Cucsa.106820 (gene) Cucumber (Gy14) v1

NameCucsa.106820
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRNase P Rpr2/Rpp21 subunit domain protein
Locationscaffold00930 : 310278 .. 312946 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTCCTTCATCCACCCTGGTTTCTTCCTTCTCCCTCACAGCCGGTGACAACCAACTACCGCCGCACCAACCCCACTCCCTTCTCGGTCGTCGGAGAACCCCTCTATCAATTTTCTTTCTCCTCAACCTGCCATTTGTCTATTTCCCTACTTTTCTCGTTTTCGCCCGTCTCCGATTCTCACTCTTTCTTCTTCGTGCCGTCCGCCTCGTCAAGGAATCACGTTTTGAATTCATAAGCACTTTCAACTGAATTTCTATTATTAACATGGCGAGGAAGAAGAGTAATACGAATAGAGGATCATCCAACCCCGGATTCGGTCCTCAAAATTCCATCACTCTAAGACAGGAAGCTACTGGGAAAATCAAACCCAAAGTATCTAACAATGCCAAAGTTTATTTGAATCATTTGGAAAATTTAGCGACTTGGGCTAGTGGGCAACCGTCTTTACCTTCATTGGCTGCTTTCTTTGGGCAACGTCTTGCTGCTGCAGCCGAGTCTTTGGCGGTTTCTCCTGACCCTTCTCTATTTCTCTGCGCGAGGTTCGTATGTATTCTGCTCTTTACATTTATTTAGCTTTGCATGCCTAGATTTGTTGTTTTTGTAGCGTTTATAACAGGGCAAGTTCATAAATATTGGTTGTATTTGAGGATGGGAGGTTTTTGTTGAGCTTTTTTGATTAGGTCTAAGTGAATGATTTATAGCAGTATTGAAATATTTAGGGGGGCACTGTTATACACCGTAATCTAATTAGTTCTAAGTTATTGCAATGGTGGAATTCAACAGTTGAACAATCGGTTGAAGAATTGAAAGTGTTCAATGCTATTTTGAGACTACTGAACAACACATCAATTGGTGCTGGAGATGAAAGAAGCTGGAATTTGTGTTGCTCTGGTAATCTCAGTCAGATCTTTGGCTCTGCCTGATTGATTTCAGGAGAGCTATTGAAGGAGAGATTTCAAAGATAGTGACTAGAGGAACATGCCTCTGAAGATAAAAACTTAGAGTGATTAGCATGTTTAAATGGTTATTTGTTTGTTTGTTTGTTGAGAACGTTATAATAAACATCTCCTATGGTGGCCTTGAATCTCTATGGGTGTTTTTTTTTGCTTGGAAGAGTATGAAGGAATTGACCACCATGTCTAGCATGTCTCATTTGGCGATCGATTTTGGAACTCATTAGTCATGATTATAAAGTTTTGGATACTTTGGCATTTTTAGTTCCGTTGAAGGCTTGCTATCCCTTCTGCTATGTGGTAATCTCTTGAGGAAAAAGCCAGTAAGCTATGGAGTATGGCCAATTCAATGAAATTTTTTATTTGGAGCGTGTGAGTTGGGAAGAAAAAGAAAGCCTTTAACAGCCAGGCTAAAAACTTGTGGGTGAAGTGCATGAGTTAGCCAAGCCTCATTGTTCTTTATTTCTCTAAATCGTGTGTTTAACCACTATATTTCCCTCGTTGTAATACTAATTAGGGTGCCTTTTGTTTTGTTATGTTTTTTTTTATGACAGTTTTCTTCTTTCTCCTTTGACTTCCAGGGAACTCATAATCAAATAATGTTTACATTTGCCTAAAAAAATGTTTACATCGGTCACATTACTTTTTTTTAAAAAATAGAAACATCACATTACTCATAGGACAAGGCTGAGCATTACAGTATAGGTTAAAGATCCGTTATTCTATTTTCTTGTTGTTAAATTTTTACAATTACTTTGAAAAGAAAATCCGCTGGTGTTTTTTATTCAATACATGGTTGGAGTGGACACCTGATTCGAACCATATAGCTGTTCCATGTTAAGGACTTTTATCATGTCACATTTGAATGTTGTCTTGGAATCTAATCTTTTTTGGCTATAAAACTAACCAATCTTACCCGTTATATTACATTCAGGTGTGAAACAATTCTCCAACCTGGTTCTAACTGCAACATACGAATAGAGAAGAATACTGCCAAGAAACGTCGAAGACACAAAAAAGGCAGTAATTTGACACAGAATGTTGTGGCGTATTATTGCCACTACTGCTCATGTAGGAACATAAAGAGAGGGACTCCCAAAGGCCATATGAAAGTGCTTTATGGCACAGAGTGTGTAAGCAAGGTAAAATCTGTGGTTGTCAAGGATGGTAAAGAATGTGAAAACAAGATTTTTACCATGGATACTCCTAAAATTCCTCCTCTTACAACTGTAGACTGTCTAACTATCGACACTCCTGCAATTCCTTCTTTGTCAACAACTAGAGACGATCTAACCATTGATACCAGTGCAATTTCTCCAACTGGGGACATTTCTGTTGTTGATGGCCCTGCTATTTCGTCTCCTAGAACAACTCCTGCAATTTCTTCCACCTTGAGCGTAACAAGTATATCAAGATCGCAAGTTAGGGACATTCCTACTTTAGATGCTCCTGCAACTCCTCTCACCTTGACTGGAATGACTCTGTTGGATTCGAAGAGGAGAAAGAGGAAGAAACCGTCATCCAAGAATCAAACTGAACCTGAGAGTTGTTCTGGTCCAACATCACATGGGGAAACAAGCGAAGGCACATCCAAAAGGAAGCGTAATAGAAAATCATGGACAAGTTTGAAGGAAATTGCTCAAAGGGAGGAAGAGAGAGGTAAACAAAACGTGGCTGGATTGGCAATTCCATTCTCCCTGTTAGAGACCTAATAA

mRNA sequence

TGCTCCTTCATCCACCCTGGTTTCTTCCTTCTCCCTCACAGCCGGTGACAACCAACTACCGCCGCACCAACCCCACTCCCTTCTCGGTCGTCGGAGAACCCCTCTATCAATTTTCTTTCTCCTCAACCTGCCATTTGTCTATTTCCCTACTTTTCTCGTTTTCGCCCGTCTCCGATTCTCACTCTTTCTTCTTCGTGCCGTCCGCCTCGTCAAGGAATCACGTTTTGAATTCATAAGCACTTTCAACTGAATTTCTATTATTAACATGGCGAGGAAGAAGAGTAATACGAATAGAGGATCATCCAACCCCGGATTCGGTCCTCAAAATTCCATCACTCTAAGACAGGAAGCTACTGGGAAAATCAAACCCAAAGTATCTAACAATGCCAAAGTTTATTTGAATCATTTGGAAAATTTAGCGACTTGGGCTAGTGGGCAACCGTCTTTACCTTCATTGGCTGCTTTCTTTGGGCAACGTCTTGCTGCTGCAGCCGAGTCTTTGGCGGTTTCTCCTGACCCTTCTCTATTTCTCTGCGCGAGGTGTGAAACAATTCTCCAACCTGGTTCTAACTGCAACATACGAATAGAGAAGAATACTGCCAAGAAACGTCGAAGACACAAAAAAGGCAGTAATTTGACACAGAATGTTGTGGCGTATTATTGCCACTACTGCTCATGTAGGAACATAAAGAGAGGGACTCCCAAAGGCCATATGAAAGTGCTTTATGGCACAGAGTGTGTAAGCAAGGTAAAATCTGTGGTTGTCAAGGATGGTAAAGAATGTGAAAACAAGATTTTTACCATGGATACTCCTAAAATTCCTCCTCTTACAACTGTAGACTGTCTAACTATCGACACTCCTGCAATTCCTTCTTTGTCAACAACTAGAGACGATCTAACCATTGATACCAGTGCAATTTCTCCAACTGGGGACATTTCTGTTGTTGATGGCCCTGCTATTTCGTCTCCTAGAACAACTCCTGCAATTTCTTCCACCTTGAGCGTAACAAGTATATCAAGATCGCAAGTTAGGGACATTCCTACTTTAGATGCTCCTGCAACTCCTCTCACCTTGACTGGAATGACTCTGTTGGATTCGAAGAGGAGAAAGAGGAAGAAACCGTCATCCAAGAATCAAACTGAACCTGAGAGTTGTTCTGGTCCAACATCACATGGGGAAACAAGCGAAGGCACATCCAAAAGGAAGCGTAATAGAAAATCATGGACAAGTTTGAAGGAAATTGCTCAAAGGGAGGAAGAGAGAGGTAAACAAAACGTGGCTGGATTGGCAATTCCATTCTCCCTGTTAGAGACCTAATAA

Coding sequence (CDS)

ATGGCGAGGAAGAAGAGTAATACGAATAGAGGATCATCCAACCCCGGATTCGGTCCTCAAAATTCCATCACTCTAAGACAGGAAGCTACTGGGAAAATCAAACCCAAAGTATCTAACAATGCCAAAGTTTATTTGAATCATTTGGAAAATTTAGCGACTTGGGCTAGTGGGCAACCGTCTTTACCTTCATTGGCTGCTTTCTTTGGGCAACGTCTTGCTGCTGCAGCCGAGTCTTTGGCGGTTTCTCCTGACCCTTCTCTATTTCTCTGCGCGAGGTGTGAAACAATTCTCCAACCTGGTTCTAACTGCAACATACGAATAGAGAAGAATACTGCCAAGAAACGTCGAAGACACAAAAAAGGCAGTAATTTGACACAGAATGTTGTGGCGTATTATTGCCACTACTGCTCATGTAGGAACATAAAGAGAGGGACTCCCAAAGGCCATATGAAAGTGCTTTATGGCACAGAGTGTGTAAGCAAGGTAAAATCTGTGGTTGTCAAGGATGGTAAAGAATGTGAAAACAAGATTTTTACCATGGATACTCCTAAAATTCCTCCTCTTACAACTGTAGACTGTCTAACTATCGACACTCCTGCAATTCCTTCTTTGTCAACAACTAGAGACGATCTAACCATTGATACCAGTGCAATTTCTCCAACTGGGGACATTTCTGTTGTTGATGGCCCTGCTATTTCGTCTCCTAGAACAACTCCTGCAATTTCTTCCACCTTGAGCGTAACAAGTATATCAAGATCGCAAGTTAGGGACATTCCTACTTTAGATGCTCCTGCAACTCCTCTCACCTTGACTGGAATGACTCTGTTGGATTCGAAGAGGAGAAAGAGGAAGAAACCGTCATCCAAGAATCAAACTGAACCTGAGAGTTGTTCTGGTCCAACATCACATGGGGAAACAAGCGAAGGCACATCCAAAAGGAAGCGTAATAGAAAATCATGGACAAGTTTGAAGGAAATTGCTCAAAGGGAGGAAGAGAGAGGTAAACAAAACGTGGCTGGATTGGCAATTCCATTCTCCCTGTTAGAGACCTAA

Protein sequence

MARKKSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSNNAKVYLNHLENLATWASGQPSLPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHKKGSNLTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIFTMDTPKIPPLTTVDCLTIDTPAIPSLSTTRDDLTIDTSAISPTGDISVVDGPAISSPRTTPAISSTLSVTSISRSQVRDIPTLDAPATPLTLTGMTLLDSKRRKRKKPSSKNQTEPESCSGPTSHGETSEGTSKRKRNRKSWTSLKEIAQREEERGKQNVAGLAIPFSLLET*
BLAST of Cucsa.106820 vs. TrEMBL
Match: A0A0A0KUP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G048010 PE=4 SV=1)

HSP 1 Score: 700.7 bits (1807), Expect = 9.2e-199
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 1

Query: 1   MARKKSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSNNAKVYLNHLENLATWASGQPS 60
           MARKKSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSNNAKVYLNHLENLATWASGQPS
Sbjct: 1   MARKKSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSNNAKVYLNHLENLATWASGQPS 60

Query: 61  LPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHKK 120
           LPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHKK
Sbjct: 61  LPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHKK 120

Query: 121 GSNLTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIFTM 180
           GSNLTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIFTM
Sbjct: 121 GSNLTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIFTM 180

Query: 181 DTPKIPPLTTVDCLTIDTPAIPSLSTTRDDLTIDTSAISPTGDISVVDGPAISSPRTTPA 240
           DTPKIPPLTTVDCLTIDTPAIPSLSTTRDDLTIDTSAISPTGDISVVDGPAISSPRTTPA
Sbjct: 181 DTPKIPPLTTVDCLTIDTPAIPSLSTTRDDLTIDTSAISPTGDISVVDGPAISSPRTTPA 240

Query: 241 ISSTLSVTSISRSQVRDIPTLDAPATPLTLTGMTLLDSKRRKRKKPSSKNQTEPESCSGP 300
           ISSTLSVTSISRSQVRDIPTLDAPATPLTLTGMTLLDSKRRKRKKPSSKNQTEPESCSGP
Sbjct: 241 ISSTLSVTSISRSQVRDIPTLDAPATPLTLTGMTLLDSKRRKRKKPSSKNQTEPESCSGP 300

Query: 301 TSHGETSEGTSKRKRNRKSWTSLKEIAQREEERGKQNVAGLAIPFSLLET 351
           TSHGETSEGTSKRKRNRKSWTSLKEIAQREEERGKQNVAGLAIPFSLLET
Sbjct: 301 TSHGETSEGTSKRKRNRKSWTSLKEIAQREEERGKQNVAGLAIPFSLLET 350

BLAST of Cucsa.106820 vs. TrEMBL
Match: M1AWZ4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012342 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.6e-49
Identity = 133/355 (37.46%), Postives = 192/355 (54.08%), Query Frame = 1

Query: 1   MARKKSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSNNAKVYLN--HLENLATWASGQ 60
           M +K S  N     PG     SITLR+E+ G  K +   NAK+ L   H++++A WASG+
Sbjct: 1   MGKKSSRKNGVGKAPG-----SITLREES-GVKKKQTHVNAKLMLKLEHIKDIAAWASGE 60

Query: 61  PSLPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRH 120
            S+PSL AFFGQRLA + ESL + PDPSLF C RCE+ILQ G NC  RIEKN  K R++ 
Sbjct: 61  GSIPSLGAFFGQRLAVSTESLGLPPDPSLFTCQRCESILQAGYNCTSRIEKNKRKARKKR 120

Query: 121 KKGSNLTQNVVAYYCHYCSCRNIKRGTPKGHMKVLY----GTECVSKVKSVVVKDGKECE 180
           K      +N + Y CH+CS +N+KRGTP+G+MK LY     T  V   KS + K   +  
Sbjct: 121 KTSGIPPKNCIVYECHFCSHQNLKRGTPRGYMKDLYPVKPKTSRVDPTKSAIRKTKVDPT 180

Query: 181 NKIFTMDTPKIPPLTTVDCLTIDTPAIPSLSTTRDDLTIDTSAIS-PTGDISVVDGPAIS 240
                        + ++D   +D    P+ S  +    +DTS  S     +  ++     
Sbjct: 181 ESAIQKSEQLDMLVASIDKARVD----PTESAMQKSEHLDTSVASIDKTRVDTIESATQK 240

Query: 241 SPRTTPAISSTLSVTSISRSQVRDIPTLDAPATPL-TLTGMTLLDSKRRKRKKPSSKNQT 300
           S +      +T+ V  I  S++     +   ATPL T+T  +LLDSK+RKR +  SK + 
Sbjct: 241 SEQFDALGGNTIDV--IVSSELVGDDLMAGLATPLSTITVTSLLDSKKRKRNRTGSKKKV 300

Query: 301 EPESCSGPTSHGETSEGTSKRKRNRKSWTSLKEIAQREEERGKQNVAGLAIPFSL 348
           EP   S   +  E +  TS ++  +KSWTSLKEIA+ +    ++  + +++PF L
Sbjct: 301 EPRDGSSSMTDAEKTVSTSSKR--KKSWTSLKEIAESQSSNSRK-FSNISVPFIL 340

BLAST of Cucsa.106820 vs. TrEMBL
Match: K4CPA2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.9e-48
Identity = 137/378 (36.24%), Postives = 198/378 (52.38%), Query Frame = 1

Query: 1   MARKKSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSN-NAKVYLNHLENLATWASGQP 60
           M +K S  N      G     SITLR+E+  K K  + N  + + L H++++A W SG+ 
Sbjct: 1   MGKKPSRKNGVGKASG-----SITLREESGVKKKQTLVNAKSMLKLEHIKDIANWTSGEG 60

Query: 61  SLPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHK 120
           S+PSLAAFFGQRLA +AESL VSPDPSL  C RCE+ILQ G N   RIEKN  K R++ K
Sbjct: 61  SIPSLAAFFGQRLAVSAESLGVSPDPSLLTCQRCESILQAGYNSTARIEKNKRKARKKRK 120

Query: 121 KGSNLTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIFT 180
                ++N V Y CH+CS RN+KRG  +G+M  LY     +K K++ V        K+  
Sbjct: 121 TSGIPSKNSVVYECHFCSHRNLKRGNSRGYMNSLY----PAKPKTLTVDPATSATRKVKV 180

Query: 181 MDT----PKIPPLTTVDCLTIDTPAIPSLSTTRDD-------LTIDTSAISPTGD----- 240
             T     +   L T+      T   P+ S TR+         +ID + + PTG      
Sbjct: 181 DPTESTMQRSEHLGTLVASIDKTKVDPTESATRESEQLDTLVASIDKAGVDPTGSAMQKS 240

Query: 241 ------ISVVDGPAISSPRTT-------PAISSTLSVTSISRSQVRDIPTLDAPATPLTL 300
                 ++ +D   + +  +         A   + +  ++S   V D P +  PATPL+ 
Sbjct: 241 EHLDTLVASIDKTRVDTTESATQKSEQFDAFGGSTTDATVSSELVGDDP-MAGPATPLST 300

Query: 301 TGMT-LLDSKRRKRKKPSSKNQTEPESCSGPTSHGETSEGTSKRKRNRKSWTSLKEIAQR 348
             +T LLDSK+RKR +  SK + E +  S  T   +T   +SKRK  +KSWTSLKEIA+ 
Sbjct: 301 VSVTSLLDSKKRKRNRTGSKKKGETQDGSSMTDVEKTVSTSSKRK--KKSWTSLKEIAE- 360

BLAST of Cucsa.106820 vs. TrEMBL
Match: M1A5Y5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG403005999 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.7e-48
Identity = 145/380 (38.16%), Postives = 196/380 (51.58%), Query Frame = 1

Query: 1   MARKKSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSNNAK--VYLNHLENLATWASGQ 60
           M +K S  N      G     SITLR+E+ G  K +   NAK  + L H++++ATWASG+
Sbjct: 1   MGKKSSRKNGVGKALG-----SITLREES-GVKKKQTHVNAKSMLKLEHIKDIATWASGE 60

Query: 61  PSLPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRH 120
            S+PSL AFFGQRLA AAESL V PDPSLF C RCE+ILQ G NC  RIEKN  K R++ 
Sbjct: 61  GSIPSLGAFFGQRLAVAAESLGVPPDPSLFTCQRCESILQAGYNCTTRIEKNKRKARKKL 120

Query: 121 KKGSNLTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENK-- 180
           K      +N V Y CH+CS RN+KRGTP+G+MK L      +K K++ V   K    K  
Sbjct: 121 KTSGIPPKNSVVYECHFCSHRNLKRGTPRGYMKSLNP----AKPKTLTVDPAKSATRKAK 180

Query: 181 -----------------IFTMDTPKIPP----------LTTVDCLTIDTPAIPSLSTTRD 240
                            + ++D  K+ P          L T    T      P+ S  + 
Sbjct: 181 VDPTESAMQRSEHLGTLVASIDKAKVDPTESIMHKSEHLDTSVASTDKASVDPTKSAKQK 240

Query: 241 DLTIDTSAIS-PTGDISVVDGPAISSPRTTPAISSTLSVTSISRSQVRDIPTLDAPATPL 300
              +DTS  S     +   +     S +      ST  V  I  S++     +  PATPL
Sbjct: 241 SEHLDTSVASIDKARVDTTESATQKSEQFDALGGSTTDV--IVSSELVGEDAMAGPATPL 300

Query: 301 -TLTGMTLLDSKRRKRKKPSSKNQTEPESCSGPTSHGETSEGTSKRKRNRKSWTSLKEIA 348
            T+T  +LLDSK+RKR +  SK + EP+  S  T   +T   +SKRK+   SWTSLKEIA
Sbjct: 301 STVTVTSLLDSKKRKRNRTGSKKK-EPQDGSSMTDAEKTVSTSSKRKKT--SWTSLKEIA 360

BLAST of Cucsa.106820 vs. TrEMBL
Match: A0A0K9RR07_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_038900 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47
Identity = 133/349 (38.11%), Postives = 178/349 (51.00%), Query Frame = 1

Query: 1   MARKKSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSNNAKVYLNH--LENLATWASGQ 60
           M ++        + P  G   ++++R+EA+GK   K S++ K  L H   +NLA WA+G 
Sbjct: 1   MGKRGGKGKENGAPPSSGFHTALSMREEASGK---KQSHSTKSILKHKQFQNLAQWAAGN 60

Query: 61  PSLPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRH 120
            S+  L AFFG+R A   ESL + PDPSLF C RCETILQPG NC IRIEKN AK  RR 
Sbjct: 61  -SIGCLGAFFGRRFAEFGESLGIPPDPSLFPCQRCETILQPGLNCTIRIEKNRAKNHRRS 120

Query: 121 KKGSNLTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIF 180
           K  +  TQN V Y C +C  RN+KRGTPKG+M+ L      SK KS   K  K+      
Sbjct: 121 KTKTP-TQNNVVYTCQFCLHRNLKRGTPKGYMREL----TPSKPKSSNPKPVKKSNFSNV 180

Query: 181 TMDTPKIPPLTTVDCLTIDTPAIPSLSTTRDDLTIDTSAISPTGDISVVDGPAISSPRTT 240
             D P                      +  ++ T+ T   +     +V    A  +P  +
Sbjct: 181 KTDKP----------------------SEENNSTVKTEKENEKNFSNVETDKANEAPSPS 240

Query: 241 PAISSTLSVTSISRSQVRDIPTLDAPATPLTLTGMTLLDSKRRKRKKPSSKNQTEPESCS 300
           PAI++  S  +            D P + L  +G+ LLDSKRRKRKKP  K  TE    S
Sbjct: 241 PAITNICSSVT------------DNPTSSLAESGVKLLDSKRRKRKKPGLKASTEENQVS 300

Query: 301 GPTSHGETSEGTSKRKRNRKSWTSLKEIAQREEERGKQNVAGLAIPFSL 348
              +  E   G SKR+  +KSWT+LK+IA+ E+    Q     +IPF+L
Sbjct: 301 SAPAVIEKDSGASKRR--KKSWTTLKDIAESEKHDRNQRFTNFSIPFNL 304

BLAST of Cucsa.106820 vs. TAIR10
Match: AT5G41270.1 (AT5G41270.1 RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175))

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-29
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 1

Query: 47  HLENLATWAS-GQPSLPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNI 106
           HL+NLA W+S G   +PSLA+  G+RLAA  ES  ++ DP L  C RCETIL+PG NCN+
Sbjct: 28  HLKNLALWSSTGDTPIPSLASLLGRRLAADTESTGITTDPDLVSCQRCETILKPGFNCNV 87

Query: 107 RIEK---NTAKKRRRHKKGSNL--TQNVVAYYCHYCSCRNIKRGTPKGHMKVLY 155
           RIEK   N  KKR R KK +N+   QN V Y+C++CS RN+KRGT KG MK LY
Sbjct: 88  RIEKVSANVKKKRNRCKKSNNICFPQNNVVYHCNFCSHRNLKRGTAKGQMKELY 141


HSP 2 Score: 44.7 bits (104), Expect = 1.4e-04
Identity = 43/122 (35.25%), Postives = 58/122 (47.54%), Query Frame = 1

Query: 230 PAISSPRTTPAISSTLSVTSISRS---QVRDIPTLDAPATPLTLTGMTLLDSKRRKRKKP 289
           P I    T P    +  ++S  RS   QV +    D P  P+ LT    L+  RR RK P
Sbjct: 153 PKIKKEMTMPQEIQSNMLSSPERSVKDQVEEKSVGDTPK-PMMLT----LERDRRIRK-P 212

Query: 290 SSKNQTEPESCSGPTSHGETSEGTSKRKRNRKSWTSLKEIAQREEERGKQNVAG-LAIPF 348
            SK  +EP+S        E + G S +++ +  WTS+KEIA    E  K + AG   IPF
Sbjct: 213 KSKKPSEPQSVP------EKTVGGSNKRKRKSPWTSMKEIA----ETNKSSKAGNFKIPF 258

BLAST of Cucsa.106820 vs. NCBI nr
Match: gi|449457658|ref|XP_004146565.1| (PREDICTED: uncharacterized protein LOC101220608 [Cucumis sativus])

HSP 1 Score: 700.7 bits (1807), Expect = 1.3e-198
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 1

Query: 1   MARKKSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSNNAKVYLNHLENLATWASGQPS 60
           MARKKSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSNNAKVYLNHLENLATWASGQPS
Sbjct: 1   MARKKSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSNNAKVYLNHLENLATWASGQPS 60

Query: 61  LPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHKK 120
           LPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHKK
Sbjct: 61  LPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHKK 120

Query: 121 GSNLTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIFTM 180
           GSNLTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIFTM
Sbjct: 121 GSNLTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIFTM 180

Query: 181 DTPKIPPLTTVDCLTIDTPAIPSLSTTRDDLTIDTSAISPTGDISVVDGPAISSPRTTPA 240
           DTPKIPPLTTVDCLTIDTPAIPSLSTTRDDLTIDTSAISPTGDISVVDGPAISSPRTTPA
Sbjct: 181 DTPKIPPLTTVDCLTIDTPAIPSLSTTRDDLTIDTSAISPTGDISVVDGPAISSPRTTPA 240

Query: 241 ISSTLSVTSISRSQVRDIPTLDAPATPLTLTGMTLLDSKRRKRKKPSSKNQTEPESCSGP 300
           ISSTLSVTSISRSQVRDIPTLDAPATPLTLTGMTLLDSKRRKRKKPSSKNQTEPESCSGP
Sbjct: 241 ISSTLSVTSISRSQVRDIPTLDAPATPLTLTGMTLLDSKRRKRKKPSSKNQTEPESCSGP 300

Query: 301 TSHGETSEGTSKRKRNRKSWTSLKEIAQREEERGKQNVAGLAIPFSLLET 351
           TSHGETSEGTSKRKRNRKSWTSLKEIAQREEERGKQNVAGLAIPFSLLET
Sbjct: 301 TSHGETSEGTSKRKRNRKSWTSLKEIAQREEERGKQNVAGLAIPFSLLET 350

BLAST of Cucsa.106820 vs. NCBI nr
Match: gi|659102242|ref|XP_008452026.1| (PREDICTED: uncharacterized protein LOC103493157 [Cucumis melo])

HSP 1 Score: 634.8 bits (1636), Expect = 8.9e-179
Identity = 315/347 (90.78%), Postives = 326/347 (93.95%), Query Frame = 1

Query: 1   MARKKSNTNRGSSNPGFGPQNSITLRQEATGKIKPKVSNNAKVYLNHLENLATWASGQPS 60
           MARKK NT RGSSNP  GPQNSITLRQEATGKIKPKVSNNAKVYLNHLENLATWASGQPS
Sbjct: 1   MARKKGNTKRGSSNPTSGPQNSITLRQEATGKIKPKVSNNAKVYLNHLENLATWASGQPS 60

Query: 61  LPSLAAFFGQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHKK 120
           LPSLAAFFGQRLAAAAESLAV+PDPSLFLCARCET+LQPGSNC IRIEKN AKKRRRHKK
Sbjct: 61  LPSLAAFFGQRLAAAAESLAVAPDPSLFLCARCETVLQPGSNCYIRIEKNNAKKRRRHKK 120

Query: 121 GSNLTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIFTM 180
            SN+TQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKI T+
Sbjct: 121 ASNVTQNVVAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKILTV 180

Query: 181 DTPKIPPLTTVDCLTIDTPAIPSLSTTRDDLTIDTSAISPTGDISVVDGPAISSPRTTPA 240
           D P  PPLTTVDCLTIDTPAIPSLSTTRDD+ +DT+A+ PT DISV DGPAISSPRTTPA
Sbjct: 181 DAPTTPPLTTVDCLTIDTPAIPSLSTTRDDVAVDTTAVPPTEDISVDDGPAISSPRTTPA 240

Query: 241 ISSTLSVTSISRSQVRDIPTLDAPATPLTLTGMTLLDSKRRKRKKPSSKNQTEPESCSGP 300
           I ST SVTS+SRSQVRDIPTLDAPATPLTLT MTLLDSKRRKRKKPSSKN+TEPESCS P
Sbjct: 241 IPSTSSVTSMSRSQVRDIPTLDAPATPLTLTAMTLLDSKRRKRKKPSSKNRTEPESCSAP 300

Query: 301 TSHGETSEGTSKRKRNRKSWTSLKEIAQREEERGKQNVAGLAIPFSL 348
           TSHGE SE TSKRKRNRKSWTSLKEIAQREEE+GKQNVAGLAIPFSL
Sbjct: 301 TSHGEKSEDTSKRKRNRKSWTSLKEIAQREEEKGKQNVAGLAIPFSL 347

BLAST of Cucsa.106820 vs. NCBI nr
Match: gi|645266916|ref|XP_008238833.1| (PREDICTED: uncharacterized protein LOC103337456 [Prunus mume])

HSP 1 Score: 240.7 bits (613), Expect = 3.8e-60
Identity = 146/370 (39.46%), Postives = 203/370 (54.86%), Query Frame = 1

Query: 12  SSNPGFGPQNSITLRQEATGKIK---PKVSNNAKVYLNHLENLATWASGQPSLPSLAAFF 71
           + N  +G  N+I+LR+E TGK +   P V+  + + L HL+ LA WA G+ S+PSL AFF
Sbjct: 10  TGNTAYGSNNTISLREELTGKKQTKGPAVNAKSALKLEHLQRLAVWAGGETSVPSLGAFF 69

Query: 72  GQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHKKGSNLTQNV 131
              LA+A E+L V PDPSLF C RCETILQPG NC +RIEKN +KKRR+ KK ++ +QN 
Sbjct: 70  AHTLASAQEALGVPPDPSLFTCQRCETILQPGLNCTVRIEKNRSKKRRKSKKPTSFSQNN 129

Query: 132 VAYYCHYCSCRNIKRGTPKGHMKVLYGTEC----------------VSKVKSVVVKDGKE 191
           V Y CH+CS RN+KRGTP GHMKV+  T+                 VS  KS+V +D   
Sbjct: 130 VVYTCHFCSHRNLKRGTPHGHMKVICPTKTKTTLKLKPAKSISQKFVSSKKSIVAEDEVR 189

Query: 192 CENKIFTMDTPKIPPLTTVDCL-TIDTPAIPSLSTTRD--------DLTIDTSAISPTGD 251
             N+I   +  K+  + + +    I    I S    R+        ++  +T++     +
Sbjct: 190 KANEIAASEIIKVNEIASSEITREIQANEIASSEIVREIQGNETASEIENETASSEIARE 249

Query: 252 ISVVDGPAISSPRTTPAISSTLS------VTSISRSQV-RDIPTLDAPATPLTLTGMT-L 311
           I   +  ++   R    + +         V  ++ S +  +IPT+D+P TP   TG T L
Sbjct: 250 IQEKETASLEIARENRIMETRADEDEVTIVNEMASSAIGGEIPTVDSPETPKVRTGPTLL 309

Query: 312 LDSKRRKRKKPSSKNQTEPESCSGPTSHGETSEGTSKRKRNRKSWTSLKEIAQREEERGK 346
           L  KRRKR K  SK   EPE+   PT    T  G+   KR RK WTSLKEIA+  E +  
Sbjct: 310 LGGKRRKRNKSVSKKPAEPENSPNPTDAENT--GSMSNKRRRKKWTSLKEIAESSEHKNI 369

BLAST of Cucsa.106820 vs. NCBI nr
Match: gi|694400582|ref|XP_009375376.1| (PREDICTED: uncharacterized protein LOC103964201 [Pyrus x bretschneideri])

HSP 1 Score: 223.4 bits (568), Expect = 6.2e-55
Identity = 138/332 (41.57%), Postives = 185/332 (55.72%), Query Frame = 1

Query: 14  NPGFGPQNSITLRQEATGKIKPK----VSNNAKVYLNHLENLATWASGQPSLPSLAAFFG 73
           N  F   N+I+LR+E TGK + K    ++  A + L HL+ LA W   + S+PSL AFFG
Sbjct: 15  NTAFTSTNNISLREELTGKKQTKGGSSINAKAVLKLEHLQRLAVWTGTEASVPSLGAFFG 74

Query: 74  QRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHKKGSNLTQNVV 133
           + LAAA E++AV P+PSLF C RCET+LQPG NC ++IEKN AK RRR KK  N +QN V
Sbjct: 75  RTLAAAQEAIAVPPEPSLFPCQRCETVLQPGFNCTVQIEKNRAKARRRSKKLINFSQNNV 134

Query: 134 AYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIFTMDTPKIPPLT 193
            Y CH+CS +N+KRGTP GHMK    T C  K K+    +     +K F           
Sbjct: 135 VYTCHFCSHQNLKRGTPNGHMK----TICPPKAKTTSKLNLARSISKKF----------- 194

Query: 194 TVDCLTIDTPAIPSLSTTRDDLTIDTSAISP-TGDISVVDGPAISSPRTTPAISSTLSVT 253
                      + S  TT  D       I+P TG+    + P + +P     +S      
Sbjct: 195 -----------VNSKKTTAGDEVSKADEIAPSTGE----EIPTVDTPAGEDEVS---KAN 254

Query: 254 SISRSQVRDIPTLDAPATPLTLTGMT-LLDSKRRKRKKPSSKNQTEPESCSGPTSHGETS 313
            ++ S   +IP++D PATP   TG+T LL  K+R+R K ++K   EPE  S PTS  E +
Sbjct: 255 EVAPSAGTEIPSVDTPATPAMKTGITLLLGGKKRRRNKSAAKKPAEPE--SSPTSIAENT 310

Query: 314 EGTSKRKRNRKSWTSLKEIAQREEERGKQNVA 340
             TS  KR RKSWTSLKEIA+R +    + ++
Sbjct: 315 TSTS-NKRRRKSWTSLKEIAKRSDHSNMRKIS 310

BLAST of Cucsa.106820 vs. NCBI nr
Match: gi|697095628|ref|XP_009612264.1| (PREDICTED: uncharacterized protein LOC104105616 [Nicotiana tomentosiformis])

HSP 1 Score: 221.9 bits (564), Expect = 1.8e-54
Identity = 145/343 (42.27%), Postives = 196/343 (57.14%), Query Frame = 1

Query: 10  RGSSNPGFGPQNSITLRQEATGKIKPK-VSNNAKVYLNHLENLATWASGQPSLPSLAAFF 69
           R     G     SITLR E +GK K   V+  + + L H++NLATWASG+ S+ SL AFF
Sbjct: 5   RAKKKGGGTTSGSITLRDELSGKKKQSHVNAKSMLKLEHIKNLATWASGEASIHSLGAFF 64

Query: 70  GQRLAAAAESLAVSPDPSLFLCARCETILQPGSNCNIRIEKNTAKKRRRHKKGSNLTQNV 129
           GQRLAA+AESL V PDPSLF C RCE+ILQ G NC +RIEK   K R R KK     +N 
Sbjct: 65  GQRLAASAESLGVPPDPSLFTCQRCESILQVGYNCTVRIEKKKRKARNRRKKPGIPPKNS 124

Query: 130 VAYYCHYCSCRNIKRGTPKGHMKVLYGTECVSKVKSVVVKDGKECENKIFTMDTPKIPPL 189
           V Y CH+CS RN+KRGTP+G+MK LY     +K+ +  V   K    K   +DT     +
Sbjct: 125 VVYECHFCSHRNLKRGTPRGYMKELY----PAKITTSRVDPTKSATRKSEQLDT----VV 184

Query: 190 TTVDCLTIDTPAIPSLSTTRDDLTIDT-SAISPTGDISVVDGPAISSPRTTPAISSTL-- 249
           +++D   +D     + S T+    +DT  A      + + +     S +   ++ ST   
Sbjct: 185 SSIDKARVDR----TESATQKSEQLDTLEANIDETRVDLTESATQKSEQFDTSVDSTNRD 244

Query: 250 SVTSISRSQVRDIPTLDAPATPL-TLTGMTLLDSKRRKRKKPSSKNQTEPESCSGPTSHG 309
           +   +S   V D PT   PATPL T+T  +LLDSKR+KR +  SK + EP+  S  T   
Sbjct: 245 NNADVSSEIVGDDPT-TGPATPLSTVTVTSLLDSKRKKRNRTVSKKKVEPQDGSSATDAE 304

Query: 310 ETSEGTSKRKRNRKSWTSLKEIAQREEERGKQNVAGLAIPFSL 348
           +T   +SKRK  RKSWTSLKEIA+ E    ++  + +++PF L
Sbjct: 305 KTVSTSSKRK--RKSWTSLKEIAESEGSNSRK-FSNISVPFVL 331

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KUP1_CUCSA9.2e-199100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G048010 PE=4 SV=1[more]
M1AWZ4_SOLTU4.6e-4937.46Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012342 PE=4 SV=1[more]
K4CPA2_SOLLC3.9e-4836.24Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
M1A5Y5_SOLTU6.7e-4838.16Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG403005999 PE=4 SV=1[more]
A0A0K9RR07_SPIOL2.5e-4738.11Uncharacterized protein OS=Spinacia oleracea GN=SOVF_038900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G41270.12.1e-2957.02 RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175)[more]
Match NameE-valueIdentityDescription
gi|449457658|ref|XP_004146565.1|1.3e-198100.00PREDICTED: uncharacterized protein LOC101220608 [Cucumis sativus][more]
gi|659102242|ref|XP_008452026.1|8.9e-17990.78PREDICTED: uncharacterized protein LOC103493157 [Cucumis melo][more]
gi|645266916|ref|XP_008238833.1|3.8e-6039.46PREDICTED: uncharacterized protein LOC103337456 [Prunus mume][more]
gi|694400582|ref|XP_009375376.1|6.2e-5541.57PREDICTED: uncharacterized protein LOC103964201 [Pyrus x bretschneideri][more]
gi|697095628|ref|XP_009612264.1|1.8e-5442.27PREDICTED: uncharacterized protein LOC104105616 [Nicotiana tomentosiformis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007175Rpr2
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.106820.1Cucsa.106820.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007175RNAse P, Rpr2/Rpp21 subunitPFAMPF04032Rpr2coord: 45..136
score: 1.8
NoneNo IPR availablePANTHERPTHR36072FAMILY NOT NAMEDcoord: 7..348
score: 1.1

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.106820Cucumber (Chinese Long) v3cgycucB133
Cucsa.106820Cucumber (Chinese Long) v3cgycucB135
Cucsa.106820Cucumber (Chinese Long) v3cgycucB136
Cucsa.106820Watermelon (97103) v2cgywmbB143
Cucsa.106820Watermelon (97103) v2cgywmbB144
Cucsa.106820Cucumber (Gy14) v1cgycgyB055
Cucsa.106820Cucumber (Gy14) v1cgycgyB056
Cucsa.106820Cucurbita maxima (Rimu)cgycmaB0246
Cucsa.106820Cucurbita maxima (Rimu)cgycmaB0244
Cucsa.106820Cucurbita moschata (Rifu)cgycmoB0243
Cucsa.106820Cucurbita moschata (Rifu)cgycmoB0245
Cucsa.106820Wild cucumber (PI 183967)cgycpiB129
Cucsa.106820Wild cucumber (PI 183967)cgycpiB131
Cucsa.106820Wild cucumber (PI 183967)cgycpiB132
Cucsa.106820Cucumber (Chinese Long) v2cgycuB128
Cucsa.106820Cucumber (Chinese Long) v2cgycuB130
Cucsa.106820Cucumber (Chinese Long) v2cgycuB131
Cucsa.106820Melon (DHL92) v3.5.1cgymeB137
Cucsa.106820Melon (DHL92) v3.5.1cgymeB138
Cucsa.106820Melon (DHL92) v3.5.1cgymeB139
Cucsa.106820Watermelon (Charleston Gray)cgywcgB147
Cucsa.106820Watermelon (Charleston Gray)cgywcgB148
Cucsa.106820Watermelon (Charleston Gray)cgywcgB149
Cucsa.106820Watermelon (97103) v1cgywmB149
Cucsa.106820Watermelon (97103) v1cgywmB150
Cucsa.106820Watermelon (97103) v1cgywmB151
Cucsa.106820Cucurbita pepo (Zucchini)cgycpeB0239
Cucsa.106820Bottle gourd (USVL1VR-Ls)cgylsiB138
Cucsa.106820Bottle gourd (USVL1VR-Ls)cgylsiB139
Cucsa.106820Melon (DHL92) v3.6.1cgymedB137
Cucsa.106820Melon (DHL92) v3.6.1cgymedB138
Cucsa.106820Melon (DHL92) v3.6.1cgymedB139
Cucsa.106820Silver-seed gourdcarcgyB1059