Cucsa.090080 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.090080
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTranslation initiation factor IF-3
Locationscaffold00894 : 1490341 .. 1493618 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGGCTCTCCGGCAGTTTCCCTTTCAAATCTCTCTTATCCCAATCCTCCGCCGCTGCCACCACCACCTCCTCCTCCTCCGCCGCACCTCCCCCAACATCCTCCTCTTCCACTACTCCCTTCCGAACTTCATTCCCcTCTCTTCCCATCTCCTCCTCTAATTCCAATGCCTTCAAATTCCGCCTTCACAAATCCAACTCTCTACGTCTCCTCTTTTCCTCTCCCGTTTCCTCTCCTATTCGTACTTCTGTATTTGCTCGACTCGGCGGCGCTCCTCGATCTTCTGGACCGCCTGATTCTAAGCGCTCTAACGATGAAATTGGTCTCGATATTTCCGCCATCAAGTTTGTGTCCTGTACTTGTACTAGTATGATTTATGGATTTTTTTTtATATATTTGGAGTTCTTAATTGTTTGGTTGCGTTTTTTGTGATTTATTTGTATAGGTCAATTAATGTGAGGCTTATCGATGCTGAACAGAATATGGTAGGTGTATGGTTTGTGCTTTGGGAAATATATATGTGTGTGTGTGTGTGTTTGTCTGTTTCCTTTTGCTACAATGCAATACTTGTATGCTAGGTGTGGTAGTTTGAAACGTTCATGTTCTTATAATGAATAGGTTGGAGTTGTGTCGAAGGCCCAAGCCATTCAAATGGCTGAAGATGCTGAACTTGATTTGGTATGTCTTCTTGCATCGTTTGTTGTTAAAATAATTGTTTGTCTATGAATTCCAAAGAACCTTGCACCAAAATTTAATCGCCTTTTGAGGAAACATTGTATAGTTCATATTTCTTTTACTAAAAAATGGAATTAAAAGCATATAATAATAAACTATTCGAAAAATTATAGATATAAGTTATAGCCTTTCATCCATAGCTAGAAGAACCATCGCATAGTGAATGGATTTCATTTCACAGCTGTGCATTAGGCCAATTTTACTGTTTGCTCTGATATTAAATTGTAATTTCCTTCTCCTATTTGTCAACACGAGACTTGGATAAATGCTGGATAATGCCTTGTTATTAAGATATATGATTAAAAGTTTCTTAGAACCTTTGAGTTGTCTGGATGCTCCTGGTGCAATAAACGATGCTCATTTCACATTCTGTTTTTTACTTCTTAACTTGGATAAAGAAGGTCGGGGGCTAATATTTTTCCTGGAATCCTAATATTTTCGTTGCTTTATGTAAGGTTTAGCTAATTCTTTTTATTCCGTTCAGGTTGTAGTATCCCCTGATGCAGATCCTCCAGTTGTTAGAATAATGGATTACAAGTATGCCACTTTCTCTCTCTGGTTTCCCCATTCCCTCTATGCTTGTGGATAAGGTTGTATTTTGCTTGAGTTCAATGCCAATATGATCAACTTTTATGATTAATTTCAATTCTTATGTTAAACATGTTGATGATATATTTTTACATTAATACTTTACTTTTAATTAAATGTTTCCGAGAAAGTATGGAAATATGGTGCAGTATAACGGTGACATAATGAAATAGGATGATTGTTATGTTGTTTTCACTGGGAGAATTGGAAGGCCACTTTTTTTTtCCTTATTACTATTTTGTTACTTTTATGTTGAGAATTTTCTTTTCCCGTCTTTTGTTTCTCAGTAAATATAGGTATGAACTGCAAaAAAaGAAAAGAGGACAACAGAAGAAAAGTGCTGGTGAATCTCTTTTTTAATAGAGTCTGCATATTTTCTTTGGTACACAAGTCTTTCAGATTTGTGGAAAGATACTGACAAAGTGTGGTTTTGAATGTTAGCAACTCGCATGGATTTGAAAGAGCTTAAAATGGGGTAACACATTCCTTCATCTCTCTGTCTCTTCTCTCTGGAGGTTTCCTTTTTTTTtCTTCTTTTTCTCGACTTAAAGCCACTTGAACTTGTGGCGTCTAAGATCAATAATCACCCAGCCTGCAAAAGCAAAGAGACATGAGAGGCCTTTGTCTGCTCTTTCAGAAACATTTATGCACATGTTCCTTTTCTCAATCTCGACCTTCTGGTTGTTATTATTGTTGCACAGTTATAACATCGACCAACATGATTACTCTGTCCGTTTGAAAGCTGCGAAGAAATTTTTAAAAGACGGTGACAAGGTTTCTTATCACATCTTCTATATCTTTCATCTTCTTTTCATGCATCCAGATATATCGTAATAGTTCGTCTGAATCACTTTGGAAGTCTTTTATCGAATATTGTAGGTTAAAGTTATAGTGAACCTGAAAGGTCGTGAAAATGAGTTCAGAAACATAGCAATTGAGCTCATCAGACGTTTCCAGGAAGAAGTTGGGGAGGTATTTATGTTGTATCAATTTTGTCTCGACTTCAATATCTGTTCATCATGGCAATACTAGAGAAAATGATTGCCCATTGTCCCTTGTTACTCAATACTGCAAATAATGGTTGTTTTATAGAACCATTTTTTTTtAAAAGAATGCTTAGAACCTAAAaCATTGTGATCATATTGCTTGTTTGTCTTGTTTCTTTCCTATTTGTGTCTGCTAATCTCTCTTTATCCCATATCCGTGCTTTGGGTTAATACCTGAAACCAAGTCTTACCTTCTCTTTATTTATCTCTCTTCCCCATTGACGTTCTCGTTATTTTATTATACACAGCTTGCAACTGAAGAGGCCAAGAACTTCAGAGACAGGAATATATTTATTGTTCTAGTCCCTAACAAGGCTGTTCTTCAAAAGGCTCAAGAACCTCCCAAGAAAAAAGATAAACCTGCAGTTAATGGAGTTTCTGCCAGTGTTTAGTCAAGCTTTCGCCAAAAATAGATGGGTTAGTTGCAACATTCTAAATCTTCTTCTACCATAGAGAAAATTTGAGAGATTAAATGTATAATGTTTTTGTTTAATCTTATGCATCAAACTGTTTTTCGTCCTATTTTTTtAGTGGAATGTTTAGAAATCAGACGTGTTACTAATTCTTTAGAAAACATCAATTCATATAACCATCCTTTGCTCTGACCGTAGTTTTTAGTGCCCTGGAGGATGGTGAGTTGATTTGAATCAATAACTAACAACTAACTAGTATGGTAGTTTTATTGGGAATTATGCATCCTTGCGACAGAGTTAGGTAGTTTGTCTCCCTCGAGCTAAAATTATTTTGGTTCCTATGTTCTAGAGTTTGTTAAGTTTTAGTCCTCGTTGATTTTAGTTCCTACCATTGGTTTATAGAGAATTGTAAAAAATGACAAAATAGACAAACTATTTACACTTTGCAAAATAAGTGTAATGAGTTTTTTCATTTAGTGGATTTTTGTTCTAG

mRNA sequence

ATGGCTGGGCTCTCCGGCAGTTTCCCTTTCAAATCTCTCTTATCCCAATcctccgccgctgccaccaccacctcctcctcctccgccgcacctcccccaacatcctcctcttccactactcccttccgaacttcattcccctctcttcccatctcctcctcTAATTCCAATGCCTTCAAATTCCGCCTTCACAAATCCAACTCTCTACGTCTCCTCTTTTCCTCTCCCGTTTCCTCTCCTATTCGTACTTCTGTATTTGCTCGACTCGGCGGCGCTCCTCGATCTTCTGGACCGCCTGATTCTAAGCGCTCTAACGATGAAATTGGTCTCGATATTTCCGCCATCAAGTCAATTAATGTGAGGCTTATCGATGCTGAACAGAATATGGTTGGAGTTGTGTCGAAGGCCCAAGCCATTCAAATGGCTGAAGATGCTGAACTTGATTTGGTTGTAGTATCCCCTGATGCAGATCCTCCAGTTGTTAGAATAATGGATTACAATAAATATAGGTATGAACTGCAAAAAAAGAAAAGAGGACAACAGAAGAAAAGTGCTGCAACTCGCATGGATTTGAAAGAGCTTAAAATGGGTTATAACATCGACCAACATGATTACTCTGTCCGTTTGAAAGCTGCGAAGAAATTTTTAAAAGACGGTGACAAGGTTAAAGTTATAGTGAACCTGAAAGGTCGTGAAAATGAGTTCAGAAACATAGCAATTGAGCTCATCAGACGTTTCCAGGAAGAAGTTGGGGAGCTTGCAACTGAAGAGGCCAAGAACTTCAGAGACAGGAATATATTTATTGTTCTAGTCCCTAACAAGGCTGTTCTTCAAAAGGCTCAAGAACCTCCCAAGAAAAAAGATAAACCTGCAGTTAATGGAGTTTCTGCCAGTGTTTAGTCAAGCTTTCGCCAAAAATAGATGGGTTAGTTGCAACATTCTAAATCTTCTTCTACCATAGAGAAAATTTGAGAGATTAAATGTATAATGTTTTTGTTTAATCTTATGCATCAAACTGTTTTTCGTCCTATTTTTTTAGTGGAATGTTTAGAAATCAGACGTGTTACTAATTCTTTAGAAAACATCAATTCATATAACCATCCTTTGCTCTGACCGTAGTTTTTAGTGCCCTGGAGGATGGTGAGTTGATTTGAATCAATAACTAACAACTAACTAGTATGGTAGTTTTATTGGGAATTATGCATCCTTGCGACAGAGTTAGGTAGTTTGTCTCCCTCGagctaaaattattttggttcctatgttctagagtttgttaagttttagtcctcgtTGATTTTAGTTCCTACCATTGGtttatagagaattgtaaaaaatgacaaaatagacaaactatttacactttgcaaaataagtgtaatgagttttttcatttagtggatttttgttctag

Coding sequence (CDS)

ATGGCTGGGCTCTCCGGCAGTTTCCCTTTCAAATCTCTCTTATCCCAATCCTCCGCCGCTGCCACCACCACCTCCTCCTCCTCCGCCGCACCTCCCCCAACATCCTCCTCTTCCACTACTCCCTTCCGAACTTCATTCCCcTCTCTTCCCATCTCCTCCTCTAATTCCAATGCCTTCAAATTCCGCCTTCACAAATCCAACTCTCTACGTCTCCTCTTTTCCTCTCCCGTTTCCTCTCCTATTCGTACTTCTGTATTTGCTCGACTCGGCGGCGCTCCTCGATCTTCTGGACCGCCTGATTCTAAGCGCTCTAACGATGAAATTGGTCTCGATATTTCCGCCATCAAGTCAATTAATGTGAGGCTTATCGATGCTGAACAGAATATGGTTGGAGTTGTGTCGAAGGCCCAAGCCATTCAAATGGCTGAAGATGCTGAACTTGATTTGGTTGTAGTATCCCCTGATGCAGATCCTCCAGTTGTTAGAATAATGGATTACAATAAATATAGGTATGAACTGCAAaAAAaGAAAAGAGGACAACAGAAGAAAAGTGCTGCAACTCGCATGGATTTGAAAGAGCTTAAAATGGGTTATAACATCGACCAACATGATTACTCTGTCCGTTTGAAAGCTGCGAAGAAATTTTTAAAAGACGGTGACAAGGTTAAAGTTATAGTGAACCTGAAAGGTCGTGAAAATGAGTTCAGAAACATAGCAATTGAGCTCATCAGACGTTTCCAGGAAGAAGTTGGGGAGCTTGCAACTGAAGAGGCCAAGAACTTCAGAGACAGGAATATATTTATTGTTCTAGTCCCTAACAAGGCTGTTCTTCAAAAGGCTCAAGAACCTCCCAAGAAAAAAGATAAACCTGCAGTTAATGGAGTTTCTGCCAGTGTTTAG

Protein sequence

MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFKFRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINVRLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV*
Homology
[Close]
BLAST of Cucsa.090080 vs. Swiss-Prot
Match: IF3_MICAN (Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) GN=infC PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-33
Identity = 72/176 (40.91%), Postives = 118/176 (67.05%), Query Frame = 1 

Query: 100 DSKRSNDEIGLDISAIKSINVRLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPP 159
           D +R+  ++      I+   +R+ID++ + +G+++ A+A+++AE+ ELDLV+VS  A PP
Sbjct: 3   DKRRTTRDLPQINERIRFPEIRVIDSDGSQLGIITPAEALRVAEEKELDLVLVSETASPP 62

Query: 160 VVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDG 219
           V RIMDY KY++E +KK R  +KK      D+KE+KM Y ID+HDY+VR+  A++FLK G
Sbjct: 63  VCRIMDYGKYKFEQEKKAREAKKKQHTA--DIKEVKMRYKIDEHDYNVRVNQAQRFLKAG 122

Query: 220 DKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELA-TEEAKNFRDRNIFIVLVPNK 275
           DKVK  +  +GRE +  N+A EL+ R  +++ ++A  ++A     RN+ ++L P K
Sbjct: 123 DKVKATITFRGREIQHSNLAEELLARMAKDLQDVAEVQQAPKKEGRNMMMMLSPKK 176

[Close]
BLAST of Cucsa.090080 vs. Swiss-Prot
Match: IF3_SYNS3 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9311) GN=infC PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-32
Identity = 79/175 (45.14%), Postives = 115/175 (65.71%), Query Frame = 1 

Query: 120 VRLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRG 179
           +R++DA+   +GV+ + QA+++A + ELDLV+VS  ADPPV RIMDY K+++E +KK + 
Sbjct: 28  LRVVDADGEQLGVIDREQALEVARERELDLVLVSEKADPPVCRIMDYGKFKFEQEKKAKE 87

Query: 180 QQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIA 239
            +KKS  T  ++KE+KM Y IDQHDY VR+  A++FLK GDKVK  V  +GRE +   +A
Sbjct: 88  AKKKSHQT--EVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALA 147

Query: 240 IELIRRFQEEVGELATEEAKNFRD-RNIFIVLVPNKAVLQKAQEPPKKKDKPAVN 294
             L+RR  +++ E A  +    R+ RN+ + L P KA L K     K KD+  VN
Sbjct: 148 EVLLRRMAKDLEEPAEVQQPPKREGRNMIMFLTPRKAPLVK-----KDKDEEVVN 195

[Close]
BLAST of Cucsa.090080 vs. Swiss-Prot
Match: IF3_SYNSC (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9605) GN=infC PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-32
Identity = 75/171 (43.86%), Postives = 113/171 (66.08%), Query Frame = 1 

Query: 120 VRLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRG 179
           +R++D++   +GV+S+ +A+ +A D ELDLV+VS  ADPPV RIMDY K+++E +KK + 
Sbjct: 28  LRVVDSDGAQLGVISREEALDVARDRELDLVLVSEKADPPVCRIMDYGKFKFEQEKKAKE 87

Query: 180 QQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIA 239
            +KKS  T  ++KE+KM Y IDQHDY VR+  A++FLK GDKVK  V  +GRE +   +A
Sbjct: 88  AKKKSHQT--EVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALA 147

Query: 240 IELIRRFQEEVGELA-TEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDK 290
             L+RR  +++ E A  ++A     RN+ + L P K  L K +E  +  +K
Sbjct: 148 ETLLRRMAKDLEEKAEIQQAPKREGRNMIMFLTPRKTPLVKKEEKEQAANK 196

[Close]
BLAST of Cucsa.090080 vs. Swiss-Prot
Match: IF3_CALS4 (Translation initiation factor IF-3 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=infC PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-32
Identity = 69/161 (42.86%), Postives = 111/161 (68.94%), Query Frame = 1 

Query: 115 IKSINVRLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQ 174
           I+   VRLID +   +G++S  +A ++A++  LDLV + P+A+PPV ++MD+ KYRYEL 
Sbjct: 21  IRDKEVRLIDQDGKQIGIMSAKEAYKIAQERHLDLVKIVPNANPPVCKLMDFGKYRYELS 80

Query: 175 KKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENE 234
           K+++  +KK     +++KE++M  NI+ HD+ V+LK+A KFLKDGDKVKV +  +GRE  
Sbjct: 81  KREKEAKKKQKI--INVKEIRMSPNIEDHDFGVKLKSAIKFLKDGDKVKVTIRFRGREAA 140

Query: 235 FRNIAIELIRRFQEEVGELA-TEEAKNFRDRNIFIVLVPNK 275
             ++A +L++RF EE+ E    E+A +   RN+ +V+ P K
Sbjct: 141 HTSLAEDLLKRFAEELREYGNVEKAPSMDGRNMMMVIAPKK 179

[Close]
BLAST of Cucsa.090080 vs. Swiss-Prot
Match: IF3_SYNPW (Translation initiation factor IF-3 OS=Synechococcus sp. (strain WH7803) GN=infC PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-32
Identity = 77/177 (43.50%), Postives = 116/177 (65.54%), Query Frame = 1 

Query: 120 VRLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRG 179
           +R++DA+   +GV+ + +A+++A++ ELDLV+VS  ADPPV RIMDY KY++E +KK + 
Sbjct: 28  LRVVDADGTQLGVIDREKALEVAQERELDLVLVSEKADPPVCRIMDYGKYKFEQEKKAKE 87

Query: 180 QQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIA 239
            +KKS  T  ++KE+KM Y IDQHDY VR+  A++FLK GDKVK  V  +GRE +   +A
Sbjct: 88  AKKKSHQT--EVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALA 147

Query: 240 IELIRRFQEEVGELATEEAKNFRD-RNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGV 296
             L+RR  +++ E A  +    R+ RN+ + L P K  L K  +    K++PA   V
Sbjct: 148 ETLLRRMAKDLEEPAEIQQPPKREGRNMIMFLTPRKTPLVKKDD----KEEPATRAV 198

[Close]
BLAST of Cucsa.090080 vs. TrEMBL
Match: A0A0A0LH34_CUCSA (Translation initiation factor IF-3 OS=Cucumis sativus GN=Csa_2G036070 PE=3 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 8.5e-161
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 1 

Query: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK 60
           MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK
Sbjct: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK 60

Query: 61  FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINV 120
           FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINV
Sbjct: 61  FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINV 120

Query: 121 RLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQ 180
           RLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQ
Sbjct: 121 RLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQ 180

Query: 181 QKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAI 240
           QKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAI
Sbjct: 181 QKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAI 240

Query: 241 ELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV 300
           ELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV
Sbjct: 241 ELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV 299

[Close]
BLAST of Cucsa.090080 vs. TrEMBL
Match: B9T4Q8_RICCO (Translation initiation factor IF-3 OS=Ricinus communis GN=RCOM_0443750 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 3.1e-94
Identity = 198/301 (65.78%), Postives = 223/301 (74.09%), Query Frame = 1 

Query: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK 60
           MAG++ SFPF  LL+Q + A  TT                          +SS  S  F 
Sbjct: 1   MAGITTSFPFNPLLTQLTTATKTTQ-----------------------FILSSLESKLFG 60

Query: 61  FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSN--DEIGLDISAIKSI 120
            R H S    L+  S  S  + TS  AR GG  RSSG   S++S+  D+  LDIS I+S 
Sbjct: 61  LRFHCSKPDSLISLSRAS--VVTS--ARFGGGFRSSGDRRSRQSDSEDDHALDISTIRSA 120

Query: 121 NVRLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKR 180
            VRLID +QNMVGVV K++AIQMAE+A LDLV++SPDADPPVVRIMDYNKYRYELQKKK+
Sbjct: 121 TVRLIDEQQNMVGVVPKSEAIQMAENAALDLVILSPDADPPVVRIMDYNKYRYELQKKKK 180

Query: 181 GQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNI 240
           GQQKKSAATRMDLKELKMGYNIDQHDY VRL+AA+KFLKDGDKVKVIVNLKGRENEFRNI
Sbjct: 181 GQQKKSAATRMDLKELKMGYNIDQHDYDVRLRAARKFLKDGDKVKVIVNLKGRENEFRNI 240

Query: 241 AIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSAS 300
           AIELIRRFQ +VGELATEE KNFRDRNIFI L PNKA+LQK+QEPPKK+DK AVN VSA 
Sbjct: 241 AIELIRRFQNDVGELATEETKNFRDRNIFITLAPNKAILQKSQEPPKKRDKSAVNEVSAG 274

[Close]
BLAST of Cucsa.090080 vs. TrEMBL
Match: B9IMB4_POPTR (Translation initiation factor IF-3 OS=Populus trichocarpa GN=POPTR_0018s11300g PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 3.2e-91
Identity = 193/283 (68.20%), Postives = 221/283 (78.09%), Query Frame = 1 

Query: 19  AAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFKFRLHKSNSLRLLFSSPVS 78
           A  T+ SSSS  P  T +++T   +T+  +L +SS +S  F  RLH  N L    S P S
Sbjct: 2   AGITSASSSSCFPLVTRTTTT---KTTHYALCLSSLDSKLFGLRLHNPN-LSKPDSLPCS 61

Query: 79  SPIRTSVFARLGGAPRS--SGPPDSKRSNDEIGLDISAIKSINVRLIDAEQNMVGVVSKA 138
           SP   +  AR GG PRS  S  P    S+D+  L+IS+I+S  VRLID +QNMVGVV+  
Sbjct: 62  SPSPVTT-ARFGG-PRSYDSRRPRKSDSDDDQALNISSIRSATVRLIDQQQNMVGVVTVR 121

Query: 139 QAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKM 198
            AIQMAED EL+LV+VSPDADPPVVRIMDYNK+RYE QKKKRGQQKKSAA+RMDLKELKM
Sbjct: 122 DAIQMAEDTELNLVIVSPDADPPVVRIMDYNKFRYEQQKKKRGQQKKSAASRMDLKELKM 181

Query: 199 GYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATE 258
           GYNIDQHDY VRL+AA+KFLKDGDKVKVIVNLKGRENEFRN AIEL+RRFQ +VGELATE
Sbjct: 182 GYNIDQHDYDVRLRAARKFLKDGDKVKVIVNLKGRENEFRNNAIELLRRFQNDVGELATE 241

Query: 259 EAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV 300
           E+KNFRDRN FI LVPNKA+LQKAQEPPKKKDK A + VSA V
Sbjct: 242 ESKNFRDRNAFITLVPNKALLQKAQEPPKKKDKSAADEVSAGV 278

[Close]
BLAST of Cucsa.090080 vs. TrEMBL
Match: A0A067KUU8_JATCU (Translation initiation factor IF-3 OS=Jatropha curcas GN=JCGZ_04056 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 5.5e-91
Identity = 190/284 (66.90%), Postives = 218/284 (76.76%), Query Frame = 1 

Query: 19  AAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFKFRLHKSNSLRLLFSSPVS 78
           A  T+TSS     P TS       RT+   L +SS  S  F  RL  SN  +   S  +S
Sbjct: 2   AGITSTSSFFILTPTTS-------RTTPSLLSLSSLESKLFGLRLPGSNLSKPDSSIALS 61

Query: 79  SPIRTS-VFARLGGAPRSSGPPDSKRSN--DEIGLDISAIKSINVRLIDAEQNMVGVVSK 138
                S V AR GG+        S++S+  DE  LD+S I+S +VRLID +QNMVGVV K
Sbjct: 62  YAFSISEVTARYGGSRSGFDSRRSRKSDSDDEQALDMSIIRSASVRLIDEQQNMVGVVPK 121

Query: 139 AQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELK 198
            QAIQMAEDAELDLV++SP+ADPPVVRIMDYNKYRYELQKKK+GQQKKSAATRMDLKELK
Sbjct: 122 TQAIQMAEDAELDLVILSPEADPPVVRIMDYNKYRYELQKKKKGQQKKSAATRMDLKELK 181

Query: 199 MGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELAT 258
           MGYNIDQHDY VRL+AA+KFLKDGDKVKVIVNLKGREN+FRNIAIELIRRFQ ++GELAT
Sbjct: 182 MGYNIDQHDYDVRLRAAQKFLKDGDKVKVIVNLKGRENDFRNIAIELIRRFQNDIGELAT 241

Query: 259 EEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV 300
           EE+KNFRDRNIFI LVPNKA+LQK+QEPPKK++K A N +SA V
Sbjct: 242 EESKNFRDRNIFITLVPNKAILQKSQEPPKKREKSATNEISAGV 278

[Close]
BLAST of Cucsa.090080 vs. TrEMBL
Match: V4U1W7_9ROSI (Translation initiation factor IF-3 OS=Citrus clementina GN=CICLE_v10009165mg PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.6e-90
Identity = 188/271 (69.37%), Postives = 208/271 (76.75%), Query Frame = 1 

Query: 37  SSTTPFRTSFPSLPISSSNSNAFKFRLHKSNSLRLLFSSPVSSPIRTSVFARLGGA--PR 96
           +S   F  + PSL  SS  S  F   L   N   L+  SP S     S+ AR GG   PR
Sbjct: 5   ASAFHFSKTTPSL--SSIESKFFGLHLCNLNHFFLISFSPSSHHHNVSITARYGGGGGPR 64

Query: 97  SSGPPDSKRSNDEIGL------DISAIKSINVRLIDAEQNMVGVVSKAQAIQMAEDAELD 156
            +G   S+R   E  L      DI  I+S  VRLIDA+QNMVG+V K++AIQMAEDAELD
Sbjct: 65  FAGSDYSRRRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELD 124

Query: 157 LVVVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR 216
           LV+VSPDADPPVVR+MDYNKYRYE QKKK+GQQKKSAA RMDLKELKMGYNIDQHDYSVR
Sbjct: 125 LVIVSPDADPPVVRVMDYNKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVR 184

Query: 217 LKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFI 276
           LKAA+KFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ +VGELA+EE KNFRDRNIFI
Sbjct: 185 LKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFI 244

Query: 277 VLVPNKAVLQKAQEPPKKKDKPAVNGVSASV 300
           +LVPNKA+LQKAQEPPKKKDK  V+ VS  V
Sbjct: 245 ILVPNKALLQKAQEPPKKKDKQVVDEVSTGV 273

[Close]
BLAST of Cucsa.090080 vs. TAIR10
Match: AT4G30690.1 (AT4G30690.1 Translation initiation factor 3 protein)

HSP 1 Score: 298.9 bits (764), Expect = 3.5e-81
Identity = 154/214 (71.96%), Postives = 182/214 (85.05%), Query Frame = 1 

Query: 90  GGAPRSSGPPD----SKRSNDEIGLDISAIKSINVRLIDAEQNMVGVVSKAQAIQMAEDA 149
           GG   S  P D     K S D+  LDISAI+S  VRLID +QNM+G+VSK +A++ AEDA
Sbjct: 62  GGGGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDA 121

Query: 150 ELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDY 209
           ELDLV++SPDADPPVVR+MDY+KYRYE QK+K+ QQKK+  TRMDLKELKMGYNIDQHDY
Sbjct: 122 ELDLVILSPDADPPVVRMMDYSKYRYEQQKRKKEQQKKT--TRMDLKELKMGYNIDQHDY 181

Query: 210 SVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRN 269
           SVR++AA+KFL+DGDKVKVIVN+KGRENEFRNIAIEL+RRFQ E+GEL TEE+KNFRDRN
Sbjct: 182 SVRMRAARKFLQDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGELGTEESKNFRDRN 241

Query: 270 IFIVLVPNKAVLQKAQE-PPKKKDKPAVNGVSAS 299
           +FIVLVPNK V++K QE PPKKK KPA + VSA+
Sbjct: 242 LFIVLVPNKEVIRKVQEPPPKKKKKPADDKVSAA 273

[Close]
BLAST of Cucsa.090080 vs. TAIR10
Match: AT2G24060.1 (AT2G24060.1 Translation initiation factor 3 protein)

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-79
Identity = 165/278 (59.35%), Postives = 206/278 (74.10%), Query Frame = 1 

Query: 36  SSSTTPFRTSFPSLPISSSNSNAFK-------FRLHKSNSLRLLFSSPVSSPIR----TS 95
           +SST  F   F  +  + S+ + F         RL K+    L F++   SP R    T 
Sbjct: 5   TSSTVGFNAVFTGITKTVSSHSLFSVDSKLCSLRLSKTE---LSFTNLTPSPRRAFAVTC 64

Query: 96  VFARLGGAPRSSGPPDSKRSND---EIGLDISAIKSINVRLIDAEQNMVGVVSKAQAIQM 155
            F   GG  R SG     R  +   +  LDIS+I+S  VRLID +QNM+G+VSK +A++M
Sbjct: 65  RFGGGGGGYRFSGDNRRGRPKEAEIDEALDISSIRSATVRLIDGQQNMLGLVSKDEAVRM 124

Query: 156 AEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID 215
           A+DAELDLV++SPDADPPVV++MDY+KYRYE QK+K+ QQKK+  TRMDLKELKMGYNID
Sbjct: 125 ADDAELDLVILSPDADPPVVKMMDYSKYRYEQQKRKKDQQKKT--TRMDLKELKMGYNID 184

Query: 216 QHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNF 275
           QHDYSVRL+AA+KFL+DGDKVKVIV++KGRENEFRNIAIEL+RRFQ E+GELATEE+KNF
Sbjct: 185 QHDYSVRLRAAQKFLQDGDKVKVIVSMKGRENEFRNIAIELLRRFQTEIGELATEESKNF 244

Query: 276 RDRNIFIVLVPNKAVLQKAQEPP-KKKDKPAVNGVSAS 299
           RDRN+FI+LVPNK +++K QEPP +KK K A N  SAS
Sbjct: 245 RDRNMFIILVPNKEMIRKPQEPPTRKKKKTAENEASAS 277

[Close]
BLAST of Cucsa.090080 vs. TAIR10
Match: AT1G34360.1 (AT1G34360.1 translation initiation factor 3 (IF-3) family protein)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-11
Identity = 60/191 (31.41%), Postives = 96/191 (50.26%), Query Frame = 1 

Query: 100 DSKRSNDEIGLDISAIKSINVRLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPP 159
           D  R N++I  D        VRL+  E + V  VS  +A++ A++ + DLV V  DA PP
Sbjct: 82  DGPRLNEKITGDY-------VRLVSEEGHCV--VSLREALRRAKELQCDLVEVQRDAKPP 141

Query: 160 VVRIMDYNKYRYELQK--KKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLK 219
           V +I+ Y+   Y+  K  K+R + K++ A R D+KE++    I+  D   +   A K ++
Sbjct: 142 VCKIVKYSLELYKKAKVGKERAKAKRAEAIRPDIKEIRFTPKIEAKDLKFKSDQALKLME 201

Query: 220 DGDKVKVI-VNLKGRENEFR-NIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKA 279
            G +VK + V  K +  E      +EL+ RF   +G+ A  E+    DR   +V+V +  
Sbjct: 202 SGYRVKCLAVPDKDKHKELEPEKLLELLFRFTCFIGD-ALVESWPEADRKGAVVIVRHAK 257

Query: 280 VLQKAQEPPKK 287
                  PPKK
Sbjct: 262 F-----GPPKK 257

[Close]
BLAST of Cucsa.090080 vs. NCBI nr
Match: gi|449453964|ref|XP_004144726.1| (PREDICTED: translation initiation factor IF-3, chloroplastic [Cucumis sativus])

HSP 1 Score: 574.3 bits (1479), Expect = 1.2e-160
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 1 

Query: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK 60
           MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK
Sbjct: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK 60

Query: 61  FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINV 120
           FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINV
Sbjct: 61  FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINV 120

Query: 121 RLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQ 180
           RLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQ
Sbjct: 121 RLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQ 180

Query: 181 QKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAI 240
           QKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAI
Sbjct: 181 QKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAI 240

Query: 241 ELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV 300
           ELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV
Sbjct: 241 ELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV 299

[Close]
BLAST of Cucsa.090080 vs. NCBI nr
Match: gi|659069971|ref|XP_008452687.1| (PREDICTED: translation initiation factor IF-3, chloroplastic [Cucumis melo])

HSP 1 Score: 530.4 bits (1365), Expect = 2.0e-147
Identity = 280/300 (93.33%), Postives = 288/300 (96.00%), Query Frame = 1 

Query: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSS-NSNAF 60
           MAGLSGSFPFKSLLSQSSAA+TTTS ++A   PTSSSSTTPFRTS PSLPISSS NSNAF
Sbjct: 1   MAGLSGSFPFKSLLSQSSAASTTTSPAAA---PTSSSSTTPFRTSTPSLPISSSFNSNAF 60

Query: 61  KFRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSIN 120
           K RLHKSNSLRL+FS PVSSPIRTSVFARLGGAPRSSGPPDSKRSNDE GLD+SAI+S N
Sbjct: 61  KLRLHKSNSLRLVFSFPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEFGLDVSAIRSNN 120

Query: 121 VRLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRG 180
           VRLIDA+QNMVGVVSKAQAIQMAEDAELDLVV+SPDADPPVVRIMDYNKYRYELQKKKRG
Sbjct: 121 VRLIDAQQNMVGVVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRG 180

Query: 181 QQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIA 240
           QQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIA
Sbjct: 181 QQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIA 240

Query: 241 IELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV 300
           IELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVN VSA V
Sbjct: 241 IELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNEVSAGV 297

[Close]
BLAST of Cucsa.090080 vs. NCBI nr
Match: gi|255585038|ref|XP_002533227.1| (PREDICTED: translation initiation factor IF-3 [Ricinus communis])

HSP 1 Score: 353.2 bits (905), Expect = 4.4e-94
Identity = 198/301 (65.78%), Postives = 223/301 (74.09%), Query Frame = 1 

Query: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK 60
           MAG++ SFPF  LL+Q + A  TT                          +SS  S  F 
Sbjct: 1   MAGITTSFPFNPLLTQLTTATKTTQ-----------------------FILSSLESKLFG 60

Query: 61  FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSN--DEIGLDISAIKSI 120
            R H S    L+  S  S  + TS  AR GG  RSSG   S++S+  D+  LDIS I+S 
Sbjct: 61  LRFHCSKPDSLISLSRAS--VVTS--ARFGGGFRSSGDRRSRQSDSEDDHALDISTIRSA 120

Query: 121 NVRLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKR 180
            VRLID +QNMVGVV K++AIQMAE+A LDLV++SPDADPPVVRIMDYNKYRYELQKKK+
Sbjct: 121 TVRLIDEQQNMVGVVPKSEAIQMAENAALDLVILSPDADPPVVRIMDYNKYRYELQKKKK 180

Query: 181 GQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNI 240
           GQQKKSAATRMDLKELKMGYNIDQHDY VRL+AA+KFLKDGDKVKVIVNLKGRENEFRNI
Sbjct: 181 GQQKKSAATRMDLKELKMGYNIDQHDYDVRLRAARKFLKDGDKVKVIVNLKGRENEFRNI 240

Query: 241 AIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSAS 300
           AIELIRRFQ +VGELATEE KNFRDRNIFI L PNKA+LQK+QEPPKK+DK AVN VSA 
Sbjct: 241 AIELIRRFQNDVGELATEETKNFRDRNIFITLAPNKAILQKSQEPPKKRDKSAVNEVSAG 274

[Close]
BLAST of Cucsa.090080 vs. NCBI nr
Match: gi|1009109779|ref|XP_015892083.1| (PREDICTED: translation initiation factor IF-3-like [Ziziphus jujuba])

HSP 1 Score: 346.7 bits (888), Expect = 4.2e-92
Identity = 188/269 (69.89%), Postives = 214/269 (79.55%), Query Frame = 1 

Query: 35  SSSSTTPFRTSFPSLPISSS-NSNAFKFRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAP 94
           +S++TTP       LPISSS +S  F  RL  S+  +       SS    ++ +R GG  
Sbjct: 27  TSTNTTP-----SLLPISSSFDSKLFGLRLQNSSLAKSSSLVYASSSFSAAITSRYGGGS 86

Query: 95  RSSGPPDSKR---SNDEIGLDISAIKSINVRLIDAEQNMVGVVSKAQAIQMAEDAELDLV 154
           R SGP    R   S+D+  LDIS I+S +VRLID  QNMVG+VSK++A+++AEDAELDLV
Sbjct: 87  RYSGPDKRSRQSYSDDDQALDISTIRSDSVRLIDENQNMVGIVSKSEAVRIAEDAELDLV 146

Query: 155 VVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLK 214
           ++SPDADPPVV+IMDYNKYRYE QKKKR QQKKSAA+RM LKELKMGYNIDQHDYSVRLK
Sbjct: 147 ILSPDADPPVVKIMDYNKYRYEQQKKKRDQQKKSAASRMALKELKMGYNIDQHDYSVRLK 206

Query: 215 AAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVL 274
           AA+KFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ EVGELATEEAKNFRDRNIFI+L
Sbjct: 207 AARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNEVGELATEEAKNFRDRNIFIIL 266

Query: 275 VPNKAVLQKAQEPPKKKDKPAVNGVSASV 300
           VPN+ VLQK QEPP KKDK AVN VSA V
Sbjct: 267 VPNRTVLQKGQEPPAKKDKSAVNEVSAGV 290

[Close]
BLAST of Cucsa.090080 vs. NCBI nr
Match: gi|224143922|ref|XP_002325123.1| (translation initiation factor 3 family protein [Populus trichocarpa])

HSP 1 Score: 343.2 bits (879), Expect = 4.6e-91
Identity = 193/283 (68.20%), Postives = 221/283 (78.09%), Query Frame = 1 

Query: 19  AAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFKFRLHKSNSLRLLFSSPVS 78
           A  T+ SSSS  P  T +++T   +T+  +L +SS +S  F  RLH  N L    S P S
Sbjct: 2   AGITSASSSSCFPLVTRTTTT---KTTHYALCLSSLDSKLFGLRLHNPN-LSKPDSLPCS 61

Query: 79  SPIRTSVFARLGGAPRS--SGPPDSKRSNDEIGLDISAIKSINVRLIDAEQNMVGVVSKA 138
           SP   +  AR GG PRS  S  P    S+D+  L+IS+I+S  VRLID +QNMVGVV+  
Sbjct: 62  SPSPVTT-ARFGG-PRSYDSRRPRKSDSDDDQALNISSIRSATVRLIDQQQNMVGVVTVR 121

Query: 139 QAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKM 198
            AIQMAED EL+LV+VSPDADPPVVRIMDYNK+RYE QKKKRGQQKKSAA+RMDLKELKM
Sbjct: 122 DAIQMAEDTELNLVIVSPDADPPVVRIMDYNKFRYEQQKKKRGQQKKSAASRMDLKELKM 181

Query: 199 GYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATE 258
           GYNIDQHDY VRL+AA+KFLKDGDKVKVIVNLKGRENEFRN AIEL+RRFQ +VGELATE
Sbjct: 182 GYNIDQHDYDVRLRAARKFLKDGDKVKVIVNLKGRENEFRNNAIELLRRFQNDVGELATE 241

Query: 259 EAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV 300
           E+KNFRDRN FI LVPNKA+LQKAQEPPKKKDK A + VSA V
Sbjct: 242 ESKNFRDRNAFITLVPNKALLQKAQEPPKKKDKSAADEVSAGV 278

The following BLAST results are available for this feature:
BLAST of Cucsa.090080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IF3_MICAN2.6e-3340.91Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) G... [more]
IF3_SYNS31.3e-3245.14Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9311) GN=infC ... [more]
IF3_SYNSC1.7e-3243.86Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9605) GN=infC ... [more]
IF3_CALS42.2e-3242.86Translation initiation factor IF-3 OS=Caldanaerobacter subterraneus subsp. tengc... [more]
IF3_SYNPW2.2e-3243.50Translation initiation factor IF-3 OS=Synechococcus sp. (strain WH7803) GN=infC ... [more]
BLAST of Cucsa.090080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH34_CUCSA8.5e-161100.00Translation initiation factor IF-3 OS=Cucumis sativus GN=Csa_2G036070 PE=3 SV=1[more]
B9T4Q8_RICCO3.1e-9465.78Translation initiation factor IF-3 OS=Ricinus communis GN=RCOM_0443750 PE=3 SV=1[more]
B9IMB4_POPTR3.2e-9168.20Translation initiation factor IF-3 OS=Populus trichocarpa GN=POPTR_0018s11300g P... [more]
A0A067KUU8_JATCU5.5e-9166.90Translation initiation factor IF-3 OS=Jatropha curcas GN=JCGZ_04056 PE=3 SV=1[more]
V4U1W7_9ROSI1.6e-9069.37Translation initiation factor IF-3 OS=Citrus clementina GN=CICLE_v10009165mg PE=... [more]
BLAST of Cucsa.090080 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G30690.13.5e-8171.96 Translation initiation factor 3 protein[more]
AT2G24060.11.1e-7959.35 Translation initiation factor 3 protein[more]
AT1G34360.15.0e-1131.41 translation initiation factor 3 (IF-3) family protein[more]
BLAST of Cucsa.090080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453964|ref|XP_004144726.1|1.2e-160100.00PREDICTED: translation initiation factor IF-3, chloroplastic [Cucumis sativus][more]
gi|659069971|ref|XP_008452687.1|2.0e-14793.33PREDICTED: translation initiation factor IF-3, chloroplastic [Cucumis melo][more]
gi|255585038|ref|XP_002533227.1|4.4e-9465.78PREDICTED: translation initiation factor IF-3 [Ricinus communis][more]
gi|1009109779|ref|XP_015892083.1|4.2e-9269.89PREDICTED: translation initiation factor IF-3-like [Ziziphus jujuba][more]
gi|224143922|ref|XP_002325123.1|4.6e-9168.20translation initiation factor 3 family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001288Translation_initiation_fac_3
IPR019813Translation_initiation_fac3_CS
IPR019814Translation_initiation_fac_3_N
IPR019815Translation_initiation_fac_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.090080.1Cucsa.090080.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001288Translation initiation factor 3HAMAPMF_00080IF_3coord: 92..275
score: 22
IPR001288Translation initiation factor 3PANTHERPTHR10938TRANSLATION INITIATION FACTOR IF-3coord: 99..298
score: 8.0
IPR001288Translation initiation factor 3TIGRFAMsTIGR00168TIGR00168coord: 114..274
score: 3.0
IPR019813Translation initiation factor 3, conserved sitePROSITEPS00938IF3coord: 162..175
scor
IPR019814Translation initiation factor 3, N-terminalGENE3DG3DSA:3.10.20.80coord: 114..182
score: 1.2
IPR019814Translation initiation factor 3, N-terminalPFAMPF05198IF3_Ncoord: 114..178
score: 2.0
IPR019814Translation initiation factor 3, N-terminalunknownSSF54364Translation initiation factor IF3, N-terminal domaincoord: 115..182
score: 2.22
IPR019815Translation initiation factor 3, C-terminalGENE3DG3DSA:3.30.110.10coord: 188..274
score: 1.1
IPR019815Translation initiation factor 3, C-terminalPFAMPF00707IF3_Ccoord: 190..273
score: 2.2
IPR019815Translation initiation factor 3, C-terminalunknownSSF55200Translation initiation factor IF3, C-terminal domaincoord: 189..274
score: 1.44
NoneNo IPR availablePANTHERPTHR10938:SF0TRANSLATION INITIATION FACTOR IF-3, MITOCHONDRIALcoord: 99..298
score: 8.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.090080Cla020022Watermelon (97103) v1cgywmB105
Cucsa.090080Csa2G036070Cucumber (Chinese Long) v2cgycuB096
Cucsa.090080MELO3C004125Melon (DHL92) v3.5.1cgymeB105
Cucsa.090080ClCG02G014380Watermelon (Charleston Gray)cgywcgB103
Cucsa.090080CSPI02G05270Wild cucumber (PI 183967)cgycpiB097
Cucsa.090080CmaCh12G008500Cucurbita maxima (Rimu)cgycmaB0180
Cucsa.090080CmaCh05G010270Cucurbita maxima (Rimu)cgycmaB0184
Cucsa.090080CmoCh05G010410Cucurbita moschata (Rifu)cgycmoB0179
Cucsa.090080CmoCh12G008540Cucurbita moschata (Rifu)cgycmoB0175
Cucsa.090080Lsi11G006930Bottle gourd (USVL1VR-Ls)cgylsiB100
Cucsa.090080Cp4.1LG11g08350Cucurbita pepo (Zucchini)cgycpeB0168
Cucsa.090080Cp4.1LG07g07070Cucurbita pepo (Zucchini)cgycpeB0178
Cucsa.090080MELO3C004125.2Melon (DHL92) v3.6.1cgymedB104
Cucsa.090080CsaV3_2G007620Cucumber (Chinese Long) v3cgycucB097
Cucsa.090080Cla97C02G040140Watermelon (97103) v2cgywmbB100
Cucsa.090080Bhi06G001220Wax gourdcgywgoB114
Cucsa.090080Carg11964Silver-seed gourdcarcgyB0639
Cucsa.090080Carg16428Silver-seed gourdcarcgyB1029
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.090080Cucurbita pepo (Zucchini)cgycpeB0173
Cucsa.090080Cucurbita pepo (Zucchini)cgycpeB0175
Cucsa.090080Melon (DHL92) v3.6.1cgymedB101
Cucsa.090080Silver-seed gourdcarcgyB0151
Cucsa.090080Silver-seed gourdcarcgyB0578
Cucsa.090080Cucumber (Chinese Long) v3cgycucB096
Cucsa.090080Watermelon (97103) v2cgywmbB104
Cucsa.090080Wax gourdcgywgoB119
Cucsa.090080Cucurbita maxima (Rimu)cgycmaB0173
Cucsa.090080Cucurbita maxima (Rimu)cgycmaB0177
Cucsa.090080Cucurbita moschata (Rifu)cgycmoB0169
Cucsa.090080Cucurbita moschata (Rifu)cgycmoB0172
Cucsa.090080Wild cucumber (PI 183967)cgycpiB096
Cucsa.090080Cucumber (Chinese Long) v2cgycuB095
Cucsa.090080Melon (DHL92) v3.5.1cgymeB101
Cucsa.090080Watermelon (Charleston Gray)cgywcgB107
Cucsa.090080Watermelon (97103) v1cgywmB110