Cucsa.100900 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.100900
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	NADH dehydrogenase-like complex O
Location	scaffold00927 : 170514 .. 175178 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTCTCTGCATCTTTTTCTCACAACTCaTTCTCATGCCTAACTCAATTCCCACAAAATTTTAGAAGAAAtCCACTTCGCTTTCATCTTATTCGAGCTGTGAAATCCACTGAACCGGAGAAGAAGGTGTCAGAGACCAAAACCCAGGAGCTTCCCGTGGCTGAACCTTCAAGTTCAAGCTCCCCCACTGCCTCTCCCAAGGTTTCAAAGAAGCCTGTCTATTCGAGTGAGTTTCTTCTTCTATTCTGCTTCCAGTCTATTGGGAATTTGAGGATTCAATTTAGATTTGTTAATTTCGTCTTTTATTTGCTTTTTGTGTAGTGAAGAAGGGTCAGATTGTGAGAGTTGACAAAGAGAAGTATCTTAATAGTGTTAATGTAAGTAGTTTTCTGGACTCTTTTTTGTGGCAATGAGTTACCTCTTTACAAGTTTATAAAATTAATTTAGTGCAACGTTACTCAAGCAAGGTCTGCGTGACTTGCTTCATTGCTTGTTGTTTGTGTTTTTATAATCCTTATGTTTCCAATTCAGCTATATACTACCCGTGTCTTTCTATGGCATAGCCAAATCCAACAAGAGAAGTTGAAGACATACTTTTGCAATGGTTTCTTGGCAGGAGGGTAGAGTGAAAGAAACAAGGAAACAAAGGAACAACTCCAAGTGTTGAACTTTAACCATtAATGAACGATGCAAGAAAATcTGAAGTTGTTTCTAGTTTGGAATCTTATTCACTCAGAGGAAATATGTAGGGCGTGGACTATTAAATTCTTCCTGACGGGCTCAGTGAGCTGTGTTTGATTTATGATTCTCCTTTTGACCCGTCTACTTTTCCTCTTTGAAGCATGGCTGGAAAaGTGTGGCTGCAATAGGTTAATATAGAATGGTGGCCAACAGTCTAGATTATACGCGAGTGTGAACAATTAAAGTGCAGCTCAACTCTGTCCAACGGAATTTCTAGAACAATTGTAGGCCTGTGCGGATTCTATCTATTTCTGCAGGATTTGGGTAGGCCTCCAATTGTAGAAGTATTCAGTAGAAAGGATAAAAAaGGGAATGCCACTCTTAAGAGTTAGGTTGCTAGGATGTGTGTACACTTTTTTAGTAAGGAATAGGATTGCGTTTGTTTGAATCTCTCCAATTGACCTAGAACAAGAATTCAACCATTCAAACTTAGTTTCTAAAGCAATAAATCTTAAAAACACGGAgCTCTTgTTCTTTCCTTGAACGAGAGTTATATGGGTCCCACTGGAGCGTTTCTCTTTCCAATGACTTCAAGTTACATAAATGACTCAGATTGTGGTTTAAATCCcCAAAATCCTTAAATAAGGACAATAAAATTTTATAGGTAACTCCTATCATCGTAGGTAAAGTTGGACTAACTTAAACATTTGAATTTTGTTTGAAGAGCTGGAATGTGATCTAATTACTGGAAATATCAGGGGTGTTGGCATGCACGAGGAATCGAAGACGGAACAAAAATAAGTTGTGAAGCATGcAAACAATGGGAAAAAGGGTTGGTTGAAAATTGTGGAACGAACTAAACTTGATATTATAAATCGAGCCCGAAATGCTCAACCCAAATGTGGATTTTTGGATTACATTACAATCCATATTCATGCACTATTGTTCTTCAAATAGCCCCTTGATGAAAAGTCAATAGTTAGTTCTTCATACAAAATGAGTTAGTTTCTCTTCCAATTTCCCCTGCCCTGCACCTGAATCGTCTTGAAAGAGGGTGACACATGTGGTGTCATACACTTTTGCATTAGTCTTGTGATGACCTGACCTTTTTGCTCATTTATTTTGTGATGACCTGACCTTTTTGCTCATTTATTTTGTGATGATTGGGGCCATGGGGAAATCGTCCTTGATGTATGGGAAGACAGTGAGATAGAGTCAAGTCATCATGCCTCTCAATGAGTTGAAGTAGACTTGGATTGGGGCATCTTTTTATGGAATGATGTATGAGAAGAAGAAAGCTAACGTTTTATTTCATCTTTCTCTATCTTGGTAGACCATTAAATAAAGAATGAGAAATTTTTATGAACTCTATTTAATAACTTCATTCATCACCATCAAATTTTAGATCACAAACGAAATGTTAGTTTGAAGGAACAGAATTTGAACTGTGCTCATTCTACCATTGCTCAAGACATATTTTTCCTTGTGTTATTGGACTGATGGTAAACATTGTTTTCTTTTCTTTATCAATAGTATCTATCTGTTGGACATCCACCTTATTTCAAGGGCTTGGATTACATTTATGAAGACCGTGGTGAGGTCAGTTCATATAGATTACACTCAGGCCTACTATAATTTATCAGGGACTTTTGATGAGTAATCCTTTTCGTCTCAATCATCTTTCTTCAGGTATTGGATCTTCGCATTTTCGAGACAGGAGAATATGCACTTGTGAGTAACTTTCATTTGGACCCCATGTATATATGATTGTTTGGCTTTTCTTTTTCTTTTCTATAATATCTGTTGGGCATGCACCTTTTCACAAGTTTCTTTACTTCTATACTTTATCAAAATAGTGAGAGAGAGGAAAATTAGAACAAGCAAAATGGATATTTCCCTTTAATGCAAATGGATTGTCATTTTTACTCAAAATTCTTGGACAGATTGCATGGGTTGGCATTCCGACTGCTCCAGCTTGGCTGCCGACAGAAATGCTTATAAAGGTATTTATTTAAAATTGTTCTTAATATCTTTCACATCCTGAGCACTAGAGTTTCGATTAAGCGAGACCATACATTTAAGCATGAGAATCTTGGATAGTTGGAGAAAGCTTAGCAATTTATGTTAAGTTCTTACATAAAAGTTACCCTTCATCAGTTCATTACAACTAAGAAAAGTAGCAATCCTTGAACGAATTTCCTAGAGTAGCATCAATGATGCAGAAATAGCATTGAAGATACAGAAAGTAGATATTGGAATGTTTATCGTTGACTACTCTAGTTTCTTTTTTCTTCCTTCATTGGGTGATTTTAGAAGACATGCTCTCTCCTTGCTAACTCAAACTTTGCTCCTACTCTAGGAAATATTGGGTAACCCTTACTGAACATCTATTATGTGAGTGCTTTTGAAATTGTTAAAATCATTTTTCTCAAGTTTAGAATCACTCTAAAATGCATCCTTAATCATGGAAGATCAATTCAATGTTTAATTTTACACTTTTAAACGCACGTTTGATACTTTCAAAAATGATTTTGAATGATCAAAAGCATTTTTTAAGTTATTACGAAAATGACAAATATGATTATAAGCTTATAACCAATAACCATTTTAGAATCCCTCTCAAACATGATATAATTCTTAGGAAAACATCAAAGTCACTCcTTACGATACAATCATAGTCCCCCACTCAGTTTTGGGATGACTTTGCTTACCCCAAAGTCAATTCAGTGAGACAACCAAGATTTTAAATCAGGGATGTTTTGCCTATCCCTAGATCTATTCCATGTGATAACAAAGTTTTTtCTCCTTTTTtGGCTTCTTTTTCAAGTGGGTTTTTAAATTTTATTGGTATTTTTGTTTtGTTGTCTATTCTTTGAGAGTACCTTAAAAAATCAACTAATATTTCTTAAAGAAATATGAAAACTTTGAGAAAGAAGTTGTAGAGAACATCCGACGGTTGCCATGCCACCACCGGATTTTGATCTTCTTTCTGTTTTCTTAATTTATTAACCTTTTCCAATTAAAAGGGGCAGATCAATATATAATAACTTCCGTTGCAAAACCATTTCTTGAATTTTGTAGTTACGATAACTTTGCTCTTTCTGACAGTCGGAGAAACTCAACTACGAAAGACTCTAAATCACAGCTTTGGTCAACGATGCTCACTTGATGGTTTATAGTTTACACTcTTCCCGATGActCTGTAAAGATGTGTAGTTAATTCAAAATACATTAATAATTCATCGCAAGCCTTTGCAACCTTTATGCTTCTGTTGATATTTAACATCAAATTATGGATTAGTACAAAGAAAAGAAAAGTGTTATTATGAAGAATGATAATGTAACTAAGAAGTGATGGAAGAAAGCTCCAGAGAATCTTAGTTTTGAATGCCTGATCTAAGTTAATCATAGCAGGTAATAAACTAAAACTGATTATTACATGTACAGACCACTTTCCCTTTACAAGGACCAAAAAaTATTGTTACAAGGTACAAGATATATCTAATCAATTACATCATATCCCCGGTTAGAAAATTCTAGCTCACCATTTTCAATCAAGTACCCTTCTTTCAAATGCTGATACATGAATATCTCTTCACAATAAACTTCCAGAATTTCCATTTGAAAGCCCCAATGCTTAAATATTTCTGATACACAATGGATAAAAATACACCTGGGGATGTGAGGAAAATTCTTTTTCTATTTTTTtCATGAAAAGTTTAGTCAAAGAGGTCTTCTTGGTGATCCAAGATGAGTCTGCACTTTCAAGAGGGATGACTCTCGCGAAGGATCAAGGGTGAACAATGTGTTTGGTCTGGTGTTATATGCATATTCgTTCAAATTGTATCCACTTTGACCCACCCCCATGTAAGACGTGTGAGGTGGTGAAAGATAACAGCTCTGATGTGTGGGGCCATATGACCGTAATGGACTCGAACATGGAGAGACAGGCAAGGATGTGATCAATCTTCCATTTCCCCT

mRNA sequence

ATGGTTTTCTCTGCATCTTTTTCTCACAACTCATTCTCATGCCTAACTCAATTCCCACAAAATTTTAGAAGAAATCCACTTCGCTTTCATCTTATTCGAGCTGTGAAATCCACTGAACCGGAGAAGAAGGTGTCAGAGACCAAAACCCAGGAGCTTCCCGTGGCTGAACCTTCAAGTTCAAGCTCCCCCACTGCCTCTCCCAAGGTTTCAAAGAAGCCTGTCTATTCGATGAAGAAGGGTCAGATTGTGAGAGTTGACAAAGAGAAGTATCTTAATAGTGTTAATTATCTATCTGTTGGACATCCACCTTATTTCAAGGGCTTGGATTACATTTATGAAGACCGTGGTGAGGTATTGGATCTTCGCATTTTCGAGACAGGAGAATATGCACTTATTGCATGGGTTGGCATTCCGACTGCTCCAGCTTGGCTGCCGACAGAAATGCTTATAAAGTCGGAGAAACTCAACTACGAAAGACTCTAAATCACAGCTTTGGTCAACGATGCTCACTTGATGGTTTATAGTTTACACTCTTCCCGATGACTCTGTAAAGATGTGTAGTTAATTCAAAATACATTAATAATTCATCGCAAGCCTTTGCAACCTTTATGCTTCTGTTGATATTTAACATCAAATTATGGATTAGTACAAAGAAAAGAAAAGTGTTATTATGAAGAATGATAATGTAACTAAGAAGTGATGGAAGAAAGCTCCAGAGAATCTTAGTTTTGAATGCCTGATCTAAGTTAATCATAGCAGGTAATAAACTAAAACTGATTATTACATGTACAGACCACTTTCCCTTTACAAGGACCAAAAAATATTGTTACAAGGTACAAGATATATCTAATCAATTACATCATATCCCCGGTTAGAAAATTCTAGCTCACCATTTTCAATCAAGTACCCTTCTTTCAAATGCTGATACATGAATATCTCTTCACAATAAACTTCCAGAATTTCCATTTGAAAGCCCCAATGCTTAAATATTTCTGATACACAATGGATAAAAATACACCTGGGGATGTGAGGAAAATTCTTTTTCTATTTTTTTCATGAAAAGTTTAGTCAAAGAGGTCTTCTTGGTGATCCAAGATGAGTCTGCACTTTCAAGAGGGATGACTCTCGCGAAGGATCAAGGGTGAACAATGTGTTTGGTCTGGTGTTATATGCATATTCGTTCAAATTGTATCCACTTTGACCCACCCCCATGTAAGACGTGTGAGGTGGTGAAAGATAACAGCTCTGATGTGTGGGGCCATATGACCGTAATGGACTCGAACATGGAGAGACAGGCAAGGATGTGATCAATCTTCCATTTCCCCT

Coding sequence (CDS)

ATGGTTTTCTCTGCATCTTTTTCTCACAACTCaTTCTCATGCCTAACTCAATTCCCACAAAATTTTAGAAGAAAtCCACTTCGCTTTCATCTTATTCGAGCTGTGAAATCCACTGAACCGGAGAAGAAGGTGTCAGAGACCAAAACCCAGGAGCTTCCCGTGGCTGAACCTTCAAGTTCAAGCTCCCCCACTGCCTCTCCCAAGGTTTCAAAGAAGCCTGTCTATTCGATGAAGAAGGGTCAGATTGTGAGAGTTGACAAAGAGAAGTATCTTAATAGTGTTAATTATCTATCTGTTGGACATCCACCTTATTTCAAGGGCTTGGATTACATTTATGAAGACCGTGGTGAGGTATTGGATCTTCGCATTTTCGAGACAGGAGAATATGCACTTATTGCATGGGTTGGCATTCCGACTGCTCCAGCTTGGCTGCCGACAGAAATGCTTATAAAGTCGGAGAAACTCAACTACGAAAGACTCTAA

Protein sequence

MVFSASFSHNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPVAEPSSSSSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLDLRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL*

Homology

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BLAST of Cucsa.100900 vs. Swiss-Prot
Match: NDHO_ARATH (NAD(P)H-quinone oxidoreductase subunit O, chloroplastic OS=Arabidopsis thaliana GN=ndhO PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 8.3e-47
Identity = 100/162 (61.73%), Postives = 121/162 (74.69%), Query Frame = 1


Query: 1   MVFSASFSH-NSFSCLTQ-FPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPVAEPS 60
           M FSA+ S  +S S ++   P + RR P R  L +     E EK+   T+ +    A P+
Sbjct: 1   MAFSATVSQLSSLSTISSSLPISSRRLPHR-SLPQFTVKAEAEKEKQSTQGKSDGEASPA 60

Query: 61  SSSSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEV 120
           ++ +P   PK   KPVYSMKKGQIVRV+KEKYLNS+NYLSVGHPP++KGLDYIYEDRGEV
Sbjct: 61  ATKTPKTLPK---KPVYSMKKGQIVRVEKEKYLNSINYLSVGHPPFYKGLDYIYEDRGEV 120

Query: 121 LDLRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 161
           LDLR+FETGEYAL+ WVGIPTAPAWLPT+MLIK EKL YER+
Sbjct: 121 LDLRVFETGEYALVGWVGIPTAPAWLPTDMLIKCEKLVYERM 158

[Close]

BLAST of Cucsa.100900 vs. TrEMBL
Match: A0A0A0KHQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483310 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 4.8e-86
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1


Query: 1   MVFSASFSHNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPVAEPSSS 60
           MVFSASFSHNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPVAEPSSS
Sbjct: 1   MVFSASFSHNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPVAEPSSS 60

Query: 61  SSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLD 120
           SSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLD
Sbjct: 61  SSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLD 120

Query: 121 LRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 161
           LRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL
Sbjct: 121 LRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 160

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BLAST of Cucsa.100900 vs. TrEMBL
Match: D7U4E0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01310 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-60
Identity = 119/162 (73.46%), Postives = 138/162 (85.19%), Query Frame = 1


Query: 1   MVFSASFSHNSFSCLTQ-FPQNFRRNPLRFHLIRAVKSTEPEK-KVSETKTQELPVAEPS 60
           M FS++FSHNS SC +  FPQ  R +P RF  IRAVKS EP+K K++++ TQ+    + S
Sbjct: 1   MAFSSTFSHNSLSCFSSSFPQTPRPSPFRFTSIRAVKSAEPDKEKLAKSNTQQ----DSS 60

Query: 61  SSSSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEV 120
           ++  PT +PK  KKPVYSMKKGQIVRVDKEKYLNS+NYLSVGHPPY+KGLDYIYEDRGEV
Sbjct: 61  NAQPPTTAPKYPKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEV 120

Query: 121 LDLRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 161
           LDLRIFETGEYALIAWVGIPTAPAWLPT+MLIKS+KLNYER+
Sbjct: 121 LDLRIFETGEYALIAWVGIPTAPAWLPTDMLIKSDKLNYERM 158

[Close]

BLAST of Cucsa.100900 vs. TrEMBL
Match: W9R554_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019949 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.3e-58
Identity = 120/165 (72.73%), Postives = 134/165 (81.21%), Query Frame = 1


Query: 1   MVFSASFS---HNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEK--KVSETKTQELPVA 60
           M FSA+ S    +SF   + F Q  RRNP+R   IRAVKS EPEK  K +E KTQ+   A
Sbjct: 1   MAFSATLSSHLQSSFRRFSHFSQTSRRNPIRLRSIRAVKSAEPEKEKKATEAKTQDSSNA 60

Query: 61  EPSSSSSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDR 120
           +PSS   P  S K+ KKPVYSMKKGQIVRVDKEKYLNS+NYLSVGHPPY+KGLDYIYEDR
Sbjct: 61  QPSSPPKPAPS-KLLKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIYEDR 120

Query: 121 GEVLDLRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 161
           GEVLDLRIFETGE+AL+AWVGIPTAPAWLPT+MLIKSEKL+YERL
Sbjct: 121 GEVLDLRIFETGEHALVAWVGIPTAPAWLPTDMLIKSEKLDYERL 164

[Close]

BLAST of Cucsa.100900 vs. TrEMBL
Match: B9HER6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04100g PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.6e-58
Identity = 120/159 (75.47%), Postives = 135/159 (84.91%), Query Frame = 1


Query: 3   FSASFSHNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPV-AEPSSSS 62
           FSA+   +SF C +  PQ  RRN L    IRAVKSTEPEK+ + TKT+E    A+PS+S 
Sbjct: 4   FSATLLKSSFPCFSLLPQTLRRNHLHIPSIRAVKSTEPEKEKA-TKTEEPSTNAQPSTS- 63

Query: 63  SPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLDL 122
             TA+PK SKKP+YSMKKGQIVRVDKEKYLNSVNYLSVGHPPY+KGLDYIYEDRGEVLDL
Sbjct: 64  --TAAPK-SKKPIYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIYEDRGEVLDL 123

Query: 123 RIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 161
           RIFETGEYAL++WVG+PTAPAWLPT+MLIKSEKLNYERL
Sbjct: 124 RIFETGEYALVSWVGVPTAPAWLPTDMLIKSEKLNYERL 157

[Close]

BLAST of Cucsa.100900 vs. TrEMBL
Match: A9PJG3_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.6e-58
Identity = 120/159 (75.47%), Postives = 135/159 (84.91%), Query Frame = 1


Query: 3   FSASFSHNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPV-AEPSSSS 62
           FSA+   +SF C +  PQ  RRN L    IRAVKSTEPEK+ + TKT+E    A+PS+S 
Sbjct: 4   FSATLLKSSFPCFSLLPQTLRRNHLHIPSIRAVKSTEPEKEKA-TKTEEPSTNAQPSTS- 63

Query: 63  SPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLDL 122
             TA+PK SKKP+YSMKKGQIVRVDKEKYLNSVNYLSVGHPPY+KGLDYIYEDRGEVLDL
Sbjct: 64  --TAAPK-SKKPIYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIYEDRGEVLDL 123

Query: 123 RIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 161
           RIFETGEYAL++WVG+PTAPAWLPT+MLIKSEKLNYERL
Sbjct: 124 RIFETGEYALVSWVGVPTAPAWLPTDMLIKSEKLNYERL 157

[Close]

BLAST of Cucsa.100900 vs. TAIR10
Match: AT1G74880.1 (AT1G74880.1 NAD(P)H:plastoquinone dehydrogenase complex subunit O)

HSP 1 Score: 188.0 bits (476), Expect = 4.7e-48
Identity = 100/162 (61.73%), Postives = 121/162 (74.69%), Query Frame = 1


Query: 1   MVFSASFSH-NSFSCLTQ-FPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPVAEPS 60
           M FSA+ S  +S S ++   P + RR P R  L +     E EK+   T+ +    A P+
Sbjct: 1   MAFSATVSQLSSLSTISSSLPISSRRLPHR-SLPQFTVKAEAEKEKQSTQGKSDGEASPA 60

Query: 61  SSSSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEV 120
           ++ +P   PK   KPVYSMKKGQIVRV+KEKYLNS+NYLSVGHPP++KGLDYIYEDRGEV
Sbjct: 61  ATKTPKTLPK---KPVYSMKKGQIVRVEKEKYLNSINYLSVGHPPFYKGLDYIYEDRGEV 120

Query: 121 LDLRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 161
           LDLR+FETGEYAL+ WVGIPTAPAWLPT+MLIK EKL YER+
Sbjct: 121 LDLRVFETGEYALVGWVGIPTAPAWLPTDMLIKCEKLVYERM 158

[Close]

BLAST of Cucsa.100900 vs. NCBI nr
Match: gi|449461857|ref|XP_004148658.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 6.9e-86
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1


Query: 1   MVFSASFSHNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPVAEPSSS 60
           MVFSASFSHNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPVAEPSSS
Sbjct: 1   MVFSASFSHNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPVAEPSSS 60

Query: 61  SSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLD 120
           SSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLD
Sbjct: 61  SSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLD 120

Query: 121 LRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 161
           LRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL
Sbjct: 121 LRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 160

[Close]

BLAST of Cucsa.100900 vs. NCBI nr
Match: gi|659080926|ref|XP_008441053.1| (PREDICTED: uncharacterized protein LOC103485281 [Cucumis melo])

HSP 1 Score: 313.5 bits (802), Expect = 2.1e-82
Identity = 155/160 (96.88%), Postives = 155/160 (96.88%), Query Frame = 1


Query: 1   MVFSASFSHNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPVAEPSSS 60
           MVFSAS SHNSFSCLTQFPQNFRRNPLR HLIRAVKSTEPEKKV ETKTQE PVAEPSSS
Sbjct: 1   MVFSASLSHNSFSCLTQFPQNFRRNPLRVHLIRAVKSTEPEKKVPETKTQEPPVAEPSSS 60

Query: 61  SSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLD 120
           SSPTASPKV KKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLD
Sbjct: 61  SSPTASPKVPKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLD 120

Query: 121 LRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 161
           LRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL
Sbjct: 121 LRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 160

[Close]

BLAST of Cucsa.100900 vs. NCBI nr
Match: gi|225431463|ref|XP_002280638.1| (PREDICTED: uncharacterized protein LOC100248924 isoform X1 [Vitis vinifera])

HSP 1 Score: 240.4 bits (612), Expect = 2.3e-60
Identity = 119/162 (73.46%), Postives = 138/162 (85.19%), Query Frame = 1


Query: 1   MVFSASFSHNSFSCLTQ-FPQNFRRNPLRFHLIRAVKSTEPEK-KVSETKTQELPVAEPS 60
           M FS++FSHNS SC +  FPQ  R +P RF  IRAVKS EP+K K++++ TQ+    + S
Sbjct: 1   MAFSSTFSHNSLSCFSSSFPQTPRPSPFRFTSIRAVKSAEPDKEKLAKSNTQQ----DSS 60

Query: 61  SSSSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEV 120
           ++  PT +PK  KKPVYSMKKGQIVRVDKEKYLNS+NYLSVGHPPY+KGLDYIYEDRGEV
Sbjct: 61  NAQPPTTAPKYPKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEV 120

Query: 121 LDLRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 161
           LDLRIFETGEYALIAWVGIPTAPAWLPT+MLIKS+KLNYER+
Sbjct: 121 LDLRIFETGEYALIAWVGIPTAPAWLPTDMLIKSDKLNYERM 158

[Close]

BLAST of Cucsa.100900 vs. NCBI nr
Match: gi|703092826|ref|XP_010094739.1| (hypothetical protein L484_019949 [Morus notabilis])

HSP 1 Score: 232.3 bits (591), Expect = 6.1e-58
Identity = 120/165 (72.73%), Postives = 134/165 (81.21%), Query Frame = 1


Query: 1   MVFSASFS---HNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEK--KVSETKTQELPVA 60
           M FSA+ S    +SF   + F Q  RRNP+R   IRAVKS EPEK  K +E KTQ+   A
Sbjct: 1   MAFSATLSSHLQSSFRRFSHFSQTSRRNPIRLRSIRAVKSAEPEKEKKATEAKTQDSSNA 60

Query: 61  EPSSSSSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDR 120
           +PSS   P  S K+ KKPVYSMKKGQIVRVDKEKYLNS+NYLSVGHPPY+KGLDYIYEDR
Sbjct: 61  QPSSPPKPAPS-KLLKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIYEDR 120

Query: 121 GEVLDLRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 161
           GEVLDLRIFETGE+AL+AWVGIPTAPAWLPT+MLIKSEKL+YERL
Sbjct: 121 GEVLDLRIFETGEHALVAWVGIPTAPAWLPTDMLIKSEKLDYERL 164

[Close]

BLAST of Cucsa.100900 vs. NCBI nr
Match: gi|224095992|ref|XP_002310516.1| (hypothetical protein POPTR_0007s04100g [Populus trichocarpa])

HSP 1 Score: 231.9 bits (590), Expect = 8.0e-58
Identity = 120/159 (75.47%), Postives = 135/159 (84.91%), Query Frame = 1


Query: 3   FSASFSHNSFSCLTQFPQNFRRNPLRFHLIRAVKSTEPEKKVSETKTQELPV-AEPSSSS 62
           FSA+   +SF C +  PQ  RRN L    IRAVKSTEPEK+ + TKT+E    A+PS+S 
Sbjct: 4   FSATLLKSSFPCFSLLPQTLRRNHLHIPSIRAVKSTEPEKEKA-TKTEEPSTNAQPSTS- 63

Query: 63  SPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYEDRGEVLDL 122
             TA+PK SKKP+YSMKKGQIVRVDKEKYLNSVNYLSVGHPPY+KGLDYIYEDRGEVLDL
Sbjct: 64  --TAAPK-SKKPIYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIYEDRGEVLDL 123

Query: 123 RIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 161
           RIFETGEYAL++WVG+PTAPAWLPT+MLIKSEKLNYERL
Sbjct: 124 RIFETGEYALVSWVGVPTAPAWLPTDMLIKSEKLNYERL 157

The following BLAST results are available for this feature:

BLAST of Cucsa.100900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHO_ARATH	8.3e-47	61.73	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Cucsa.100900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHQ6_CUCSA	4.8e-86	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483310 PE=4 SV=1	[more]
D7U4E0_VITVI	1.6e-60	73.46	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01310 PE=4 SV=...	[more]
W9R554_9ROSA	4.3e-58	72.73	Uncharacterized protein OS=Morus notabilis GN=L484_019949 PE=4 SV=1	[more]
B9HER6_POPTR	5.6e-58	75.47	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04100g PE=4 SV=1	[more]
A9PJG3_9ROSI	5.6e-58	75.47	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]

BLAST of Cucsa.100900 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G74880.1	4.7e-48	61.73	NAD(P)H:plastoquinone dehydrogenase complex subunit O	[more]

BLAST of Cucsa.100900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461857\|ref\|XP_004148658.1\|	6.9e-86	100.00	PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic [Cucumis sati...	[more]
gi\|659080926\|ref\|XP_008441053.1\|	2.1e-82	96.88	PREDICTED: uncharacterized protein LOC103485281 [Cucumis melo]	[more]
gi\|225431463\|ref\|XP_002280638.1\|	2.3e-60	73.46	PREDICTED: uncharacterized protein LOC100248924 isoform X1 [Vitis vinifera]	[more]
gi\|703092826\|ref\|XP_010094739.1\|	6.1e-58	72.73	hypothetical protein L484_019949 [Morus notabilis]	[more]
gi\|224095992\|ref\|XP_002310516.1\|	8.0e-58	75.47	hypothetical protein POPTR_0007s04100g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020905	NdhO

Vocabulary: **Molecular Function**
Term	Definition
GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Vocabulary: **Cellular Component**
Term	Definition
GO:0005886	plasma membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0010155	regulation of proton transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.100900.1	Cucsa.100900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020905	NAD(P)H-quinone oxidoreductase subunit O	PFAM	PF11910	NdhO	coord: 77..151 score: 7.0
None	No IPR available	PANTHER	PTHR36728	FAMILY NOT NAMED	coord: 1..160 score: 8.5
None	No IPR available	PANTHER	PTHR36728:SF2	SUBFAMILY NOT NAMED	coord: 1..160 score: 8.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.100900	Cla008430	Watermelon (97103) v1	cgywmB137
Cucsa.100900	Csa6G483310	Cucumber (Chinese Long) v2	cgycuB121
Cucsa.100900	MELO3C008059	Melon (DHL92) v3.5.1	cgymeB132
Cucsa.100900	ClCG01G015390	Watermelon (Charleston Gray)	cgywcgB134
Cucsa.100900	CSPI06G26400	Wild cucumber (PI 183967)	cgycpiB122
Cucsa.100900	CmaCh03G010980	Cucurbita maxima (Rimu)	cgycmaB0231
Cucsa.100900	CmoCh03G010830	Cucurbita moschata (Rifu)	cgycmoB0227
Cucsa.100900	Lsi01G011570	Bottle gourd (USVL1VR-Ls)	cgylsiB125
Cucsa.100900	Cp4.1LG10g03610	Cucurbita pepo (Zucchini)	cgycpeB0211
Cucsa.100900	MELO3C008059.2	Melon (DHL92) v3.6.1	cgymedB132
Cucsa.100900	CsaV3_6G041610	Cucumber (Chinese Long) v3	cgycucB126
Cucsa.100900	Cla97C01G014350	Watermelon (97103) v2	cgywmbB127
Cucsa.100900	Bhi03G001039	Wax gourd	cgywgoB153
Cucsa.100900	Carg10531	Silver-seed gourd	carcgyB0280

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.100900	Cucurbita maxima (Rimu)	cgycmaB0235
Cucsa.100900	Cucurbita moschata (Rifu)	cgycmoB0233
Cucsa.100900	Cucurbita pepo (Zucchini)	cgycpeB0220
Cucsa.100900	Silver-seed gourd	carcgyB0918