Cla008418 (gene) Watermelon (97103) v1

Overview
NameCla008418
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 9502553 .. 9502903 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGATCTTGGGAGTAACTATAGGAGGTGTGTTGAATATTGGTGGGCAAAATTGGGATGGTAGCCACAACTTGGAAGGTTTCGAAGCCATTGGGAATCTGGAAAACAAGATTTTGCATGAAATTGTAGAATTCGTGGTGCCAGTGATTGCGAAGGCGGTAGGACATGAGCTGAGGTTGAAGGCTATTGTGGCTGCTAGCCTTCAGCTGCGACCCAACGGCAAACTGTACCGCATTAAGGTGAAGGTGGAAGCCAAAGTGGACTGTATTTGGTTAACTAAAACATATGAGGCTGATGTCTTTATCCCATTTTTTGGCCCTTGGGAATGCAAATCTTTCCATCTTTGCTAA

mRNA sequence

ATGACGATCTTGGGAGTAACTATAGGAGGTGTGTTGAATATTGGTGGGCAAAATTGGGATGGTAGCCACAACTTGGAAGGTTTCGAAGCCATTGGGAATCTGGAAAACAAGATTTTGCATGAAATTGTAGAATTCGTGGTGCCAGTGATTGCGAAGGCGGTAGGACATGAGCTGAGGTTGAAGGCTATTGTGGCTGCTAGCCTTCAGCTGCGACCCAACGGCAAACTGTACCGCATTAAGGTGAAGGTGGAAGCCAAAGTGGACTGTATTTGGTTAACTAAAACATATGAGGCTGATGTCTTTATCCCATTTTTTGGCCCTTGGGAATGCAAATCTTTCCATCTTTGCTAA

Coding sequence (CDS)

ATGACGATCTTGGGAGTAACTATAGGAGGTGTGTTGAATATTGGTGGGCAAAATTGGGATGGTAGCCACAACTTGGAAGGTTTCGAAGCCATTGGGAATCTGGAAAACAAGATTTTGCATGAAATTGTAGAATTCGTGGTGCCAGTGATTGCGAAGGCGGTAGGACATGAGCTGAGGTTGAAGGCTATTGTGGCTGCTAGCCTTCAGCTGCGACCCAACGGCAAACTGTACCGCATTAAGGTGAAGGTGGAAGCCAAAGTGGACTGTATTTGGTTAACTAAAACATATGAGGCTGATGTCTTTATCCCATTTTTTGGCCCTTGGGAATGCAAATCTTTCCATCTTTGCTAA

Protein sequence

MTILGVTIGGVLNIGGQNWDGSHNLEGFEAIGNLENKILHEIVEFVVPVIAKAVGHELRLKAIVAASLQLRPNGKLYRIKVKVEAKVDCIWLTKTYEADVFIPFFGPWECKSFHLC
Homology
[Close]
BLAST of Cla008418 vs. TrEMBL
Match: A0A0A0KKM6_CUCSA (Iron-sulfur binding oxidoreductase OS=Cucumis sativus GN=Csa_6G465000 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 35/90 (38.89%), Postives = 61/90 (67.78%), Query Frame = 1 

Query: 28  FEAIGNL-ENKILHEIVEFVVPVIAKAVGHELRLKAIVAASLQLRPNGKLYRIKVKVEAK 87
           F +I N  +++++ EI  + + V+++ +  EL+L+A+VAA++ L   GKLYR K++V+AK
Sbjct: 25  FRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRAVVAAAIALFTKGKLYRFKIQVDAK 84

Query: 88  VDCIWLTKTYEADVFIPFFGPWECKSFHLC 117
            +C    +TY+ +V+IP  G WE +S  LC
Sbjct: 85  TNCGSSVQTYDVEVWIPLVGKWEVRSHRLC 114

[Close]
BLAST of Cla008418 vs. NCBI nr
Match: gi|700193102|gb|KGN48306.1| (Iron-sulfur binding oxidoreductase [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 35/90 (38.89%), Postives = 61/90 (67.78%), Query Frame = 1 

Query: 28  FEAIGNL-ENKILHEIVEFVVPVIAKAVGHELRLKAIVAASLQLRPNGKLYRIKVKVEAK 87
           F +I N  +++++ EI  + + V+++ +  EL+L+A+VAA++ L   GKLYR K++V+AK
Sbjct: 25  FRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLRAVVAAAIALFTKGKLYRFKIQVDAK 84

Query: 88  VDCIWLTKTYEADVFIPFFGPWECKSFHLC 117
            +C    +TY+ +V+IP  G WE +S  LC
Sbjct: 85  TNCGSSVQTYDVEVWIPLVGKWEVRSHRLC 114

The following BLAST results are available for this feature:
BLAST of Cla008418 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKM6_CUCSA1.8e-1038.89Iron-sulfur binding oxidoreductase OS=Cucumis sativus GN=Csa_6G465000 PE=4 SV=1[more]
BLAST of Cla008418 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193102|gb|KGN48306.1|2.6e-1038.89Iron-sulfur binding oxidoreductase [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU51689watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008418Cla008418.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU51689WMU51689transcribed_cluster