Cucsa.100730.1 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.100730.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionIron-sulfur binding oxidoreductase
Locationscaffold00927 : 22460 .. 23168 (+)
Sequence length709
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGTGATCAATCCATAGAATTAAGCATATTAAAAATATCAATTTAAGATCATGTCGTCGGACTTTGGAGAACATGTAGGAGAACATGCAGGCAGGAAGTACCAGTTCCGCTCGGGAGGAGCTTTCAGATCCATTGATAACTGTGCAAAGGACAGAGTTGTAGTAGAAATTGCCACATGGTCGTTGACTGTGGTTTCGGAAAAGCTTCAGGTTGAGCTCAAGCTTAGAGCTGTGGTGGCTGCTGCTATTGCTTTGTTTACAAAGGGCAAACTCTATCGATTTAAAATTCAGGTTGATGCTAAAACCAATTGTGGTTCGAGTGTCCAAACATATGATGTTGAAGTTTGGATCCCTCTTGTTGGTAAATGGGAAGTTAGATCTCACAGGCTTTGCTCTTAACAACTTAACCATGAACACCATCACCCTATTTTGATTGACTTTCTAAGCAAGTTTATATAAATAAGTGTTTATAAGTATAAAAaCAAAAAaCAAAAAAaTAATAATAATAAGTAAATAAAACAGAAGTGTTTGTAAACTATTTTAGAAAGTCAATCTAAACGGGCACTAAATTCCATTACAACTGCTCTCTCATGTACTTAATCAGGTTAGATCTATCTATCCTTGCTTTTCTATATCGCAATCAATAAAATAGTTAACTACTTTTGTTAATGTATATTTGATCTTTTCTTTTCTGGTGTGTGAATAATA

mRNA sequence

CCAAGTGATCAATCCATAGAATTAAGCATATTAAAAATATCAATTTAAGATCATGTCGTCGGACTTTGGAGAACATGTAGGAGAACATGCAGGCAGGAAGTACCAGTTCCGCTCGGGAGGAGCTTTCAGATCCATTGATAACTGTGCAAAGGACAGAGTTGTAGTAGAAATTGCCACATGGTCGTTGACTGTGGTTTCGGAAAAGCTTCAGGTTGAGCTCAAGCTTAGAGCTGTGGTGGCTGCTGCTATTGCTTTGTTTACAAAGGGCAAACTCTATCGATTTAAAATTCAGGTTGATGCTAAAACCAATTGTGGTTCGAGTGTCCAAACATATGATGTTGAAGTTTGGATCCCTCTTGTTGGTAAATGGGAAGTTAGATCTCACAGGCTTTGCTCTTAACAACTTAACCATGAACACCATCACCCTATTTTGATTGACTTTCTAAGCAAGTTTATATAAATAAGTGTTTataagtataaaaacaaaaaacaaaaaaataataataataagtaaataaaaCAGAAGTGTTTGTAAACTATTTTAGAAAGTCAATCTAAACGGGCACTAAATTCCATTACAACTGCTCTCTCATGTACTTAATCAGGTTAGATCTATCTATCCTTGCTTTTCTATATCGCAATCAATAAAATAGTTAACTACTTTTGTTAATGTATATTTGATCTTTTCTTTTCTGGTGTGTGAATAATA

Coding sequence (CDS)

ATGTCGTCGGACTTTGGAGAACATGTAGGAGAACATGCAGGCAGGAAGTACCAGTTCCGCTCGGGAGGAGCTTTCAGATCCATTGATAACTGTGCAAAGGACAGAGTTGTAGTAGAAATTGCCACATGGTCGTTGACTGTGGTTTCGGAAAAGCTTCAGGTTGAGCTCAAGCTTAGAGCTGTGGTGGCTGCTGCTATTGCTTTGTTTACAAAGGGCAAACTCTATCGATTTAAAATTCAGGTTGATGCTAAAACCAATTGTGGTTCGAGTGTCCAAACATATGATGTTGAAGTTTGGATCCCTCTTGTTGGTAAATGGGAAGTTAGATCTCACAGGCTTTGCTCTTAA

Protein sequence

MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRAVVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS*
Homology
[Close]
BLAST of Cucsa.100730.1 vs. TrEMBL
Match: A0A0A0KKM6_CUCSA (Iron-sulfur binding oxidoreductase OS=Cucumis sativus GN=Csa_6G465000 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.4e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA 60
           MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA
Sbjct: 1   MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA 60

Query: 61  VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS 116
           VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS
Sbjct: 61  VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS 115

[Close]
BLAST of Cucsa.100730.1 vs. NCBI nr
Match: gi|700193102|gb|KGN48306.1| (Iron-sulfur binding oxidoreductase [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 2.0e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA 60
           MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA
Sbjct: 1   MSSDFGEHVGEHAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRA 60

Query: 61  VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS 116
           VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS
Sbjct: 61  VVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRLCS 115

The following BLAST results are available for this feature:
BLAST of Cucsa.100730.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKM6_CUCSA1.4e-58100.00Iron-sulfur binding oxidoreductase OS=Cucumis sativus GN=Csa_6G465000 PE=4 SV=1[more]
BLAST of Cucsa.100730.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193102|gb|KGN48306.1|2.0e-58100.00Iron-sulfur binding oxidoreductase [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.100730Cucsa.100730gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.100730.1Cucsa.100730.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.100730.1.five_prime_UTR.1Cucsa.100730.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.100730.1.CDS.1Cucsa.100730.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.100730.1.three_prime_UTR.1Cucsa.100730.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 23..100
score: 3.