Cucsa.099890 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.099890
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	WD repeat-containing 62
Location	scaffold00926 : 552885 .. 553326 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTTATTTGTAGAGGTTTGCCATTGTATCGAAACCATGATCGAAATAGGAAGTGGCGTCGAATGGACGAAGAAGGCGGTAATTTTGTTTACCGAGAAGGAACTTTAGATCAAACAACCCTCAGTCTTTATAATTTCCATAAGGTCAATAACCAGAATAATAAGAGATACAAAAAGTACGATAGTATTACCAATGACGAAGAAAACAACGATCGCAGTAGAATGACTGAAGATAGTACAGAAGAAGATTCCATTTGCATTGTTAGTTTGAAAGATGTAATTACGTAGAAAGGGAGACTGGAAAACAACACATCAGAAACAATTTTGGCATATTTTCCCATTGGCTAATCCCAAACATGTATTCTTTAATTATTTGATGTCTTGTGAGAGATTATTAATTAGAGTTTCTAAGTCATACACATGAACAAAATTTTGCAAA

mRNA sequence

ATGTTGTTTATTTGTAGAGGTTTGCCATTGTATCGAAACCATGATCGAAATAGGAAGTGGCGTCGAATGGACGAAGAAGGCGGTAATTTTGTTTACCGAGAAGGAACTTTAGATCAAACAACCCTCAGTCTTTATAATTTCCATAAGGTCAATAACCAGAATAATAAGAGATACAAAAAGTACGATAGTATTACCAATGACGAAGAAAACAACGATCGCAGTAGAATGACTGAAGATAGTACAGAAGAAGATTCCATTTGCATTGTTAGTTTGAAAGATGTAATTACGTAGAAAGGGAGACTGGAAAACAACACATCAGAAACAATTTTGGCATATTTTCCCATTGGCTAATCCCAAACATGTATTCTTTAATTATTTGATGTCTTGTGAGAGATTATTAATTAGAGTTTCTAAGTCATACACATGAACAAAATTTTGCAAA

Coding sequence (CDS)

ATGTTGTTTATTTGTAGAGGTTTGCCATTGTATCGAAACCATGATCGAAATAGGAAGTGGCGTCGAATGGACGAAGAAGGCGGTAATTTTGTTTACCGAGAAGGAACTTTAGATCAAACAACCCTCAGTCTTTATAATTTCCATAAGGTCAATAACCAGAATAATAAGAGATACAAAAAGTACGATAGTATTACCAATGACGAAGAAAACAACGATCGCAGTAGAATGACTGAAGATAGTACAGAAGAAGATTCCATTTGCATTGTTAGTTTGAAAGATGTAATTACGTAG

Protein sequence

MLFICRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKYDSITNDEENNDRSRMTEDSTEEDSICIVSLKDVIT*

Homology

[Close]

BLAST of Cucsa.099890 vs. TrEMBL
Match: A0A0A0K4Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G027830 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.5e-47
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 1


Query: 2   LFICRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY 61
           LF  RGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY
Sbjct: 108 LFHIRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY 167

Query: 62  DSITNDEENNDRSRMTEDSTEEDSICIVSLKDVIT 97
           DSITNDEENNDRSRMTEDSTEEDSICIVSLKDVIT
Sbjct: 168 DSITNDEENNDRSRMTEDSTEEDSICIVSLKDVIT 202

[Close]

BLAST of Cucsa.099890 vs. TrEMBL
Match: A0A0D2S2S6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G138300 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 2   LFICRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY 61
           LF  RG+PLYR+HDR+RKWR M+E+   FVYREGTL+QTT +LY+F+K N      Y  Y
Sbjct: 120 LFHIRGMPLYRSHDRSRKWRCMEEDDSVFVYREGTLEQTTYTLYHFNKTNTS----YNGY 179

Query: 62  DSIT-NDEENNDRSRMTEDSTEEDSICIVSLKDVI 96
            SI   D+ NN+ + +        S C V LKD+I
Sbjct: 180 SSIVIRDKGNNNNATV--------SSCFVPLKDII 202

[Close]

BLAST of Cucsa.099890 vs. TrEMBL
Match: A0A0B0PZX2_GOSAR (WD repeat-containing 62 OS=Gossypium arboreum GN=F383_11577 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-14
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 2   LFICRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY 61
           +F  RG+PLYR+HDR+RKWR M+E+   FVYREGTL+QTT +LY+F+K N      Y  Y
Sbjct: 120 VFHIRGMPLYRSHDRSRKWRCMEEDDSVFVYREGTLEQTTYTLYHFNKTNTS----YNGY 179

Query: 62  DSIT-NDEENNDRSRMTEDSTEEDSICIVSLKDVI 96
            SI   D+ NN+ + +        S C V LKD+I
Sbjct: 180 SSIVIRDKGNNNNATV--------SSCFVPLKDII 202

[Close]

BLAST of Cucsa.099890 vs. TrEMBL
Match: A0A0B0NX75_GOSAR (Tubulin--tyrosine ligase OS=Gossypium arboreum GN=F383_00989 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.6e-13
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 1


Query: 2   LFICRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY 61
           LF  RG+PL+R++DR+RKWR M+E+ G FVYREGTL+QTT  +Y+F+K+N+ +   Y   
Sbjct: 120 LFHIRGMPLHRSNDRSRKWRCMEEDDGVFVYREGTLEQTTYKMYHFNKLNSNSCNGYNG- 179

Query: 62  DSITNDEENNDRSRMTEDSTEEDSICIVSLKDVI 96
             +  D+ NN+++            C V LKD+I
Sbjct: 180 AIVIRDKGNNNKNNTPVS-------CFVPLKDII 205

[Close]

BLAST of Cucsa.099890 vs. TrEMBL
Match: A0A0D2RPH8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G216100 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 2   LFICRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY 61
           LF  RG+PL+R++DR+RKWR M+E+ G FVYREGTL+QTT ++Y+F+K+N+ +   Y   
Sbjct: 120 LFHIRGMPLHRSNDRSRKWRCMEEDDGVFVYREGTLEQTTYNMYHFNKLNSNSCNGYNGA 179

Query: 62  DSITNDEENNDRSRMTEDSTEEDSICIVSLKDVI 96
             I     NN  +            C V LKD+I
Sbjct: 180 IVIRGKGNNNKNNTPVS--------CFVPLKDII 205

[Close]

BLAST of Cucsa.099890 vs. NCBI nr
Match: gi|449454317|ref|XP_004144902.1| (PREDICTED: uncharacterized protein LOC101221709 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 5.0e-47
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 1


Query: 2   LFICRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY 61
           LF  RGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY
Sbjct: 108 LFHIRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY 167

Query: 62  DSITNDEENNDRSRMTEDSTEEDSICIVSLKDVIT 97
           DSITNDEENNDRSRMTEDSTEEDSICIVSLKDVIT
Sbjct: 168 DSITNDEENNDRSRMTEDSTEEDSICIVSLKDVIT 202

[Close]

BLAST of Cucsa.099890 vs. NCBI nr
Match: gi|659100634|ref|XP_008451192.1| (PREDICTED: uncharacterized protein LOC103492564 [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-39
Identity = 81/96 (84.38%), Postives = 88/96 (91.67%), Query Frame = 1


Query: 2   LFICRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY 61
           LF  RGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTL+LYN HK+N+Q NKRYKKY
Sbjct: 108 LFHIRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLNLYNLHKMNSQKNKRYKKY 167

Query: 62  DSITNDEE-NNDRSRMTEDSTEEDSICIVSLKDVIT 97
           +SIT DEE NNDR +M +DST+EDSICIVSLKDVIT
Sbjct: 168 NSITKDEENNNDRGKMIDDSTDEDSICIVSLKDVIT 203

[Close]

BLAST of Cucsa.099890 vs. NCBI nr
Match: gi|823250926|ref|XP_012458048.1| (PREDICTED: uncharacterized protein LOC105778832 [Gossypium raimondii])

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-14
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 2   LFICRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY 61
           LF  RG+PLYR+HDR+RKWR M+E+   FVYREGTL+QTT +LY+F+K N      Y  Y
Sbjct: 120 LFHIRGMPLYRSHDRSRKWRCMEEDDSVFVYREGTLEQTTYTLYHFNKTNTS----YNGY 179

Query: 62  DSIT-NDEENNDRSRMTEDSTEEDSICIVSLKDVI 96
            SI   D+ NN+ + +        S C V LKD+I
Sbjct: 180 SSIVIRDKGNNNNATV--------SSCFVPLKDII 202

[Close]

BLAST of Cucsa.099890 vs. NCBI nr
Match: gi|728849593|gb|KHG29036.1| (WD repeat-containing 62 [Gossypium arboreum])

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-14
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 2   LFICRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY 61
           +F  RG+PLYR+HDR+RKWR M+E+   FVYREGTL+QTT +LY+F+K N      Y  Y
Sbjct: 120 VFHIRGMPLYRSHDRSRKWRCMEEDDSVFVYREGTLEQTTYTLYHFNKTNTS----YNGY 179

Query: 62  DSIT-NDEENNDRSRMTEDSTEEDSICIVSLKDVI 96
            SI   D+ NN+ + +        S C V LKD+I
Sbjct: 180 SSIVIRDKGNNNNATV--------SSCFVPLKDII 202

[Close]

BLAST of Cucsa.099890 vs. NCBI nr
Match: gi|1009109613|ref|XP_015891110.1| (PREDICTED: uncharacterized protein LOC107425612 [Ziziphus jujuba])

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 2   LFICRGLPLYRNHDRNRKWRRMDEEGGNFVYREGTLDQTTLSLYNFHKVNNQNNKRYKKY 61
           LF  RG+PLYR HDRNRKWRRM+E+   FV+R+GTL+Q T + Y F   N+ NN      
Sbjct: 118 LFHIRGMPLYRIHDRNRKWRRMEEDESVFVFRDGTLEQATYNRYRFDHKNSSNNG----- 177

Query: 62  DSITNDEENNDRSRMTEDSTEEDSICIVSLKDVI 96
              +N  ++N       ++T + S  IV+LKD+I
Sbjct: 178 ---SNGYKSNMLRNQGNNATTQTSCNIVALKDII 203

The following BLAST results are available for this feature:

BLAST of Cucsa.099890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4Z6_CUCSA	3.5e-47	97.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G027830 PE=4 SV=1	[more]
A0A0D2S2S6_GOSRA	1.3e-14	49.47	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G138300 PE=4 SV=1	[more]
A0A0B0PZX2_GOSAR	3.0e-14	48.42	WD repeat-containing 62 OS=Gossypium arboreum GN=F383_11577 PE=4 SV=1	[more]
A0A0B0NX75_GOSAR	9.6e-13	43.62	Tubulin--tyrosine ligase OS=Gossypium arboreum GN=F383_00989 PE=4 SV=1	[more]
A0A0D2RPH8_GOSRA	1.3e-12	43.62	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G216100 PE=4 SV=1	[more]

BLAST of Cucsa.099890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454317\|ref\|XP_004144902.1\|	5.0e-47	97.89	PREDICTED: uncharacterized protein LOC101221709 [Cucumis sativus]	[more]
gi\|659100634\|ref\|XP_008451192.1\|	1.7e-39	84.38	PREDICTED: uncharacterized protein LOC103492564 [Cucumis melo]	[more]
gi\|823250926\|ref\|XP_012458048.1\|	1.9e-14	49.47	PREDICTED: uncharacterized protein LOC105778832 [Gossypium raimondii]	[more]
gi\|728849593\|gb\|KHG29036.1\|	4.3e-14	48.42	WD repeat-containing 62 [Gossypium arboreum]	[more]
gi\|1009109613\|ref\|XP_015891110.1\|	1.4e-12	44.68	PREDICTED: uncharacterized protein LOC107425612 [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.099890.1	Cucsa.099890.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.099890	Csa7G027830	Cucumber (Chinese Long) v2	cgycuB111
Cucsa.099890	MELO3C015697	Melon (DHL92) v3.5.1	cgymeB122
Cucsa.099890	CSPI07G02250	Wild cucumber (PI 183967)	cgycpiB112
Cucsa.099890	CmaCh19G008110	Cucurbita maxima (Rimu)	cgycmaB0216
Cucsa.099890	CmoCh11G018000	Cucurbita moschata (Rifu)	cgycmoB0208
Cucsa.099890	Lsi11G013060	Bottle gourd (USVL1VR-Ls)	cgylsiB122
Cucsa.099890	Cp4.1LG04g04410	Cucurbita pepo (Zucchini)	cgycpeB0208
Cucsa.099890	Cp4.1LG15g06470	Cucurbita pepo (Zucchini)	cgycpeB0206
Cucsa.099890	MELO3C015697.2	Melon (DHL92) v3.6.1	cgymedB120
Cucsa.099890	CsaV3_7G002100	Cucumber (Chinese Long) v3	cgycucB116
Cucsa.099890	Cla97C02G029810	Watermelon (97103) v2	cgywmbB125
Cucsa.099890	Bhi05G001338	Wax gourd	cgywgoB145
Cucsa.099890	Carg04111	Silver-seed gourd	carcgyB0237
Cucsa.099890	Carg18104	Silver-seed gourd	carcgyB1183

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.099890	Cucurbita moschata (Rifu)	cgycmoB0212
Cucsa.099890	Cucurbita moschata (Rifu)	cgycmoB0210
Cucsa.099890	Cucurbita moschata (Rifu)	cgycmoB0211
Cucsa.099890	Wild cucumber (PI 183967)	cgycpiB111
Cucsa.099890	Cucumber (Chinese Long) v2	cgycuB110
Cucsa.099890	Melon (DHL92) v3.5.1	cgymeB119
Cucsa.099890	Watermelon (Charleston Gray)	cgywcgB130
Cucsa.099890	Watermelon (97103) v1	cgywmB130
Cucsa.099890	Cucurbita pepo (Zucchini)	cgycpeB0207
Cucsa.099890	Cucurbita pepo (Zucchini)	cgycpeB0210
Cucsa.099890	Bottle gourd (USVL1VR-Ls)	cgylsiB121
Cucsa.099890	Melon (DHL92) v3.6.1	cgymedB116
Cucsa.099890	Silver-seed gourd	carcgyB0405
Cucsa.099890	Silver-seed gourd	carcgyB0973
Cucsa.099890	Cucumber (Chinese Long) v3	cgycucB115
Cucsa.099890	Cucumber (Gy14) v1	cgycgyB040
Cucsa.099890	Cucumber (Gy14) v1	cgycgyB041
Cucsa.099890	Cucurbita maxima (Rimu)	cgycmaB0215
Cucsa.099890	Cucurbita maxima (Rimu)	cgycmaB0217
Cucsa.099890	Cucurbita maxima (Rimu)	cgycmaB0218