Cucsa.100730 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.100730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Iron-sulfur binding oxidoreductase
Location	scaffold00927 : 22460 .. 23168 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGTGATCAATCCATAGAATTAAGCATATTAAAAATATCAATTTAAGATCATGTCGTCGGACTTTGGAGAACATGTAGGAGAACATGCAGGCAGGAAGTACCAGTTCCGCTCGGGAGGAGCTTTCAGATCCATTGATAACTGTGCAAAGGACAGAGTTGTAGTAGAAATTGCCACATGGTCGTTGACTGTGGTTTCGGAAAAGCTTCAGGTTGAGCTCAAGCTTAGAGCTGTGGTGGCTGCTGCTATTGCTTTGTTTACAAAGGGCAAACTCTATCGATTTAAAATTCAGGTTGATGCTAAAACCAATTGTGGTTCGAGTGTCCAAACATATGATGTTGAAGTTTGGATCCCTCTTGTTGGTAAATGGGAAGTTAGATCTCACAGGCTTTGCTCTTAACAACTTAACCATGAACACCATCACCCTATTTTGATTGACTTTCTAAGCAAGTTTATATAAATAAGTGTTTATAAGTATAAAAaCAAAAAaCAAAAAAaTAATAATAATAAGTAAATAAAACAGAAGTGTTTGTAAACTATTTTAGAAAGTCAATCTAAACGGGCACTAAATTCCATTACAACTGCTCTCTCATGTACTTAATCAGGTTAGATCTATCTATCCTTGCTTTTCTATATCGCAATCAATAAAATAGTTAACTACTTTTGTTAATGTATATTTGATCTTTTCTTTTCTGGTGTGTGAATAATA

mRNA sequence

CCAAGTGATCAATCCATAGAATTAAGCATATTAAAAATATCAATTTAAGATCATGTCGTCGGACTTTGGAGAACATGTAGGAGAACATGCAGGCAGGAAGTACCAGTTCCGCTCGGGAGGAGCTTTCAGATCCATTGATAACTGTGCAAAGGACAGAGTTGTAGTAGAAATTGCCACATGGTCGTTGACTGTGGTTTCGGAAAAGCTTCAGGTTGAGCTCAAGCTTAGAGCTGTGGTGGCTGCTGCTATTGCTTTGTTTACAAAGGGCAAACTCTATCGATTTAAAATTCAGGTTGATGCTAAAACCAATTGTGGTTCGAGTGTCCAAACATATGATGTTGAAGTTTGGATCCCTCTTGTTGGTAAATGGGAAGTTAGATCTCACAGGCTTTGCTCTTAACAACTTAACCATGAACACCATCACCCTATTTTGATTGACTTTCTAAGCAAGTTTATATAAATAAGTGTTTataagtataaaaacaaaaaacaaaaaaataataataataagtaaataaaaCAGAAGTGTTTGTAAACTATTTTAGAAAGTCAATCTAAACGGGCACTAAATTCCATTACAACTGCTCTCTCATGTACTTAATCAGGTTAGATCTATCTATCCTTGCTTTTCTATATCGCAATCAATAAAATAGTTAACTACTTTTGTTAATGTATATTTGATCTTTTCTTTTCTGGTGTGTGAATAATA

Coding sequence (CDS)

ATGTCGTCGGACTTTGGAGAACATGTAGGAGAACATGCAGGCAGGAAGTACCAGTTCCGCTCGGGAGGAGCTTTCAGATCCATTGATAACTGTGCAAAGGACAGAGTTGTAGTAGAAATTGCCACATGGTCGTTGACTGTGGTTTCGGAAAAGCTTCAGGTTGAGCTCAAGCTTAGAGCTGTGGTGGCTGCTGCTATTGCTTTGTTTACAAAGGGCAAACTCTATCGATTTAAAATTCAGGTTGATGCTAAAACCAATTGTGGTTCGAGTGTCCAAACATATGATGTTGAAGTTTGGATCCCTCTTGTTGGTAAATGGGAAGTTAGATCTCACAGGCTTTGCTCTTAA

Protein sequence

MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRAVVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS*

Homology

[Close]

BLAST of Cucsa.100730 vs. TrEMBL
Match: A0A0A0KKM6_CUCSA (Iron-sulfur binding oxidoreductase OS=Cucumis sativus GN=Csa_6G465000 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.4e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA 60
           MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA
Sbjct: 1   MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA 60

Query: 61  VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS 116
           VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS
Sbjct: 61  VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS 115

[Close]

BLAST of Cucsa.100730 vs. NCBI nr
Match: gi|700193102|gb|KGN48306.1| (Iron-sulfur binding oxidoreductase [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 2.0e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA 60
           MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA
Sbjct: 1   MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA 60

Query: 61  VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS 116
           VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS
Sbjct: 61  VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS 115

The following BLAST results are available for this feature:

BLAST of Cucsa.100730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKM6_CUCSA	1.4e-58	100.00	Iron-sulfur binding oxidoreductase OS=Cucumis sativus GN=Csa_6G465000 PE=4 SV=1	[more]

BLAST of Cucsa.100730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193102\|gb\|KGN48306.1\|	2.0e-58	100.00	Iron-sulfur binding oxidoreductase [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.100730.1	Cucsa.100730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 23..100 score: 3.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.100730	Cla008418	Watermelon (97103) v1	cgywmB137
Cucsa.100730	MELO3C024610	Melon (DHL92) v3.5.1	cgymeB132
Cucsa.100730	ClCG01G015210	Watermelon (Charleston Gray)	cgywcgB134
Cucsa.100730	MELO3C024610.2	Melon (DHL92) v3.6.1	cgymedB132
Cucsa.100730	CsaV3_6G041360	Cucumber (Chinese Long) v3	cgycucB126
Cucsa.100730	Cla97C01G014200	Watermelon (97103) v2	cgywmbB127

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None