Cp4.1LG10g03610 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g03610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	NADH dehydrogenase-like complex O
Location	Cp4.1LG10 : 1943662 .. 1947182 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGTGGATATGTGGTTTATCATTTTAGCGTTATCTCTGTTGAACTGCCCATCGAGTGAGGGACATATTTCTATATCTCACACACTAATCTCTATCCTTCTTCCGCCATGGCTTTCTCTGCATCTCTTTCTCACAACTCTTTCTCATGCCTCACTCAGTTCCCTCAAAGTTTTAGAAGAAACCCACAAAGTTCTAGAAGAAACCCACTTCGTTTTAATCCCATTCGAGCCCTAAAATCCACTGATCCGGAGAATAAGGCATCGGAGACCAAAACCCAGCAGCCCCCCATGGCTGAACCTTCAACCTCAAGCTCCCCCGCCGCCTCTCCCAAGGTTCTAAAGAAGCCCGTCTATTCGAGTGAGTTTCTTCTGCTATTCTGCTGCCCTCGTTCTTGAATTTGACGATTCATTTTAGATTTGTTGATTTCCTTCTTTTTTATGTGATTTCTGTAGTGAAGAAGGGTCAGATTGTGCGAGTTGATAAAGAGAAGTATCTTAATAGCGTTAATGTAAGTAGTTTTCTGGAATCGTTGTTTTTTTTGGGTGATTATTATAGCTATTAGCTACATAGTTTTAGCATGAATCTATTAGATAAAGGTTTCCACACGAATGTTTCGTTCCACTCTCCAATCAATGTAGGGTCTCACAATTTACCTCCTTTGGGGCCAATGTCTTCGTTGGCACACCGCCAAGTGATTGGCTCTTATACCATTTGTAACAGTTTTGGCCTATCATTGTCAAACTCGCAGTTTTAAAACGCGTCTGTTAGAGAAAGGTTTCCACATAATTATAACGAGTGTTTCGTTCCTCCCTCCAACTGATATGGGATCTCACAATCCATTCCCCTTGGGGGCCAGCGCCCTCGCTGGCACACCACTCAGTGTCTGGCTTTGATACCATTTGTAATAGTCCAACCCCACTGTGACCAGTTATTATCCGCTTTGGCCCGTTACATATCACCATCAGCCTCATAGTTATAAAACGCGTCTATTAGAGAGAAGTTTCCACACCCTCATAAGGAGTGCTTCGCTCCCCTCTCCCTTTGATGTGGGATCTCACAATTCACCCTCTTGGGGCCAGCATCCTCGTTGGCACCCCTCCCAATGATTGGCTCTTATATCATTTGTAACATTCCTCCGCTAGCAGATATTGTATGTTTTAACTCGTTACATATCGCTATCAACTTCACGGCTTTAAAATGTGTGTTCGGGAGAATTTTCCACACTCTTATAAAGAGTGATTCATTTCCCTCTCTAACTGACGTGGGATCTCACCCAATAATCCTATGATGACCCAACCTTTGTGCTCAATTATTATTGTCACGATTGGGGCAATGGGGAGACTGTGTGCTCAACCCTTTTTAATATCGTCATCACCATAAACTTTTAAAACACGAACATAATGTTAAAAGGTATGGAATTTGACATGTTTCTCATTTCTCCCATTGATTATTGGACTGATGACAATATTTTCTTCTTCTTTACCATTAGTATCTATCTGTTGGGCATCCACCTTATTACAAGGGCTTGGATTATATTTACGAAGACCGTGGCGAGGTCAGTTTACACGGATTACACACGAACGTGTTAAAATATACGAGGGACTTCTAAAAAGTCGATCTTCTTTTCAGGTATTGGATATTCGCATTTTTGAGACGGGGGAGTATGCACTTGTGAGTAACTTTCATTTGGGATCCATTTGTATATGATGCTTTGGCTTCCATCTTATGTCAAGTTCTTTCATTCCTGCTATATATTTGTAGTGTTACATTCTTACACAAAATTCTTGGACAGATTGCATGGGTTGGTGTCCCAACTGCACCAGCTTGGCTGCCGACTGACATGCTTATAAAGGTATTTATTCAAAAGCTGTTCTTGATATCTTGTTCTTGGTGACGAGTTTCGAATAAGCAAGACCATATATTTAAACATTAGAATCGTGGAGACCTACCCCGAGTGGGGAGGAGATTTCCCGTTTCCCGTTTAAGCAAGGAATGAAGGAAGGAGTGGGAAATATTTTATCCTCGTTAGATAAACGGGCCCAAAACTGAGATTATATTCTCCGTCCTGCCCCGTGGACATCTCTACTCCTATGACTTTGCTTTGATCTTCTTTCCTGTTTCTTTTCCTATTTACTTCCTTTGCTAACCATTTGTTGCATATATTATGATGCCTTCTCTCGTTCTGGCAGTCGGAGAAACTCAACTACGAAAGACTGTAATCACAGCTTTGAATCAAGGATGCCTCACTTGAAGGTTTATTCCTCATGTTTCTGTAAAGATTTGTAGTTAAAACTACATATTTTACACATATATTGATCTATAGGAACCTCCTGAATAGATATCTGTTTTGAATGCCTGATCTAAGTTGATGATAGCAGAGCTACTGAACTGAGTATTACATATACAGACCACCGTCACTTTACAAGGACCAAAAAGATATCTCTAACCAATTACATCATATATCATTACCCCACTTGCAAAATTTTCACAATGGTTACATAATGGATAAAATCACACCTGGGGCTGTCAGGAAGATGATTTTCTTCCTTGTTTTTAAAGAAAAGTTCAGTCATAGAGGTCTTCTTGGTGATCCGCCGTGAGTCCGAACTTTCAATAGTAACGACTCTCGTGATGGATCAAGGGTGAACAATGTGTTCGGTCTTGTGTTATATGCATATTCGTTTAAATTGTATCCGCTTTGACCCAACCCCATGTAAGATGTGTGTGGTGGTGAAAGATAACAGCTCTGGTGTGCGGGGCCATACGACCGTAATGGACTTGAACTAGGAGAGACAGGCAAGGATGTGATCAATCTTGCGTTTCCCCTGCACGTAGAGCGAGCGAGCACATTGGTCTCGAAGTGAGTATATAGAATTAGACAAAGAGAAGATTGTGAAGAAATGATGTTTTAGTACCTAGGACTCCTCGAAGCTCTGGAAGAGATTGTTGGGTTTGTTGCATAATCTCCATCGCATATGCTTATACTTTTTCGGTTTGGATGCCGATCTAACAATGGCTGCATATAAAGTTGCAAAGGTTTCAACTTCATGGCCAACTTTTCCGAGTGATTCTAAGTTCGAAAGGCTTACCGGAGTCTGGCTTCCATCGAAACTAAACAGGAATGCATCCATGGACAAGTTAACATCGGACGCTCTTGGTGTTACTGCATCTTGAACAAAAGGGTGATCCAGTAGTTCTGCAGCCGAAGGACGTGCAGCCGGGTCCCGTTGCAAGCATAATTGCACGAAACTTTTAGCATCATTCGAGAGATGGTCTGGAATTTCTGGAATGTCTTTACTATTCCCAATTTTGAAAATGGCAGCCACCTGTTAATGTCAAGATATAAGATAAGTATGGCCCCAGACAATATAACATGAGCAGCTCATGAAAAATTTGAGAGCAATATCTAAGGAAGATGTCGAACCCCTTCGTATTTGCTCCAAGGCGGTTTGGACGTCGCCATTTCAAGAACTGTACACCCTAAACTCCAAATGTCTACAGCAAGACTGTAGCCATTTGTA

mRNA sequence

GCTGTGGATATGTGGTTTATCATTTTAGCGTTATCTCTGTTGAACTGCCCATCGAGTGAGGGACATATTTCTATATCTCACACACTAATCTCTATCCTTCTTCCGCCATGGCTTTCTCTGCATCTCTTTCTCACAACTCTTTCTCATGCCTCACTCAGTTCCCTCAAAGTTTTAGAAGAAACCCACAAAGTTCTAGAAGAAACCCACTTCGTTTTAATCCCATTCGAGCCCTAAAATCCACTGATCCGGAGAATAAGGCATCGGAGACCAAAACCCAGCAGCCCCCCATGGCTGAACCTTCAACCTCAAGCTCCCCCGCCGCCTCTCCCAAGGTTCTAAAGAAGCCCGTCTATTCGATGAAGAAGGGTCAGATTGTGCGAGTTGATAAAGAGAAGTATCTTAATAGCGTTAATTATCTATCTGTTGGGCATCCACCTTATTACAAGGGCTTGGATTATATTTACGAAGACCGTGGCGAGGTATTGGATATTCGCATTTTTGAGACGGGGGAGTATGCACTTATTGCATGGGTTGGTGTCCCAACTGCACCAGCTTGGCTGCCGACTGACATGCTTATAAAGTCGGAGAAACTCAACTACGAAAGACTGTAATCACAGCTTTGAATCAAGGATGCCTCACTTGAAGGTTTATTCCTCATGTTTCTGTAAAGATTTGTAGTTAAAACTACATATTTTACACATATATTGATCTATAGGAACCTCCTGAATAGATATCTGTTTTGAATGCCTGATCTAAGTTGATGATAGCAGAGCTACTGAACTGAGTATTACATATACAGACCACCGTCACTTTACAAGGACCAAAAAGATATCTCTAACCAATTACATCATATATCATTACCCCACTTGCAAAATTTTCACAATGGTTACATAATGGATAAAATCACACCTGGGGCTGTCAGGAAGATGATTTTCTTCCTTGTTTTTAAAGAAAAGTTCAGTCATAGAGGTCTTCTTGGTGATCCGCCGTGAGTCCGAACTTTCAATAGTAACGACTCTCGTGATGGATCAAGGGTGAACAATGTGTTCGGTCTTGTGTTATATGCATATTCGTTTAAATTGTATCCGCTTTGACCCAACCCCATGTAAGATGTGTGTGGTGGTGAAAGATAACAGCTCTGGTGTGCGGGGCCATACGACCGTAATGGACTTGAACTAGGAGAGACAGGCAAGGATGTGATCAATCTTGCGTTTCCCCTGCACGTAGAGCGAGCGAGCACATTGGTCTCGAAGTGAGTATATAGAATTAGACAAAGAGAAGATTGTGAAGAAATGATGTTTTAGTACCTAGGACTCCTCGAAGCTCTGGAAGAGATTGTTGGGTTTGTTGCATAATCTCCATCGCATATGCTTATACTTTTTCGGTTTGGATGCCGATCTAACAATGGCTGCATATAAAGTTGCAAAGGTTTCAACTTCATGGCCAACTTTTCCGAGTGATTCTAAGTTCGAAAGGCTTACCGGAGTCTGGCTTCCATCGAAACTAAACAGGAATGCATCCATGGACAAGTTAACATCGGACGCTCTTGGTGTTACTGCATCTTGAACAAAAGGGTGATCCAGTAGTTCTGCAGCCGAAGGACGTGCAGCCGGGTCCCGTTGCAAGCATAATTGCACGAAACTTTTAGCATCATTCGAGAGATGGTCTGGAATTTCTGGAATGTCTTTACTATTCCCAATTTTGAAAATGGCAGCCACCTGTTAATGTCAAGATATAAGATAAGTATGGCCCCAGACAATATAACATGAGCAGCTCATGAAAAATTTGAGAGCAATATCTAAGGAAGATGTCGAACCCCTTCGTATTTGCTCCAAGGCGGTTTGGACGTCGCCATTTCAAGAACTGTACACCCTAAACTCCAAATGTCTACAGCAAGACTGTAGCCATTTGTA

Coding sequence (CDS)

ATGGCTTTCTCTGCATCTCTTTCTCACAACTCTTTCTCATGCCTCACTCAGTTCCCTCAAAGTTTTAGAAGAAACCCACAAAGTTCTAGAAGAAACCCACTTCGTTTTAATCCCATTCGAGCCCTAAAATCCACTGATCCGGAGAATAAGGCATCGGAGACCAAAACCCAGCAGCCCCCCATGGCTGAACCTTCAACCTCAAGCTCCCCCGCCGCCTCTCCCAAGGTTCTAAAGAAGCCCGTCTATTCGATGAAGAAGGGTCAGATTGTGCGAGTTGATAAAGAGAAGTATCTTAATAGCGTTAATTATCTATCTGTTGGGCATCCACCTTATTACAAGGGCTTGGATTATATTTACGAAGACCGTGGCGAGGTATTGGATATTCGCATTTTTGAGACGGGGGAGTATGCACTTATTGCATGGGTTGGTGTCCCAACTGCACCAGCTTGGCTGCCGACTGACATGCTTATAAAGTCGGAGAAACTCAACTACGAAAGACTGTAA

Protein sequence

MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDPENKASETKTQQPPMAEPSTSSSPAASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIYEDRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL

Homology

[Close]

BLAST of Cp4.1LG10g03610 vs. Swiss-Prot
Match: NDHO_ARATH (NAD(P)H-quinone oxidoreductase subunit O, chloroplastic OS=Arabidopsis thaliana GN=ndhO PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.5e-46
Identity = 103/167 (61.68%), Postives = 123/167 (73.65%), Query Frame = 1


Query: 1   MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDPENKASETKTQQPP 60
           MAFSA++S    S L+    S    P SSRR P R  P   +K+ + E +   T+ +   
Sbjct: 1   MAFSATVSQ--LSSLSTISSSL---PISSRRLPHRSLPQFTVKA-EAEKEKQSTQGKSDG 60

Query: 61  MAEPSTSSSPAASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIYE 120
            A P+ + +P   PK   KPVYSMKKGQIVRV+KEKYLNS+NYLSVGHPP+YKGLDYIYE
Sbjct: 61  EASPAATKTPKTLPK---KPVYSMKKGQIVRVEKEKYLNSINYLSVGHPPFYKGLDYIYE 120

Query: 121 DRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 168
           DRGEVLD+R+FETGEYAL+ WVG+PTAPAWLPTDMLIK EKL YER+
Sbjct: 121 DRGEVLDLRVFETGEYALVGWVGIPTAPAWLPTDMLIKCEKLVYERM 158

[Close]

BLAST of Cp4.1LG10g03610 vs. TrEMBL
Match: A0A0A0KHQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483310 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 3.2e-72
Identity = 141/167 (84.43%), Postives = 152/167 (91.02%), Query Frame = 1


Query: 1   MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDPENKASETKTQQPP 60
           M FSAS SHNSFSCLTQFPQ+FRRNP       LRF+ IRA+KST+PE K SETKTQ+ P
Sbjct: 1   MVFSASFSHNSFSCLTQFPQNFRRNP-------LRFHLIRAVKSTEPEKKVSETKTQELP 60

Query: 61  MAEPSTSSSPAASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIYE 120
           +AEPS+SSSP ASPKV KKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPY+KGLDYIYE
Sbjct: 61  VAEPSSSSSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYE 120

Query: 121 DRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 168
           DRGEVLD+RIFETGEYALIAWVG+PTAPAWLPT+MLIKSEKLNYERL
Sbjct: 121 DRGEVLDLRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 160

[Close]

BLAST of Cp4.1LG10g03610 vs. TrEMBL
Match: D7U4E0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01310 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-56
Identity = 118/168 (70.24%), Postives = 136/168 (80.95%), Query Frame = 1


Query: 1   MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDPEN-KASETKTQQP 60
           MAFS++ SHNS SC   F  SF   PQ+ R +P RF  IRA+KS +P+  K +++ TQQ 
Sbjct: 1   MAFSSTFSHNSLSC---FSSSF---PQTPRPSPFRFTSIRAVKSAEPDKEKLAKSNTQQ- 60

Query: 61  PMAEPSTSSSPAASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIY 120
              + S +  P  +PK  KKPVYSMKKGQIVRVDKEKYLNS+NYLSVGHPPYYKGLDYIY
Sbjct: 61  ---DSSNAQPPTTAPKYPKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIY 120

Query: 121 EDRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 168
           EDRGEVLD+RIFETGEYALIAWVG+PTAPAWLPTDMLIKS+KLNYER+
Sbjct: 121 EDRGEVLDLRIFETGEYALIAWVGIPTAPAWLPTDMLIKSDKLNYERM 158

[Close]

BLAST of Cp4.1LG10g03610 vs. TrEMBL
Match: W9R554_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019949 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-56
Identity = 121/169 (71.60%), Postives = 138/169 (81.66%), Query Frame = 1


Query: 1   MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDPEN--KASETKTQQ 60
           MAFSA+LS +  S   +F        Q+SRRNP+R   IRA+KS +PE   KA+E KTQ 
Sbjct: 1   MAFSATLSSHLQSSFRRFSHF----SQTSRRNPIRLRSIRAVKSAEPEKEKKATEAKTQD 60

Query: 61  PPMAEPSTSSSPAASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYI 120
              A+PS+   PA S K+LKKPVYSMKKGQIVRVDKEKYLNS+NYLSVGHPPYYKGLDYI
Sbjct: 61  SSNAQPSSPPKPAPS-KLLKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYI 120

Query: 121 YEDRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 168
           YEDRGEVLD+RIFETGE+AL+AWVG+PTAPAWLPTDMLIKSEKL+YERL
Sbjct: 121 YEDRGEVLDLRIFETGEHALVAWVGIPTAPAWLPTDMLIKSEKLDYERL 164

[Close]

BLAST of Cp4.1LG10g03610 vs. TrEMBL
Match: A0A067EHA6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031252mg PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-54
Identity = 117/170 (68.82%), Postives = 136/170 (80.00%), Query Frame = 1


Query: 1   MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDP--ENKASETKTQQ 60
           MA SA++S +SFSC T F QS       SR+NPLRF+ IR +K+     + K  +TKTQ 
Sbjct: 1   MALSATVSQSSFSCFTSFTQS-------SRKNPLRFSSIRPIKAAAEADKEKPKQTKTQD 60

Query: 61  PPMAEPSTSSSPA-ASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDY 120
              A  ++S  PA A+PK   KPVYSMKKGQIVRVDKEKYLNS+NYLSVGHPPYYKGLDY
Sbjct: 61  SNSASATSSVQPATAAPKRPNKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDY 120

Query: 121 IYEDRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 168
           IYEDRGEVLD+RIFETGE+AL+AWVG+PTAPAWLPTDMLIKS+KL+YERL
Sbjct: 121 IYEDRGEVLDLRIFETGEHALVAWVGIPTAPAWLPTDMLIKSDKLDYERL 163

[Close]

BLAST of Cp4.1LG10g03610 vs. TrEMBL
Match: V4T239_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002727mg PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-54
Identity = 117/170 (68.82%), Postives = 136/170 (80.00%), Query Frame = 1


Query: 1   MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDP--ENKASETKTQQ 60
           MA SA++S +SFSC T F QS       SR+NPLRF+ IR +K+     + K  +TKTQ 
Sbjct: 1   MALSATVSQSSFSCFTSFTQS-------SRKNPLRFSSIRPIKAAAEADKEKPKQTKTQD 60

Query: 61  PPMAEPSTSSSPA-ASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDY 120
              A  ++S  PA A+PK   KPVYSMKKGQIVRVDKEKYLNS+NYLSVGHPPYYKGLDY
Sbjct: 61  SNSASATSSVQPATAAPKRPNKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDY 120

Query: 121 IYEDRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 168
           IYEDRGEVLD+RIFETGE+AL+AWVG+PTAPAWLPTDMLIKS+KL+YERL
Sbjct: 121 IYEDRGEVLDLRIFETGEHALVAWVGIPTAPAWLPTDMLIKSDKLDYERL 163

[Close]

BLAST of Cp4.1LG10g03610 vs. TAIR10
Match: AT1G74880.1 (AT1G74880.1 NAD(P)H:plastoquinone dehydrogenase complex subunit O)

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-47
Identity = 103/167 (61.68%), Postives = 123/167 (73.65%), Query Frame = 1


Query: 1   MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDPENKASETKTQQPP 60
           MAFSA++S    S L+    S    P SSRR P R  P   +K+ + E +   T+ +   
Sbjct: 1   MAFSATVSQ--LSSLSTISSSL---PISSRRLPHRSLPQFTVKA-EAEKEKQSTQGKSDG 60

Query: 61  MAEPSTSSSPAASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIYE 120
            A P+ + +P   PK   KPVYSMKKGQIVRV+KEKYLNS+NYLSVGHPP+YKGLDYIYE
Sbjct: 61  EASPAATKTPKTLPK---KPVYSMKKGQIVRVEKEKYLNSINYLSVGHPPFYKGLDYIYE 120

Query: 121 DRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 168
           DRGEVLD+R+FETGEYAL+ WVG+PTAPAWLPTDMLIK EKL YER+
Sbjct: 121 DRGEVLDLRVFETGEYALVGWVGIPTAPAWLPTDMLIKCEKLVYERM 158

[Close]

BLAST of Cp4.1LG10g03610 vs. NCBI nr
Match: gi|659080926|ref|XP_008441053.1| (PREDICTED: uncharacterized protein LOC103485281 [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 3.5e-72
Identity = 141/167 (84.43%), Postives = 152/167 (91.02%), Query Frame = 1


Query: 1   MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDPENKASETKTQQPP 60
           M FSASLSHNSFSCLTQFPQ+FRRNP       LR + IRA+KST+PE K  ETKTQ+PP
Sbjct: 1   MVFSASLSHNSFSCLTQFPQNFRRNP-------LRVHLIRAVKSTEPEKKVPETKTQEPP 60

Query: 61  MAEPSTSSSPAASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIYE 120
           +AEPS+SSSP ASPKV KKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPY+KGLDYIYE
Sbjct: 61  VAEPSSSSSPTASPKVPKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYE 120

Query: 121 DRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 168
           DRGEVLD+RIFETGEYALIAWVG+PTAPAWLPT+MLIKSEKLNYERL
Sbjct: 121 DRGEVLDLRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 160

[Close]

BLAST of Cp4.1LG10g03610 vs. NCBI nr
Match: gi|449461857|ref|XP_004148658.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic [Cucumis sativus])

HSP 1 Score: 279.3 bits (713), Expect = 4.5e-72
Identity = 141/167 (84.43%), Postives = 152/167 (91.02%), Query Frame = 1


Query: 1   MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDPENKASETKTQQPP 60
           M FSAS SHNSFSCLTQFPQ+FRRNP       LRF+ IRA+KST+PE K SETKTQ+ P
Sbjct: 1   MVFSASFSHNSFSCLTQFPQNFRRNP-------LRFHLIRAVKSTEPEKKVSETKTQELP 60

Query: 61  MAEPSTSSSPAASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIYE 120
           +AEPS+SSSP ASPKV KKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPY+KGLDYIYE
Sbjct: 61  VAEPSSSSSPTASPKVSKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYFKGLDYIYE 120

Query: 121 DRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 168
           DRGEVLD+RIFETGEYALIAWVG+PTAPAWLPT+MLIKSEKLNYERL
Sbjct: 121 DRGEVLDLRIFETGEYALIAWVGIPTAPAWLPTEMLIKSEKLNYERL 160

[Close]

BLAST of Cp4.1LG10g03610 vs. NCBI nr
Match: gi|703092826|ref|XP_010094739.1| (hypothetical protein L484_019949 [Morus notabilis])

HSP 1 Score: 226.5 bits (576), Expect = 3.5e-56
Identity = 121/169 (71.60%), Postives = 138/169 (81.66%), Query Frame = 1


Query: 1   MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDPEN--KASETKTQQ 60
           MAFSA+LS +  S   +F        Q+SRRNP+R   IRA+KS +PE   KA+E KTQ 
Sbjct: 1   MAFSATLSSHLQSSFRRFSHF----SQTSRRNPIRLRSIRAVKSAEPEKEKKATEAKTQD 60

Query: 61  PPMAEPSTSSSPAASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYI 120
              A+PS+   PA S K+LKKPVYSMKKGQIVRVDKEKYLNS+NYLSVGHPPYYKGLDYI
Sbjct: 61  SSNAQPSSPPKPAPS-KLLKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYI 120

Query: 121 YEDRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 168
           YEDRGEVLD+RIFETGE+AL+AWVG+PTAPAWLPTDMLIKSEKL+YERL
Sbjct: 121 YEDRGEVLDLRIFETGEHALVAWVGIPTAPAWLPTDMLIKSEKLDYERL 164

[Close]

BLAST of Cp4.1LG10g03610 vs. NCBI nr
Match: gi|225431463|ref|XP_002280638.1| (PREDICTED: uncharacterized protein LOC100248924 isoform X1 [Vitis vinifera])

HSP 1 Score: 226.5 bits (576), Expect = 3.5e-56
Identity = 118/168 (70.24%), Postives = 136/168 (80.95%), Query Frame = 1


Query: 1   MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDPEN-KASETKTQQP 60
           MAFS++ SHNS SC   F  SF   PQ+ R +P RF  IRA+KS +P+  K +++ TQQ 
Sbjct: 1   MAFSSTFSHNSLSC---FSSSF---PQTPRPSPFRFTSIRAVKSAEPDKEKLAKSNTQQ- 60

Query: 61  PMAEPSTSSSPAASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIY 120
              + S +  P  +PK  KKPVYSMKKGQIVRVDKEKYLNS+NYLSVGHPPYYKGLDYIY
Sbjct: 61  ---DSSNAQPPTTAPKYPKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIY 120

Query: 121 EDRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 168
           EDRGEVLD+RIFETGEYALIAWVG+PTAPAWLPTDMLIKS+KLNYER+
Sbjct: 121 EDRGEVLDLRIFETGEYALIAWVGIPTAPAWLPTDMLIKSDKLNYERM 158

[Close]

BLAST of Cp4.1LG10g03610 vs. NCBI nr
Match: gi|567879323|ref|XP_006432220.1| (hypothetical protein CICLE_v10002727mg [Citrus clementina])

HSP 1 Score: 220.7 bits (561), Expect = 1.9e-54
Identity = 117/170 (68.82%), Postives = 136/170 (80.00%), Query Frame = 1


Query: 1   MAFSASLSHNSFSCLTQFPQSFRRNPQSSRRNPLRFNPIRALKSTDP--ENKASETKTQQ 60
           MA SA++S +SFSC T F QS       SR+NPLRF+ IR +K+     + K  +TKTQ 
Sbjct: 1   MALSATVSQSSFSCFTSFTQS-------SRKNPLRFSSIRPIKAAAEADKEKPKQTKTQD 60

Query: 61  PPMAEPSTSSSPA-ASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDY 120
              A  ++S  PA A+PK   KPVYSMKKGQIVRVDKEKYLNS+NYLSVGHPPYYKGLDY
Sbjct: 61  SNSASATSSVQPATAAPKRPNKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDY 120

Query: 121 IYEDRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 168
           IYEDRGEVLD+RIFETGE+AL+AWVG+PTAPAWLPTDMLIKS+KL+YERL
Sbjct: 121 IYEDRGEVLDLRIFETGEHALVAWVGIPTAPAWLPTDMLIKSDKLDYERL 163

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g03610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHO_ARATH	2.5e-46	61.68	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Cp4.1LG10g03610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHQ6_CUCSA	3.2e-72	84.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483310 PE=4 SV=1	[more]
D7U4E0_VITVI	2.4e-56	70.24	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01310 PE=4 SV=...	[more]
W9R554_9ROSA	2.4e-56	71.60	Uncharacterized protein OS=Morus notabilis GN=L484_019949 PE=4 SV=1	[more]
A0A067EHA6_CITSI	1.3e-54	68.82	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031252mg PE=4 SV=1	[more]
V4T239_9ROSI	1.3e-54	68.82	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002727mg PE=4 SV=1	[more]

BLAST of Cp4.1LG10g03610 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G74880.1	1.4e-47	61.68	NAD(P)H:plastoquinone dehydrogenase complex subunit O	[more]

BLAST of Cp4.1LG10g03610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080926\|ref\|XP_008441053.1\|	3.5e-72	84.43	PREDICTED: uncharacterized protein LOC103485281 [Cucumis melo]	[more]
gi\|449461857\|ref\|XP_004148658.1\|	4.5e-72	84.43	PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic [Cucumis sati...	[more]
gi\|703092826\|ref\|XP_010094739.1\|	3.5e-56	71.60	hypothetical protein L484_019949 [Morus notabilis]	[more]
gi\|225431463\|ref\|XP_002280638.1\|	3.5e-56	70.24	PREDICTED: uncharacterized protein LOC100248924 isoform X1 [Vitis vinifera]	[more]
gi\|567879323\|ref\|XP_006432220.1\|	1.9e-54	68.82	hypothetical protein CICLE_v10002727mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005886	plasma membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Vocabulary: **INTERPRO**
Term	Definition
IPR020905	NdhO

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0010155	regulation of proton transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g03610.1	Cp4.1LG10g03610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020905	NAD(P)H-quinone oxidoreductase subunit O	PFAM	PF11910	NdhO	coord: 84..158 score: 1.3
None	No IPR available	PANTHER	PTHR36728	FAMILY NOT NAMED	coord: 1..167 score: 4.2
None	No IPR available	PANTHER	PTHR36728:SF2	SUBFAMILY NOT NAMED	coord: 1..167 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g03610	Cucsa.100900	Cucumber (Gy14) v1	cgycpeB0211
Cp4.1LG10g03610	CmaCh03G010980	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g03610	CmoCh03G010830	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g03610	Cla008430	Watermelon (97103) v1	cpewmB075
Cp4.1LG10g03610	Csa6G483310	Cucumber (Chinese Long) v2	cpecuB085
Cp4.1LG10g03610	MELO3C008059	Melon (DHL92) v3.5.1	cpemeB069
Cp4.1LG10g03610	ClCG01G015390	Watermelon (Charleston Gray)	cpewcgB061
Cp4.1LG10g03610	CSPI06G26400	Wild cucumber (PI 183967)	cpecpiB080
Cp4.1LG10g03610	Lsi01G011570	Bottle gourd (USVL1VR-Ls)	cpelsiB054
Cp4.1LG10g03610	MELO3C008059.2	Melon (DHL92) v3.6.1	cpemedB092
Cp4.1LG10g03610	CsaV3_6G041610	Cucumber (Chinese Long) v3	cpecucB0092
Cp4.1LG10g03610	Bhi03G001039	Wax gourd	cpewgoB0087
Cp4.1LG10g03610	CsGy6G025890	Cucumber (Gy14) v2	cgybcpeB710
Cp4.1LG10g03610	Carg10531	Silver-seed gourd	carcpeB0337

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g03610	Cucurbita pepo (Zucchini)	cpecpeB076
Cp4.1LG10g03610	Cucurbita maxima (Rimu)	cmacpeB866
Cp4.1LG10g03610	Cucurbita moschata (Rifu)	cmocpeB806
Cp4.1LG10g03610	Silver-seed gourd	carcpeB1128