Cucsa.128390 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.128390
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold01024 : 416633 .. 417214 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCCTCTTCATCTTCTTCCTCAAGGTTCAGAAATCCCTTAAAAATGGCGTAACAATCATTTCTCCATCTCTCCGCCGCTAAAATCACTTTTCACTATGAATTCCATTTTCTCCTCCATTCAATTCCGTCTTCTTCCATCACCAAATCCACGACAACCACAACATAATCTCCACATCTTCCACCAAATTTATCTTCCTCCACAAATAACCCACCGTTTCAGTTCAATAAAGACCAATTCAATTCTTCCAACTTCTCTAATTCTTGGAAACAGCACTATTCCTCCGTCGCAATCCGGCGACATTTCAGTCCTCCTCCCGATAAGGTTAGCCGAATTTCTCCTTACTCAGAATAAACTAATTAAAATTTCTTATTTGTGTTTTGGGTAATTTGTGCACAGCGGCGTGCTACTGATTGCGTATTTGCTAGCGAATTTCATTTTCCCGGAGTTTATTATGAAATCATACCGATCTGATGATGAGAACGACGGGAAGGGTGGAGGTGGAAGATGAAGAGAATGAAGCGGTAGAAGGAGATAATGAAACTTGAAGATTTAGCCATAAATTGAATTGAATTTAAGATTT

mRNA sequence

TTTCCTCTTCATCTTCTTCCTCAAGGTTCAGAAATCCCTTAAAAATGGCGTAACAATCATTTCTCCATCTCTCCGCCGCTAAAATCACTTTTCACTATGAATTCCATTTTCTCCTCCATTCAATTCCGTCTTCTTCCATCACCAAATCCACGACAACCACAACATAATCTCCACATCTTCCACCAAATTTATCTTCCTCCACAAATAACCCACCGTTTCAGTTCAATAAAGACCAATTCAATTCTTCCAACTTCTCTAATTCTTGGAAACAGCACTATTCCTCCGTCGCAATCCGGCGACATTTCAGTCCTCCTCCCGATAAGCGGCGTGCTACTGATTGCGTATTTGCTAGCGAATTTCATTTTCCCGGAGTTTATTATGAAATCATACCGATCTGATGATGAGAACGACGGGAAGGGTGGAGGTGGAAGATGAAGAGAATGAAGCGGTAGAAGGAGATAATGAAACTTGAAGATTTAGCCATAAATTGAATTGAATTTAAGATTT

Coding sequence (CDS)

ATGAATTCCATTTTCTCCTCCATTCAATTCCGTCTTCTTCCATCACCAAATCCACGACAACCACAACATAATCTCCACATCTTCCACCAAATTTATCTTCCTCCACAAATAACCCACCGTTTCAGTTCAATAAAGACCAATTCAATTCTTCCAACTTCTCTAATTCTTGGAAACAGCACTATTCCTCCGTCGCAATCCGGCGACATTTCAGTCCTCCTCCCGATAAGCGGCGTGCTACTGATTGCGTATTTGCTAGCGAATTTCATTTTCCCGGAGTTTATTATGAAATCATACCGATCTGATGATGAGAACGACGGGAAGGGTGGAGGTGGAAGATGA

Protein sequence

MNSIFSSIQFRLLPSPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPTSLILGNSTIPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDENDGKGGGGR*

Homology

[Close]

BLAST of Cucsa.128390 vs. TrEMBL
Match: A0A0A0K9M2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420170 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 5.7e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MNSIFSSIQFRLLPSPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPTSLILGNST 60
           MNSIFSSIQFRLLPSPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPTSLILGNST
Sbjct: 1   MNSIFSSIQFRLLPSPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPTSLILGNST 60

Query: 61  IPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDENDGKGGGGR 113
           IPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDENDGKGGGGR
Sbjct: 61  IPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDENDGKGGGGR 112

[Close]

BLAST of Cucsa.128390 vs. TrEMBL
Match: B9SV97_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1303160 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.5e-09
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1


Query: 36  QITHRFSSIKTNSILPTSLILGNSTIPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIM 95
           ++  R  S++TN++ P  LIL  ST  P+Q GDISVLLP  G+LL  Y +ANF+ P FI 
Sbjct: 36  KLDQRVLSVRTNAV-PNPLILAEST-SPAQGGDISVLLPTGGLLLFVYGIANFVVPFFIS 95

Query: 96  KSYRSDDENDGKG 109
           KS+ SD E +  G
Sbjct: 96  KSFESDKETEDSG 106

[Close]

BLAST of Cucsa.128390 vs. TrEMBL
Match: A0A151U2D8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_006049 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 1


Query: 8   IQFRLLPSPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPTSLILGNSTIPPSQSG 67
           +Q  LLP P   + +H   +F      PQ    F S+   S L T  +     + P++SG
Sbjct: 6   LQSSLLPFPAKLKLRHTTKLFQISTHKPQRAQHFPSV---SPLSTKALPHLMVVAPAKSG 65

Query: 68  DISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDEND 106
           D+S LLPIS VL+ AYL+ANF+ P F+  S+  D  N+
Sbjct: 66  DLSTLLPISAVLVSAYLIANFVVPGFLTNSFGYDKSNE 100

[Close]

BLAST of Cucsa.128390 vs. TrEMBL
Match: A0A067KSN4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00909 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 44/111 (39.64%), Postives = 57/111 (51.35%), Query Frame = 1


Query: 1   MNSIFSSIQFRLLPSPNPRQPQHNLHIFHQIYLPP---QITHRFSSIKTNSILP---TSL 60
           M  IF S  F LL  P P QP +     H++  P    ++ H    ++T  I     T L
Sbjct: 1   MKCIFHS-SFPLL-YPYPNQPFNT----HKLLCPSTQTKLAHTTIPVRTRVIATATTTPL 60

Query: 61  ILGNSTIPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDEND 106
           IL   T P + +GDISVLL   G+LL  Y +ANF+FP FI KS   D E +
Sbjct: 61  ILVTDTFPANSNGDISVLLQTGGLLLFVYGIANFVFPAFISKSLEFDKETE 105

[Close]

BLAST of Cucsa.128390 vs. TrEMBL
Match: K7KBG7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G292400 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-06
Identity = 37/103 (35.92%), Postives = 49/103 (47.57%), Query Frame = 1


Query: 8   IQFRLLP-----SPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPTSLILGNSTIP 67
           +Q  LLP      P P    H   I    + P       S   T   LP S++     + 
Sbjct: 6   LQSSLLPLHAKLKPQPNHTSHTSQIIRAQHFPLA-----SDPLTTKALPHSMV-----VA 65

Query: 68  PSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDEND 106
           P+QSGD+S  LPIS VLL AY +ANF+ P F+  S+  D  N+
Sbjct: 66  PAQSGDLSTFLPISAVLLSAYFIANFVVPGFLTNSFGYDKSNE 98

[Close]

BLAST of Cucsa.128390 vs. TAIR10
Match: AT1G50732.1 (AT1G50732.1 unknown protein.)

HSP 1 Score: 48.9 bits (115), Expect = 2.4e-06
Identity = 19/47 (40.43%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 59  STIPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDEND 106
           S +PPS+SGDI+  L +SG ++  YL+ NF+ P  + KS + ++E +
Sbjct: 67  SVLPPSESGDITTFLFVSGAMISMYLVTNFLVPSLLFKSLQGEEEEE 113

[Close]

BLAST of Cucsa.128390 vs. NCBI nr
Match: gi|700189839|gb|KGN45072.1| (hypothetical protein Csa_7G420170 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 8.1e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MNSIFSSIQFRLLPSPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPTSLILGNST 60
           MNSIFSSIQFRLLPSPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPTSLILGNST
Sbjct: 1   MNSIFSSIQFRLLPSPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPTSLILGNST 60

Query: 61  IPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDENDGKGGGGR 113
           IPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDENDGKGGGGR
Sbjct: 61  IPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDENDGKGGGGR 112

[Close]

BLAST of Cucsa.128390 vs. NCBI nr
Match: gi|255578092|ref|XP_002529916.1| (PREDICTED: uncharacterized protein LOC8266243 [Ricinus communis])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1


Query: 36  QITHRFSSIKTNSILPTSLILGNSTIPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIM 95
           ++  R  S++TN++ P  LIL  ST  P+Q GDISVLLP  G+LL  Y +ANF+ P FI 
Sbjct: 36  KLDQRVLSVRTNAV-PNPLILAEST-SPAQGGDISVLLPTGGLLLFVYGIANFVVPFFIS 95

Query: 96  KSYRSDDENDGKG 109
           KS+ SD E +  G
Sbjct: 96  KSFESDKETEDSG 106

[Close]

BLAST of Cucsa.128390 vs. NCBI nr
Match: gi|1012362241|gb|KYP73424.1| (hypothetical protein KK1_006049 [Cajanus cajan])

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 1


Query: 8   IQFRLLPSPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPTSLILGNSTIPPSQSG 67
           +Q  LLP P   + +H   +F      PQ    F S+   S L T  +     + P++SG
Sbjct: 6   LQSSLLPFPAKLKLRHTTKLFQISTHKPQRAQHFPSV---SPLSTKALPHLMVVAPAKSG 65

Query: 68  DISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDEND 106
           D+S LLPIS VL+ AYL+ANF+ P F+  S+  D  N+
Sbjct: 66  DLSTLLPISAVLVSAYLIANFVVPGFLTNSFGYDKSNE 100

[Close]

BLAST of Cucsa.128390 vs. NCBI nr
Match: gi|802588385|ref|XP_012070858.1| (PREDICTED: uncharacterized protein LOC105632981 [Jatropha curcas])

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 44/111 (39.64%), Postives = 57/111 (51.35%), Query Frame = 1


Query: 1   MNSIFSSIQFRLLPSPNPRQPQHNLHIFHQIYLPP---QITHRFSSIKTNSILP---TSL 60
           M  IF S  F LL  P P QP +     H++  P    ++ H    ++T  I     T L
Sbjct: 1   MKCIFHS-SFPLL-YPYPNQPFNT----HKLLCPSTQTKLAHTTIPVRTRVIATATTTPL 60

Query: 61  ILGNSTIPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDEND 106
           IL   T P + +GDISVLL   G+LL  Y +ANF+FP FI KS   D E +
Sbjct: 61  ILVTDTFPANSNGDISVLLQTGGLLLFVYGIANFVFPAFISKSLEFDKETE 105

[Close]

BLAST of Cucsa.128390 vs. NCBI nr
Match: gi|356501544|ref|XP_003519584.1| (PREDICTED: uncharacterized protein LOC100798628 [Glycine max])

HSP 1 Score: 58.9 bits (141), Expect = 6.5e-06
Identity = 37/103 (35.92%), Postives = 49/103 (47.57%), Query Frame = 1


Query: 8   IQFRLLP-----SPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPTSLILGNSTIP 67
           +Q  LLP      P P    H   I    + P       S   T   LP S++     + 
Sbjct: 6   LQSSLLPLHAKLKPQPNHTSHTSQIIRAQHFPLA-----SDPLTTKALPHSMV-----VA 65

Query: 68  PSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDEND 106
           P+QSGD+S  LPIS VLL AY +ANF+ P F+  S+  D  N+
Sbjct: 66  PAQSGDLSTFLPISAVLLSAYFIANFVVPGFLTNSFGYDKSNE 98

The following BLAST results are available for this feature:

BLAST of Cucsa.128390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9M2_CUCSA	5.7e-57	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420170 PE=4 SV=1	[more]
B9SV97_RICCO	7.5e-09	49.32	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1303160 PE=4 SV=1	[more]
A0A151U2D8_CAJCA	1.1e-07	37.76	Uncharacterized protein OS=Cajanus cajan GN=KK1_006049 PE=4 SV=1	[more]
A0A067KSN4_JATCU	1.2e-06	39.64	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00909 PE=4 SV=1	[more]
K7KBG7_SOYBN	4.5e-06	35.92	Uncharacterized protein OS=Glycine max GN=GLYMA_02G292400 PE=4 SV=1	[more]

BLAST of Cucsa.128390 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50732.1	2.4e-06	40.43	unknown protein.	[more]

BLAST of Cucsa.128390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189839\|gb\|KGN45072.1\|	8.1e-57	100.00	hypothetical protein Csa_7G420170 [Cucumis sativus]	[more]
gi\|255578092\|ref\|XP_002529916.1\|	1.1e-08	49.32	PREDICTED: uncharacterized protein LOC8266243 [Ricinus communis]	[more]
gi\|1012362241\|gb\|KYP73424.1\|	1.6e-07	37.76	hypothetical protein KK1_006049 [Cajanus cajan]	[more]
gi\|802588385\|ref\|XP_012070858.1\|	1.7e-06	39.64	PREDICTED: uncharacterized protein LOC105632981 [Jatropha curcas]	[more]
gi\|356501544\|ref\|XP_003519584.1\|	6.5e-06	35.92	PREDICTED: uncharacterized protein LOC100798628 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.128390.1	Cucsa.128390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37196	FAMILY NOT NAMED	coord: 61..105 score: 8.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.128390	Csa7G420170	Cucumber (Chinese Long) v2	cgycuB177
Cucsa.128390	MELO3C023604	Melon (DHL92) v3.5.1	cgymeB205
Cucsa.128390	CSPI07G18700	Wild cucumber (PI 183967)	cgycpiB180
Cucsa.128390	MELO3C023604.2	Melon (DHL92) v3.6.1	cgymedB202
Cucsa.128390	CsaV3_7G030520	Cucumber (Chinese Long) v3	cgycucB181

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.128390	Watermelon (97103) v2	cgywmbB206
Cucsa.128390	Wax gourd	cgywgoB238
Cucsa.128390	Cucurbita maxima (Rimu)	cgycmaB0346
Cucsa.128390	Cucurbita maxima (Rimu)	cgycmaB0347
Cucsa.128390	Cucurbita maxima (Rimu)	cgycmaB0348
Cucsa.128390	Cucurbita moschata (Rifu)	cgycmoB0340
Cucsa.128390	Cucurbita moschata (Rifu)	cgycmoB0341
Cucsa.128390	Cucurbita moschata (Rifu)	cgycmoB0342
Cucsa.128390	Watermelon (Charleston Gray)	cgywcgB208
Cucsa.128390	Watermelon (97103) v1	cgywmB212
Cucsa.128390	Cucurbita pepo (Zucchini)	cgycpeB0334
Cucsa.128390	Cucurbita pepo (Zucchini)	cgycpeB0335
Cucsa.128390	Bottle gourd (USVL1VR-Ls)	cgylsiB199
Cucsa.128390	Silver-seed gourd	carcgyB0131
Cucsa.128390	Silver-seed gourd	carcgyB0521
Cucsa.128390	Silver-seed gourd	carcgyB0857