AA K K V  KPK  A+PAK AKT   TSP KKA  A K        KK  
Sbjct: 197 AKPVPRATAAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATKKKTP 256

Query: 250 AK---KPKTVKSPARKVQARKVKK 261
            K   KPKTVKSPA++  +R VKK
Sbjct: 257 VKKVVKPKTVKSPAKRASSR-VKK 274

[Close]

BLAST of Cp4.1LG00g04300 vs. TAIR10
Match: AT2G18050.1 (AT2G18050.1 histone H1-3)

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-10
Identity = 64/164 (39.02%), Postives = 87/164 (53.05%), Query Frame = 1


Query: 37  KASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKQ-LPSN 96
           K   AKKP   K T    THPP+F+MI EA++ LKE+ GSS YAI K  EEKHK  LP +
Sbjct: 9   KTPAAKKPRKPKTT----THPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPES 68

Query: 97  FRKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAV 156
           FRK L + LK  VA  KLVK++ SYKL            +  +    K K  +  +   +
Sbjct: 69  FRKTLSLQLKNSVAKGKLVKIRASYKLSDTTK-------MITRQQDKKNKKNMKQEDKEI 128

Query: 157 AKPKAKTAVKPKPKV-VAKPKAAAKSKVVAKPKAV--APAKRKA 197
            K    ++ +PK  V V K +   K K   +PK++  +  K+KA
Sbjct: 129 TKRTRSSSTRPKKTVSVNKQEKKRKVKKARQPKSIKSSVGKKKA 161

[Close]

BLAST of Cp4.1LG00g04300 vs. NCBI nr
Match: gi|659070684|ref|XP_008456174.1| (PREDICTED: histone H1-like [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 2.0e-90
Identity = 226/267 (84.64%), Postives = 231/267 (86.52%), Query Frame = 1


Query: 1   MSSAADPVASSDAPATV-AVVAQPAENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPF 60
           MSSAADPV SSDAPA   A VAQPAENDSKSKKAAASKASKAKKPSGAK+ RSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  FEMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120
            +MISEAIVSLKERTGSSQYAITKF+EEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARS----KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVA--K 180
           YKLPSARS     AAAAPV  KKP SSKLKA  S+KK AVAKPKAKTA K KPK VA  K
Sbjct: 121 YKLPSARSIQAKAAAAAPVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKSKPKAVAKPK 180

Query: 181 PKAAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAA 240
           PK   KSK VAKPK    AK KAAEKVKKVAPKPK  AK  KVAKTLSRTSPGK+AAPAA
Sbjct: 181 PKTVTKSKTVAKPKTA--AKTKAAEKVKKVAPKPKAGAKATKVAKTLSRTSPGKRAAPAA 240

Query: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 261
           KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of Cp4.1LG00g04300 vs. NCBI nr
Match: gi|449442955|ref|XP_004139246.1| (PREDICTED: histone H1-like [Cucumis sativus])

HSP 1 Score: 337.8 bits (865), Expect = 1.7e-89
Identity = 228/268 (85.07%), Postives = 235/268 (87.69%), Query Frame = 1


Query: 1   MSSAADPVASSDAPATVAVVAQPAENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60
           MSSAAD V  SDAPA  A VAQPAENDSK+KKAAASKASKAKKPSGAK+ RSSPTHPPF 
Sbjct: 1   MSSAADSVIISDAPA--AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFL 60

Query: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNSY
Sbjct: 61  QMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSY 120

Query: 121 KLPSARS------KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVA-- 180
           KLPSARS       AAAAPV AKKP SSKLKAA S+KKAAVAK KAKTA KPKPK VA  
Sbjct: 121 KLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAA-SIKKAAVAKSKAKTAAKPKPKAVAKP 180

Query: 181 KPKAAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPA 240
           KPK  AKSK VAKPK    AK KAAEKVKKVAPKPKPAAK AKVAKTLSRTSPGK+AAPA
Sbjct: 181 KPKTVAKSKTVAKPKTA--AKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPA 240

Query: 241 AKAKKVAAKKPKTVKSPARKVQARKVKK 261
            KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 TKAKKVAAKKPKTVKSPARKVQARKVKK 263

[Close]

BLAST of Cp4.1LG00g04300 vs. NCBI nr
Match: gi|700205672|gb|KGN60791.1| (hypothetical protein Csa_2G010270 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 2.1e-76
Identity = 208/268 (77.61%), Postives = 214/268 (79.85%), Query Frame = 1


Query: 1   MSSAADPVASSDAPATVAVVAQPAENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60
           MSSAAD V  SDAPA  A VAQPAENDSK+KKAAASKASKAKKPSGAK+ RSSPTHPPF 
Sbjct: 1   MSSAADSVIISDAPA--AAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFL 60

Query: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHKQLPSNFRKLLLVHLKKLVAA+KLVKVKNSY
Sbjct: 61  QMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSY 120

Query: 121 KLPSARS------KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVA-- 180
           KLPSARS       AAAAPV AKKP SSKLKAA S+KKAAVAK KAKTA KPKPK VA  
Sbjct: 121 KLPSARSIQAKAAAAAAAPVTAKKPVSSKLKAA-SIKKAAVAKSKAKTAAKPKPKAVAKP 180

Query: 181 KPKAAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPA 240
           KPK  AKSK VAKPK    AK KAAEKVKKVAPKPK                      PA
Sbjct: 181 KPKTVAKSKTVAKPKTA--AKTKAAEKVKKVAPKPK----------------------PA 240

Query: 241 AKAKKVAAKKPKTVKSPARKVQARKVKK 261
           AKA KVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 AKAAKVAAKKPKTVKSPARKVQARKVKK 241

[Close]

BLAST of Cp4.1LG00g04300 vs. NCBI nr
Match: gi|225463948|ref|XP_002270211.1| (PREDICTED: histone H1 [Vitis vinifera])

HSP 1 Score: 203.4 bits (516), Expect = 4.9e-49
Identity = 172/299 (57.53%), Postives = 196/299 (65.55%), Query Frame = 1


Query: 1   MSSAADPVASSDAPATVAVVAQPAEND----SKSKKAAASKASKAKKPSGAKRTRSSPTH 60
           M+SA   V++ +      V   P EN     SK+KKA A K  KAKKP+ AK+ +S  TH
Sbjct: 1   MASAEIAVSAVEVVVDPPVTEPPVENQTGRKSKAKKAKAPKEPKAKKPA-AKKPKSPSTH 60

Query: 61  PPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKV 120
           PPF EMI+EAIV+LKERTGSSQYAITKF EEKHK+LPSNFRKLLLVHLKKLVA++KLVKV
Sbjct: 61  PPFLEMITEAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKV 120

Query: 121 KNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVAKPKA 180
           KNSYKLPS+RS  + A   AKKPA++K K     K  A AKPKA  A KPKPK   KPKA
Sbjct: 121 KNSYKLPSSRSAPSKA---AKKPAAAKPKPTKPAK--APAKPKA--AAKPKPKATTKPKA 180

Query: 181 AAKSKVV-AKPKAVAPAKRKAAEKVKKV-------------------------APKPKPA 240
           AAKSK    KPKA APAK KAA K K V                          PK KPA
Sbjct: 181 AAKSKAAPVKPKA-APAKPKAAVKPKAVPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPA 240

Query: 241 AKPAKVAKTLSRTSPGKK---------AAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 261
           A+PAK A+T +RT+PGKK         AAPAAK KK  AKKPK++KSPA+K  ARK KK
Sbjct: 241 ARPAKAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK 290

[Close]

BLAST of Cp4.1LG00g04300 vs. NCBI nr
Match: gi|147822817|emb|CAN77274.1| (hypothetical protein VITISV_018553 [Vitis vinifera])

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-48
Identity = 173/299 (57.86%), Postives = 197/299 (65.89%), Query Frame = 1


Query: 1   MSSAADPVASSDAPATVAVVAQPAEND----SKSKKAAASKASKAKKPSGAKRTRSSPTH 60
           M+SA   V++ +      V   P EN     SK+KKA A K  KAKKP+ AK+ +S  TH
Sbjct: 1   MASAEIAVSAVEVVVDPPVTEPPVENQTGRKSKAKKAKAPKEPKAKKPA-AKKPKSPSTH 60

Query: 61  PPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKV 120
           PPF EMI+EAIV+LKERTGSSQYAITKF EEKHK+LPSNFRKLLLVHLKKLVA++KLVKV
Sbjct: 61  PPFLEMITEAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKV 120

Query: 121 KNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVAKPKA 180
           KNSYKLPS+RS  + A   AKKPA++K K     K  A AKPKA  A KPKPK   KPKA
Sbjct: 121 KNSYKLPSSRSAPSKA---AKKPAAAKPKPTKPAK--APAKPKA--AAKPKPKATTKPKA 180

Query: 181 AAKSKVV-AKPKAVAPAKRKAAEKVK---------------KVAPKP----------KPA 240
           AAKSK    KPKA APAK KAA K K               K  PKP          KPA
Sbjct: 181 AAKSKAAPVKPKA-APAKPKAAVKPKAAPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPA 240

Query: 241 AKPAKVAKTLSRTSPGKK---------AAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 261
           A+PAK A+T +RT+PGKK         AAPAAK KK  AKKPK++KSPA+K  ARK KK
Sbjct: 241 ARPAKAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK 290

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g04300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H1_SOLLC	6.4e-41	52.50	Histone H1 OS=Solanum lycopersicum PE=3 SV=1	[more]
H1_EUPES	5.6e-37	57.26	Histone H1 OS=Euphorbia esula PE=2 SV=1	[more]
H12_ARATH	4.5e-34	53.75	Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1	[more]
H1_PEA	2.2e-33	51.23	Histone H1 OS=Pisum sativum PE=2 SV=1	[more]
H11_ARATH	9.3e-32	51.52	Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=1 SV=1	[more]

BLAST of Cp4.1LG00g04300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLA4_CUCSA	1.5e-76	77.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010270 PE=3 SV=1	[more]
F6HVJ1_VITVI	3.4e-49	57.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00500 PE=3 SV=...	[more]
A5BTS5_VITVI	7.6e-49	57.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018553 PE=3 SV=1	[more]
W9RHQ2_9ROSA	6.7e-45	63.83	Histone OS=Morus notabilis GN=L484_024560 PE=3 SV=1	[more]
F6GXM8_VITVI	8.7e-45	58.06	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00730 PE=3 SV=...	[more]

BLAST of Cp4.1LG00g04300 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30620.1	2.5e-35	53.75	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	5.3e-33	51.52	winged-helix DNA-binding transcription factor family protein	[more]
AT2G18050.1	3.7e-10	39.02	histone H1-3	[more]

BLAST of Cp4.1LG00g04300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070684\|ref\|XP_008456174.1\|	2.0e-90	84.64	PREDICTED: histone H1-like [Cucumis melo]	[more]
gi\|449442955\|ref\|XP_004139246.1\|	1.7e-89	85.07	PREDICTED: histone H1-like [Cucumis sativus]	[more]
gi\|700205672\|gb\|KGN60791.1\|	2.1e-76	77.61	hypothetical protein Csa_2G010270 [Cucumis sativus]	[more]
gi\|225463948\|ref\|XP_002270211.1\|	4.9e-49	57.53	PREDICTED: histone H1 [Vitis vinifera]	[more]
gi\|147822817\|emb\|CAN77274.1\|	1.1e-48	57.86	hypothetical protein VITISV_018553 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR005819	Histone_H5
IPR005818	Histone_H1/H5_H15

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g04300.1	Cp4.1LG00g04300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 56..122 score: 9.2
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 53..119 score: 1.0
IPR005818	Linker histone H1/H5, domain H15	PROFILE	PS51504	H15	coord: 55..124 score: 27
IPR005819	Histone H5	PRINTS	PR00624	HISTONEH5	coord: 197..216 score: 1.2E-11coord: 175..192 score: 1.2E-11coord: 69..86 score: 1.2E-11coord: 42..63 score: 1.2E-11coord: 145..159 score: 1.2
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 52..128 score: 2.2
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 52..130 score: 1.74
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 36..257 score: 2.8E-60coord: 1..18 score: 2.8
None	No IPR available	PANTHER	PTHR11467:SF54	SUBFAMILY NOT NAMED	coord: 36..257 score: 2.8E-60coord: 1..18 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g04300	Cucsa.133120	Cucumber (Gy14) v1	cgycpeB0350
Cp4.1LG00g04300	CmaCh12G011310	Cucurbita maxima (Rimu)	cmacpeB165
Cp4.1LG00g04300	CmaCh05G012130	Cucurbita maxima (Rimu)	cmacpeB760
Cp4.1LG00g04300	CmoCh05G012360	Cucurbita moschata (Rifu)	cmocpeB714
Cp4.1LG00g04300	CmoCh12G011510	Cucurbita moschata (Rifu)	cmocpeB141
Cp4.1LG00g04300	Cla019793	Watermelon (97103) v1	cpewmB016
Cp4.1LG00g04300	Csa2G010270	Cucumber (Chinese Long) v2	cpecuB007
Cp4.1LG00g04300	MELO3C004394	Melon (DHL92) v3.5.1	cpemeB009
Cp4.1LG00g04300	ClCG02G016780	Watermelon (Charleston Gray)	cpewcgB010
Cp4.1LG00g04300	CSPI02G02820	Wild cucumber (PI 183967)	cpecpiB005
Cp4.1LG00g04300	Lsi11G004310	Bottle gourd (USVL1VR-Ls)	cpelsiB004
Cp4.1LG00g04300	MELO3C004394.2	Melon (DHL92) v3.6.1	cpemedB011
Cp4.1LG00g04300	CsaV3_2G003970	Cucumber (Chinese Long) v3	cpecucB0007
Cp4.1LG00g04300	Bhi06G001535	Wax gourd	cpewgoB0007
Cp4.1LG00g04300	CsGy2G002930	Cucumber (Gy14) v2	cgybcpeB152
Cp4.1LG00g04300	Carg22992	Silver-seed gourd	carcpeB1493
Cp4.1LG00g04300	Carg17604	Silver-seed gourd	carcpeB1003

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG00g04300	Cp4.1LG11g09850	Cucurbita pepo (Zucchini)	cpecpeB000
Cp4.1LG00g04300	Cp4.1LG07g09790	Cucurbita pepo (Zucchini)	cpecpeB015

The following block(s) are covering this gene:

None