MELO3C023604.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023604.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Glutathione transport system permease gsiD
Location	chr01 : 33211779 .. 33212752 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAAAGTTAAAAAAGATAAAAATAAAGATAAAAGATTCTCTATCGTTCACTCACATTCCTTCCTCACCTTTCCTCTTCATCTTCGTCATCTTCGTCAAGGTTGAGAAATTCCTTAAAAATGGCGTAACAAGCACTTCTCCATCTCTCCGCCCCTAAAAAATCTACTTCCACTATGAATTCTATTTTCTCCTCCATTGAATTCCGTCTTCTACCATCACCAAATCCACCACAACCACAACATAATCTCCACATCTTCCACCAAATTCATCTTTCTCCTCAAACGACCTACCGTTTCAATTCAATAAAGACCAATTCAATTCTTCCAACTAATTCTTTAATTCTTGGAAACAGCACTATTCCTCCGGCACAATCCGGCGACATTTCTGTCCTACTCCAGACAAGGTTAGCCAAATTTCTCCTTTGTTTAAATTTGGATAACCGATGCACAAAGTACTGAGAAGAACTAATATATGAGACAATTAATCTCTTAAAATTTCTTAAATATATATATATATATTTGGGTAATTTGTGCAGCGGCGTACTTCTGATTGCGTATTTGATAGCGAATTTCATTTTCCCGGAGTTTATTATGAAGTCATACCGATCTGATGATGAGAGCGAGGGGAAGGGTGGGGGTGGAAGATGAAGAATCAAGCGGAGGGAGGAAGAAGCTTCATTTTATATTTGTGTGTAAGAAAATTGGGATAATATTATTGGGTTCACTGATTTTATTTTCCCATTTTGATTGAAAAGGGTAGTTCTTGTAGTTTATTTTTGAAAAATTTCAGACATATTTGTGGAAAGTAGAAGATGAAGATGAAAGGTGGGTTTTGAGAGGAAGAGAGAAAGGATAAGAAATGAGTTCCCATGAGAAAAAAAATTGTTAACTAAACTCTTCTTAAAATGTCCATTTGTTACTCTCTATTTTTTTTTTTATTATTATTATTAAATTATAAAACTATTTAATTTTCA

mRNA sequence

TTTAAAAGTTAAAAAAGATAAAAATAAAGATAAAAGATTCTCTATCGTTCACTCACATTCCTTCCTCACCTTTCCTCTTCATCTTCGTCATCTTCGTCAAGGTTGAGAAATTCCTTAAAAATGGCGTAACAAGCACTTCTCCATCTCTCCGCCCCTAAAAAATCTACTTCCACTATGAATTCTATTTTCTCCTCCATTGAATTCCGTCTTCTACCATCACCAAATCCACCACAACCACAACATAATCTCCACATCTTCCACCAAATTCATCTTTCTCCTCAAACGACCTACCGTTTCAATTCAATAAAGACCAATTCAATTCTTCCAACTAATTCTTTAATTCTTGGAAACAGCACTATTCCTCCGGCACAATCCGGCGACATTTCTGTCCTACTCCAGACAAGCGGCGTACTTCTGATTGCGTATTTGATAGCGAATTTCATTTTCCCGGAGTTTATTATGAAGTCATACCGATCTGATGATGAGAGCGAGGGGAAGGGTGGGGGTGGAAGATGAAGAATCAAGCGGAGGGAGGAAGAAGCTTCATTTTATATTTGTGTGTAAGAAAATTGGGATAATATTATTGGGTTCACTGATTTTATTTTCCCATTTTGATTGAAAAGGGTAGTTCTTGTAGTTTATTTTTGAAAAATTTCAGACATATTTGTGGAAAGTAGAAGATGAAGATGAAAGGTGGGTTTTGAGAGGAAGAGAGAAAGGATAAGAAATGAGTTCCCATGAGAAAAAAAATTGTTAACTAAACTCTTCTTAAAATGTCCATTTGTTACTCTCTATTTTTTTTTTTATTATTATTATTAAATTATAAAACTATTTAATTTTCA

Coding sequence (CDS)

ATGAATTCTATTTTCTCCTCCATTGAATTCCGTCTTCTACCATCACCAAATCCACCACAACCACAACATAATCTCCACATCTTCCACCAAATTCATCTTTCTCCTCAAACGACCTACCGTTTCAATTCAATAAAGACCAATTCAATTCTTCCAACTAATTCTTTAATTCTTGGAAACAGCACTATTCCTCCGGCACAATCCGGCGACATTTCTGTCCTACTCCAGACAAGCGGCGTACTTCTGATTGCGTATTTGATAGCGAATTTCATTTTCCCGGAGTTTATTATGAAGTCATACCGATCTGATGATGAGAGCGAGGGGAAGGGTGGGGGTGGAAGATGA

Protein sequence

MNSIFSSIEFRLLPSPNPPQPQHNLHIFHQIHLSPQTTYRFNSIKTNSILPTNSLILGNSTIPPAQSGDISVLLQTSGVLLIAYLIANFIFPEFIMKSYRSDDESEGKGGGGR

Homology

[Close]

BLAST of MELO3C023604.2 vs. NCBI nr
Match: KGN45072.1 (hypothetical protein Csa_7G420170 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 2.5e-46
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MNSIFSSIEFRLLPSPNPPQPQHNLHIFHQIHLSPQTTYRFNSIKTNSILPTNSLILGNS 60
           MNSIFSSI+FRLLPSPNP QPQHNLHIFHQI+L PQ T+RF+SIKTNSILPT SLILGNS
Sbjct: 1   MNSIFSSIQFRLLPSPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPT-SLILGNS 60

Query: 61  TIPPAQSGDISVLLQTSGVLLIAYLIANFIFPEFIMKSYRSDDESEGKGGGGR 114
           TIPP+QSGDISVLL  SGVLLIAYL+ANFIFPEFIMKSYRSDDE++GKGGGGR
Sbjct: 61  TIPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDENDGKGGGGR 112

[Close]

BLAST of MELO3C023604.2 vs. NCBI nr
Match: XP_022940449.1 (uncharacterized protein LOC111446047 [Cucurbita moschata])

HSP 1 Score: 107.8 bits (268), Expect = 2.4e-20
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MNSIFSSIEFRLLPS---PNPPQ-PQHNLHIFHQIHLSPQTTYRFNSIKTNSILPTNSLI 60
           MN I S+IE  +L S   PN  Q  Q+N     +I++SPQ+  RF S+  N+I   NSL+
Sbjct: 18  MNCITSAIELPVLRSHFKPNRRQRKQNNSQSQPRIYISPQSN-RFASLTANAI--PNSLV 77

Query: 61  LGNSTIPPAQSGDISVLLQTSGVLLIAYLIANFIFPEFIMKSYRSDDESEGK 109
           L NSTIPP+QSGD+SVLLQTSGVLLI YLIANFI PEFIMKSY S DESEGK
Sbjct: 78  LANSTIPPSQSGDVSVLLQTSGVLLIVYLIANFIVPEFIMKSY-STDESEGK 125

[Close]

BLAST of MELO3C023604.2 vs. NCBI nr
Match: XP_023525256.1 (uncharacterized protein LOC111788910 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 68/112 (60.71%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 1   MNSIFSSIEFRLLPS---PNPPQ-PQHNLHIFHQIHLSPQTTYRFNSIKTNSILPTNSLI 60
           MN I S+IE  +L S   PN  Q  Q+N     ++++SPQ+  RF S+  N+I   NSL+
Sbjct: 18  MNCITSAIELPILRSHLKPNRRQRQQNNSQSQPRMYISPQSN-RFASLTANAI--PNSLV 77

Query: 61  LGNSTIPPAQSGDISVLLQTSGVLLIAYLIANFIFPEFIMKSYRSDDESEGK 109
           L NSTIPP+QSGD+SVLLQTSGVLLI Y IANFI PEFIMKSY S DESEGK
Sbjct: 78  LANSTIPPSQSGDVSVLLQTSGVLLIVYFIANFIVPEFIMKSY-STDESEGK 125

[Close]

BLAST of MELO3C023604.2 vs. NCBI nr
Match: XP_022981640.1 (uncharacterized protein LOC111480699 [Cucurbita maxima])

HSP 1 Score: 100.9 bits (250), Expect = 2.9e-18
Identity = 69/112 (61.61%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MNSIFSSIEFRLLPS---PNPPQ-PQHNLHIFHQIHLSPQTTYRFNSIKTNSILPTNSLI 60
           MN I S+IE  +L S   PN  Q  Q+N      I++SPQ+  RF S+  N+I   NSL+
Sbjct: 27  MNCITSAIELPVLRSHFKPNRRQRKQNNSQSQPPIYISPQSN-RFASLTANAI--PNSLV 86

Query: 61  LGNSTIPPAQSGDISVLLQTSGVLLIAYLIANFIFPEFIMKSYRSDDESEGK 109
           L N TIPP+QSGD+SVLLQTSGVLLI YLIANFI PEFIMKSY S DESEGK
Sbjct: 87  LAN-TIPPSQSGDVSVLLQTSGVLLIVYLIANFIVPEFIMKSY-STDESEGK 133

[Close]

BLAST of MELO3C023604.2 vs. NCBI nr
Match: XP_002529916.2 (uncharacterized protein LOC8266243 [Ricinus communis])

HSP 1 Score: 66.6 bits (161), Expect = 6.1e-08
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 40  RFNSIKTNSILPTNSLILGNSTIPPAQSGDISVLLQTSGVLLIAYLIANFIFPEFIMKSY 99
           R  S++TN++   N LIL  ST  PAQ GDISVLL T G+LL  Y IANF+ P FI KS+
Sbjct: 70  RVLSVRTNAV--PNPLILAEST-SPAQGGDISVLLPTGGLLLFVYGIANFVVPFFISKSF 129

Query: 100 RSDDESEGKG 110
            SD E+E  G
Sbjct: 130 ESDKETEDSG 136

[Close]

BLAST of MELO3C023604.2 vs. TAIR10
Match: AT1G50732.1 (unknown protein.)

HSP 1 Score: 43.9 bits (102), Expect = 7.7e-05
Identity = 17/43 (39.53%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 60  STIPPAQSGDISVLLQTSGVLLIAYLIANFIFPEFIMKSYRSD 103
           S +PP++SGDI+  L  SG ++  YL+ NF+ P  + KS + +
Sbjct: 67  SVLPPSESGDITTFLFVSGAMISMYLVTNFLVPSLLFKSLQGE 109

[Close]

BLAST of MELO3C023604.2 vs. TrEMBL
Match: tr|A0A0A0K9M2|A0A0A0K9M2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420170 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.7e-46
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MNSIFSSIEFRLLPSPNPPQPQHNLHIFHQIHLSPQTTYRFNSIKTNSILPTNSLILGNS 60
           MNSIFSSI+FRLLPSPNP QPQHNLHIFHQI+L PQ T+RF+SIKTNSILPT SLILGNS
Sbjct: 1   MNSIFSSIQFRLLPSPNPRQPQHNLHIFHQIYLPPQITHRFSSIKTNSILPT-SLILGNS 60

Query: 61  TIPPAQSGDISVLLQTSGVLLIAYLIANFIFPEFIMKSYRSDDESEGKGGGGR 114
           TIPP+QSGDISVLL  SGVLLIAYL+ANFIFPEFIMKSYRSDDE++GKGGGGR
Sbjct: 61  TIPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDENDGKGGGGR 112

[Close]

BLAST of MELO3C023604.2 vs. TrEMBL
Match: tr|B9SV97|B9SV97_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1303160 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-08
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 40  RFNSIKTNSILPTNSLILGNSTIPPAQSGDISVLLQTSGVLLIAYLIANFIFPEFIMKSY 99
           R  S++TN++   N LIL  ST  PAQ GDISVLL T G+LL  Y IANF+ P FI KS+
Sbjct: 40  RVLSVRTNAV--PNPLILAEST-SPAQGGDISVLLPTGGLLLFVYGIANFVVPFFISKSF 99

Query: 100 RSDDESEGKG 110
            SD E+E  G
Sbjct: 100 ESDKETEDSG 106

[Close]

BLAST of MELO3C023604.2 vs. TrEMBL
Match: tr|A0A067KSN4|A0A067KSN4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00909 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 47/110 (42.73%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 1   MNSIFSSIEFRLLPSPNPPQPQHNLHIFHQIHLSPQTTYRFNSI----KTNSILPTNSLI 60
           M  IF S    L P PN P   H L     +  S QT     +I    +  +   T  LI
Sbjct: 1   MKCIFHSSFPLLYPYPNQPFNTHKL-----LCPSTQTKLAHTTIPVRTRVIATATTTPLI 60

Query: 61  LGNSTIPPAQSGDISVLLQTSGVLLIAYLIANFIFPEFIMKSYRSDDESE 107
           L   T P   +GDISVLLQT G+LL  Y IANF+FP FI KS   D E+E
Sbjct: 61  LVTDTFPANSNGDISVLLQTGGLLLFVYGIANFVFPAFISKSLEFDKETE 105

[Close]

BLAST of MELO3C023604.2 vs. TrEMBL
Match: tr|A0A1R3KBC6|A0A1R3KBC6_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09684 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.6e-07
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 33  LSPQTTYRFNSIKTNSILPTNSLILGNSTIPPAQSGDISVLLQTSGVLLIAYLIANFIFP 92
           L  Q  +   S++TN+I   NSL +G + IPP+QSGDI+V LQTS +LL+ Y +ANF+ P
Sbjct: 40  LQQQNVHSIVSLRTNAI-SHNSLFVG-ANIPPSQSGDITVFLQTSALLLVVYFLANFVAP 99

Query: 93  EFIMKSYRSDDESE 107
            FI K +  D   E
Sbjct: 100 YFISKYFGFDKVGE 111

[Close]

BLAST of MELO3C023604.2 vs. TrEMBL
Match: tr|A0A061F5Z6|A0A061F5Z6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030842 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.1e-05
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 47  NSILPTNSLILGNSTIPPAQSGDISVLLQTSGVLLIAYLIANFIFPEFIMKSYRSDDESE 106
           N+ +P  +     + IPP+QSGD++V LQTS +LL+ YL+ANF+ P FI + +  D   E
Sbjct: 47  NAFVPLRNNSHSIAAIPPSQSGDVTVFLQTSALLLVVYLLANFVAPYFISRYFEFDKVGE 106

The following BLAST results are available for this feature:

BLAST of MELO3C023604.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45072.1	2.5e-46	87.61	hypothetical protein Csa_7G420170 [Cucumis sativus]	[more]
XP_022940449.1	2.4e-20	62.50	uncharacterized protein LOC111446047 [Cucurbita moschata]	[more]
XP_023525256.1	1.2e-19	60.71	uncharacterized protein LOC111788910 [Cucurbita pepo subsp. pepo]	[more]
XP_022981640.1	2.9e-18	61.61	uncharacterized protein LOC111480699 [Cucurbita maxima]	[more]
XP_002529916.2	6.1e-08	55.71	uncharacterized protein LOC8266243 [Ricinus communis]	[more]

BLAST of MELO3C023604.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50732.1	7.7e-05	39.53	unknown protein.	[more]

BLAST of MELO3C023604.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C023604.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9M2\|A0A0A0K9M2_CUCSA	1.7e-46	87.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420170 PE=4 SV=1	[more]
tr\|B9SV97\|B9SV97_RICCO	4.0e-08	55.71	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1303160 PE=4 SV=1	[more]
tr\|A0A067KSN4\|A0A067KSN4_JATCU	9.0e-08	42.73	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00909 PE=4 SV=1	[more]
tr\|A0A1R3KBC6\|A0A1R3KBC6_9ROSI	7.6e-07	47.30	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09684 PE=4 SV=1	[more]
tr\|A0A061F5Z6\|A0A061F5Z6_THECC	7.1e-05	43.33	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030842 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023604.2.1	MELO3C023604.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37196	FAMILY NOT NAMED	coord: 35..106

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023604.2	Csa7G420170	Cucumber (Chinese Long) v2	cumedB501
MELO3C023604.2	CSPI07G18700	Wild cucumber (PI 183967)	cpimedB512
MELO3C023604.2	Cucsa.128390	Cucumber (Gy14) v1	cgymedB202
MELO3C023604.2	CsGy7G017140	Cucumber (Gy14) v2	cgybmedB455
MELO3C023604.2	CsaV3_7G030520	Cucumber (Chinese Long) v3	cucmedB525

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023604.2	Silver-seed gourd	carmedB0116
MELO3C023604.2	Silver-seed gourd	carmedB0458
MELO3C023604.2	Silver-seed gourd	carmedB0768
MELO3C023604.2	Silver-seed gourd	carmedB0820
MELO3C023604.2	Cucumber (Chinese Long) v3	cucmedB177
MELO3C023604.2	Watermelon (97103) v2	medwmbB158
MELO3C023604.2	Watermelon (97103) v2	medwmbB212
MELO3C023604.2	Wax gourd	medwgoB198
MELO3C023604.2	Wax gourd	medwgoB254
MELO3C023604.2	Cucumber (Gy14) v2	cgybmedB157
MELO3C023604.2	Cucurbita maxima (Rimu)	cmamedB248
MELO3C023604.2	Cucurbita maxima (Rimu)	cmamedB379
MELO3C023604.2	Cucurbita maxima (Rimu)	cmamedB461
MELO3C023604.2	Cucurbita maxima (Rimu)	cmamedB922
MELO3C023604.2	Cucurbita moschata (Rifu)	cmomedB230
MELO3C023604.2	Cucurbita moschata (Rifu)	cmomedB365
MELO3C023604.2	Cucurbita moschata (Rifu)	cmomedB449
MELO3C023604.2	Cucurbita moschata (Rifu)	cmomedB911
MELO3C023604.2	Cucurbita pepo (Zucchini)	cpemedB150
MELO3C023604.2	Cucurbita pepo (Zucchini)	cpemedB347
MELO3C023604.2	Cucurbita pepo (Zucchini)	cpemedB592
MELO3C023604.2	Cucurbita pepo (Zucchini)	cpemedB665
MELO3C023604.2	Wild cucumber (PI 183967)	cpimedB174
MELO3C023604.2	Cucumber (Chinese Long) v2	cumedB175
MELO3C023604.2	Melon (DHL92) v3.6.1	medmedB084
MELO3C023604.2	Bottle gourd (USVL1VR-Ls)	lsimedB194
MELO3C023604.2	Bottle gourd (USVL1VR-Ls)	lsimedB261
MELO3C023604.2	Watermelon (Charleston Gray)	medwcgB173
MELO3C023604.2	Watermelon (Charleston Gray)	medwcgB182
MELO3C023604.2	Watermelon (97103) v1	medwmB198
MELO3C023604.2	Watermelon (97103) v1	medwmB212