Carg16428 (gene) Silver-seed gourd

Overview
NameCarg16428
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranslation initiation factor IF-3
LocationCucurbita_argyrosperma_scaffold_130 : 409785 .. 414159 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCTTCCCACAGCTCAAATCTATGGCTGGGCTCCCCGGCAGATTTCCTTTCAAACCTCTCTTATCCCATTCCTCCGCCGCGCCCACCACCTCTGCCGCCGCGCCCTCCTCCTCCGCCACCGCCACTCCCATCCGGACCTCAATTTCCCCTCTCCCCCTCTCCTCCTCCTCTAAGTCCAATGCCTTCAGATTCCGCCTTCACAACTCCAATTCTCTGCATCTCCTCTTCACAACTTCAACTCGTAGTACTGTACTTGCTCAATACGGCGGTGTTTCTCGGTCTTCAGGACCGGCGGATTCTAAGCGCTCTGACGATGGTCTTGGTGTCGATATTTCCGCCATTAGGTGTGTGTGCCTTATGCTTGCTAGATTTACATGTATGATGGACGAGTTTTGTTCATTATCATTATTATTTATTTATGATTATTTGGATTTCTTATTTGTATGGTTGATTTGTTTAGATCGAATACTGTGAGGCTTATCGATGCACAACAGAACATGGTAGGTGGTTTGTTTGAAGCAATTTTCTGTTTGTTTCCTTTTGCGACATTGCAACACATGTAATTTAGGCGTCGTAGTTTGGAATTTTGACCTTCTTGAAATGAACAAATAGGTTGGAATCGTGTCGAAGGCTCAGGCCATTCAAATGGCTGATGACGCTGAACTTGATTTGGTAGGTCTTCTTGTACCGTTTGTTGATAAAGCAATTTTCTATAATTTGTCTTGGAATTCCAAAGAACCTTGCCCCAAACGTTAATGTTCTTCTGAGGACTAATTGCATAGTTGGCCTTAAGTCGAAACTAATTGGCGGGCTTGAGGAATAGTCGAAGTCATACCCAATCGAAAGCACGAAATTTAAAATGGTCCTTTTAGCTTAAGCTTGATGTTCATCTTAAATCTTAATTCATTTTTTCACTTTATGTTTATTTATTGCCTCTTGGGTTTTGGTTTTTATCTTCAATAAACTGTTCTCTGTATAAACATGAGCATAAAATTGAAAGCTTATGATGATAGTAATCGAAAAATTATAGTTATATGTTATAGTATGTCCTCTAAACTATAAGAATCATCGCATGGTGAATGAATTTCATTTCTGGGTTGTGCATTAGGTCAATTTTACTATATAAAATTGTTGTAACGACCCAGACCCACCGCTAACAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACACGTTTGCTAGGGAAAGGTTTCCACGCCCTTAGAAGGGTGTTTTGTTCTCCTCCCCAACCAATGTGGGATTTCACAATCCACCCCCTTCAGGACCCAGCATCATCGCTGGCACTCGTTCCTTTCTCCGATTGATGTGGAACCCCCACCAAATCCACCCCCCTTTGGGGCCCAGGACACCACCTCGTGTCTACTCCCCTTCGGGGAACAACCTCCTCGCTGGCACATCACCCGGTGCTTGGCTCTGATACCATTTGTAATGGCCAGGCCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGTTTCCCTTCAAGGCTTTAAAACACGTCTGCTAGGGAAAGGTTTCCACACCCTTTATTTCGTTCTCTTCCCCAATCAATGTGGGGTATCACAATTATACTTTCCTTCCCATATGGTATAGACCGGCAAAGAAACGTCTATTTGTCGACACAAGACTTGGATGAATGCTGAGTGATGCATTGTTATTAAGATACATGAGAAAAACTTCATTTGACCTGCGAGTTCATAACATAATACTCTTCCAGCAATCAACAATTTATGAATCTCATTTCACTATTTGTGTATTGTTCACCTTTTAACTTGGATAAAGAAGGTCGTGGACTAATATTTTTTTTTTTACTGGAATCTAGATACTTGTGTGTTCTTTGTGTAGGATTTAGCCAATTCTTTCTATTTCATGCAGGTTGTATTATCACCTGATGCAGATCCTCCAGTTGTCAGAATAATGGATTACAGGCATGCCATTTTCTTTCTCTGATCTCCCAATTCCCTTTATTATCGGAAAAGGTTGTATTTGCTCAAGTCCAGTGCCAATCTTATGAACATTAATGAGTTTACCAATACTTATCAAAAACTTTTTGTGGTGATTTATTTTTCAGTTAGTACTTTAATTTTAATTAAATGGTTACGAAAAAGTAATGTATAACAAATGCTAAGTAGATGGAAATGTTGTACATTAGAATGGAGAAGGAATGAAACTATGGGAGAATTAAAAGGCCACATTGTTTTTCGTTGTTAATTAACTTCAAATGAACATATGATGATTGTTATCTTTATACTGGGAGAATTAACTTTAAGTTCTTGTTACTTTGACGTTGAGATTTTTTTTTTTTTTTCGGTCTCGTTTCTCAGTAAATATAGGTATGAACAGCAAAAGAAGAAAAGGGGACAACAGAAGAAAAGTGCTGGTGAATCTCTTTCTTAATATACTCTGCATATTCTCTTTGGTTCACAATCTTTCAGGTTTGAGGAAAGATACTGACAAAGTGTTGTTTTGAATGTTAGCTACTCGCATGGATTTAAAAGAGCTTAAAATGGGGTAACACATTCCTTCATTGCCTTTTCTTTTTGGAGGTCATCTTTCTTTTCTTTTTCCTTCTGTCTAAAGCAACTCGAACTTTTGACTTCTAAGATCGATAAATAACCTACAAAGAAAAGAGCTATGAGCGGCTTTTGTTCGCTATATCGAAAAAAATTCTGCGAGTATCGTCTTCCCAGTCTGAACCTTCTGGTTGCTATTATTATTGCACAGTTACAACATCGACCAACATGATTACTCTGTCCGTTTGAAAGCTGCAAGGAAGTTTTTGAAAGATGGAGATAAGGTTTCTTTTCTAATCTACCATATCTTTGATTGTCTGTGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCATGGCTTTGCTTTGGGCTTCCCTAAAAGGTCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATGTTCCACTAAATTAACCAATGTGGGACTCACTCTCAGTAATCCTCAACAATCCTCCCCTCGAACAAAGTACACTATAAGCCTCCCCTGAGGCTTATGGAGCTCTCGAATAGCCTCCTCTTAAATCGAGGCTCGATTCGTTTCTTTGGAGCCCTCGAACAAAGTACACCCTTTGTTCGACACTTTAGTCACTTTTGATTATACCTTCGAGGCTCATAGTTCTTTGATCAACATTTGAGGATTCTATTGACATGGTTAACTTTAGGGCATGACTCTGATACCATGTGTTAGGAATCACGACTCTCCACAATTGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAACGTGGGACTCACTCTCAATAATCCTCAACAGTCTGTTCATGCATTCAAGTAGATTGTTTCAGTTCGTCGAATATTGTTTCAGTTTGTCTGAATCACTTTGAAATCTTTTAACAAAATGTTATAGGTTAAAGTTATAGTGAACTTGAAAGGTCGTGAGAATGCGTTCAAGAACATAGCAATTGAGCTCATCAGACGTTTTCAGGAAGAGATTGGGGAGGTATTCATTTTCTGTCAATTTTGTGCCACCTCTGTCAATTGTCCATCACTGTGGTATTGTTACTCAATAAGATGCTCCAAATTATTTTAAGTGAAATTTTAAAGGGTAAATTTAGGCACGTGTTTGAACGATATTAAGTCTGATATCATCACCTCATGGAGCACGTTTCGTAGCTCCGGGTAGACTGTTCTTGCAAACAGCTTTTGAAAACTGTTTAATATAACCGTTCTCCGGCTGTGAGATGTCAGCTTAAGCATCCTAGTCTCACGAGGCACTCTACCTAACTCTGTAATATTTTGGTTGATAGTATATGTCTTAACCAATTGAGTTACTCACGTTAGCCCTCAACAATTTATAATATGTAATATTTTAATATCTTAGATAGGTGGCTATAATATATATATATATTTCATTTCAAGTTCTACTAATCTATCTCATTTATATTCCTAATGTGAATTTGATGCCATATTTGTGCTTCTTGTTAATACTTCAAACAAACACAATATATCTTGTGTTTATGTCTGATCCAATGACCTGCTCAATATTTTTATTATACACAGCTTGCAACTGAAGAGGCCAAGAACTTAAGAGACAGGAATATGTTCATTGTTCTAGCTCCTAACAAGGCTGTTCTACAGAAGGCTCAAGAACCCCCCAAGGTAAAAGACAACCTTGTAGTTAATGAAGTTTCTGCCAGTGTTTAA

mRNA sequence

TCCCTTCCCACAGCTCAAATCTATGGCTGGGCTCCCCGGCAGATTTCCTTTCAAACCTCTCTTATCCCATTCCTCCGCCGCGCCCACCACCTCTGCCGCCGCGCCCTCCTCCTCCGCCACCGCCACTCCCATCCGGACCTCAATTTCCCCTCTCCCCCTCTCCTCCTCCTCTAAGTCCAATGCCTTCAGATTCCGCCTTCACAACTCCAATTCTCTGCATCTCCTCTTCACAACTTCAACTCGTAGTACTGTACTTGCTCAATACGGCGGTGTTTCTCGGTCTTCAGGACCGGCGGATTCTAAGCGCTCTGACGATGGTCTTGGTGTCGATATTTCCGCCATTAGATCGAATACTGTGAGGCTTATCGATGCACAACAGAACATGGTTGGAATCGTGTCGAAGGCTCAGGCCATTCAAATGGCTGATGACGCTGAACTTGATTTGGTTGTATTATCACCTGATGCAGATCCTCCAGTTCTTGCAACTGAAGAGGCCAAGAACTTAAGAGACAGGAATATGTTCATTGTTCTAGCTCCTAACAAGGCTGTTCTACAGAAGGCTCAAGAACCCCCCAAGGTAAAAGACAACCTTGTAGTTAATGAAGTTTCTGCCAGTGTTTAA

Coding sequence (CDS)

ATGGCTGGGCTCCCCGGCAGATTTCCTTTCAAACCTCTCTTATCCCATTCCTCCGCCGCGCCCACCACCTCTGCCGCCGCGCCCTCCTCCTCCGCCACCGCCACTCCCATCCGGACCTCAATTTCCCCTCTCCCCCTCTCCTCCTCCTCTAAGTCCAATGCCTTCAGATTCCGCCTTCACAACTCCAATTCTCTGCATCTCCTCTTCACAACTTCAACTCGTAGTACTGTACTTGCTCAATACGGCGGTGTTTCTCGGTCTTCAGGACCGGCGGATTCTAAGCGCTCTGACGATGGTCTTGGTGTCGATATTTCCGCCATTAGATCGAATACTGTGAGGCTTATCGATGCACAACAGAACATGGTTGGAATCGTGTCGAAGGCTCAGGCCATTCAAATGGCTGATGACGCTGAACTTGATTTGGTTGTATTATCACCTGATGCAGATCCTCCAGTTCTTGCAACTGAAGAGGCCAAGAACTTAAGAGACAGGAATATGTTCATTGTTCTAGCTCCTAACAAGGCTGTTCTACAGAAGGCTCAAGAACCCCCCAAGGTAAAAGACAACCTTGTAGTTAATGAAGTTTCTGCCAGTGTTTAA

Protein sequence

MAGLPGRFPFKPLLSHSSAAPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVLAQYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVLATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
Homology
[Close]
BLAST of Carg16428 vs. NCBI nr
Match: XP_022969585.1 (translation initiation factor IF3-4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 3.5e-51
Identity = 189/292 (64.73%), Postives = 191/292 (65.41%), Query Frame = 0 

Query: 1   MAGLPGRFPFKPLLSHSSAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAGL GRFPFKPLLSHSSA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAGLTGRFPFKPLLSHSSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXL-FTTSTRSTVLAQYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQ 120
           XXXXX  L FTTSTRSTV++QYGG SRSSGPADSKR DDGLGVDISAIRSNTVRLIDAQQ
Sbjct: 61  XXXXXLHLVFTTSTRSTVVSQYGGASRSSGPADSKRFDDGLGVDISAIRSNTVRLIDAQQ 120

Query: 121 NMVGIVSKAQAIQMADDAELDLVVLSPDADPPV--------------------------- 180
           NMVGIVSK QAIQMADDAELDLVVLSPDADPPV                           
Sbjct: 121 NMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQXXXXXXXXXXXAAT 180

Query: 181 ------------------------------------------------------------ 200
                                                                       
Sbjct: 181 RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQ 240

[Close]
BLAST of Carg16428 vs. NCBI nr
Match: XP_022937979.1 (translation initiation factor IF3-4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 208.8 bits (530), Expect = 1.7e-50
Identity = 189/291 (64.95%), Postives = 190/291 (65.29%), Query Frame = 0 

Query: 1   MAGLPGRFPFKPLLSHSSAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAGL  RFPFKPLLSHSS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAGLTARFPFKPLLSHSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXLFTTSTRSTVLAQYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQN 120
           XXXXXXX FTTSTRSTV+AQYGG SR SGPADSKR DDGLGVDISAIRSNTVRLIDAQQN
Sbjct: 61  XXXXXXXXFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGLGVDISAIRSNTVRLIDAQQN 120

Query: 121 MVGIVSKAQAIQMADDAELDLVVLSPDADPPV---------------------------- 180
           MVGIVSKAQAIQMADDAELDLVVLSPDADPPV                            
Sbjct: 121 MVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQXXXXXXXXXXXAATR 180

Query: 181 ------------------------------------------------------------ 200
                                                                       
Sbjct: 181 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQE 240

[Close]
BLAST of Carg16428 vs. NCBI nr
Match: XP_023536766.1 (translation initiation factor IF3-4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.8 bits (512), Expect = 2.1e-48
Identity = 188/291 (64.60%), Postives = 189/291 (64.95%), Query Frame = 0 

Query: 1   MAGLPGRFPFKPLLSHSSAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAGL GRFPFKPLLSHSS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAGLTGRFPFKPLLSHSS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXLFTTSTRSTVLAQYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQN 120
           XXXXXXX   TSTRSTV+AQYGG SR SGPADSKR DDGLGVDISAIRSNTVRLIDAQQN
Sbjct: 61  XXXXXXXXXXTSTRSTVVAQYGGGSRPSGPADSKRFDDGLGVDISAIRSNTVRLIDAQQN 120

Query: 121 MVGIVSKAQAIQMADDAELDLVVLSPDADPPV---------------------------- 180
           MVGIVSKAQAIQMADDAELDLVVLSPDADPPV                            
Sbjct: 121 MVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQXXXXXXXXXXXAATR 180

Query: 181 ------------------------------------------------------------ 200
                                                                       
Sbjct: 181 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQE 240

[Close]
BLAST of Carg16428 vs. NCBI nr
Match: XP_022158178.1 (translation initiation factor IF3-4, chloroplastic [Momordica charantia] >XP_022158179.1 translation initiation factor IF3-4, chloroplastic [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 7.6e-38
Identity = 134/291 (46.05%), Postives = 145/291 (49.83%), Query Frame = 0 

Query: 1   MAGLPGRFPFKPLLSHSSAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAGL  RFPFKPLLS      XXXXXXXXXXXXXXXX                       
Sbjct: 1   MAGLTSRFPFKPLLSXXXXXXXXXXXXXXXXXXXXXXFRTSISPLPLSSSESNAFGFRLH 60

Query: 61  XXXXXXXLFTTSTRSTVLAQYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQN 120
                  + ++  R +V A++GG  RSSGPADSKRSDD  G+D+SAIRSN VRLIDAQQN
Sbjct: 61  NSNSLRLIVSSPIRRSVFARFGGAPRSSGPADSKRSDDDFGLDVSAIRSNNVRLIDAQQN 120

Query: 121 MVGIVSKAQAIQMADDAELDLVVLSPDADPPV---------------------------- 180
           MVGIVSKAQAIQMA+DAELDLVVLSPDADPPV                            
Sbjct: 121 MVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATR 180

Query: 181 ------------------------------------------------------------ 200
                                                                       
Sbjct: 181 MDLKELKMGYNIDQHDYSVRLKAARRFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQD 240

[Close]
BLAST of Carg16428 vs. NCBI nr
Match: XP_008452687.1 (PREDICTED: translation initiation factor IF-3 [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 5.1e-34
Identity = 102/218 (46.79%), Postives = 111/218 (50.92%), Query Frame = 0 

Query: 74  RSTVLAQYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQM 133
           R++V A+ GG  RSSGP DSKRS+D  G+D+SAIRSN VRLIDAQQNMVG+VSKAQAIQM
Sbjct: 80  RTSVFARLGGAPRSSGPPDSKRSNDEFGLDVSAIRSNNVRLIDAQQNMVGVVSKAQAIQM 139

Query: 134 ADDAELDLVVLSPDADPPV----------------------------------------- 193
           A+DAELDLVVLSPDADPPV                                         
Sbjct: 140 AEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID 199

Query: 194 ---------------------------------------------------LATEEAKNL 200
                                                              LATEEAKN 
Sbjct: 200 QHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNF 259

[Close]
BLAST of Carg16428 vs. TAIR10
Match: AT2G24060.1 (Translation initiation factor 3 protein)

HSP 1 Score: 91.7 bits (226), Expect = 5.6e-19
Identity = 67/198 (33.84%), Postives = 87/198 (43.94%), Query Frame = 0 

Query: 80  QYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAEL 139
           ++ G +R   P +++  +    +DIS+IRS TVRLID QQNM+G+VSK +A++MADDAEL
Sbjct: 71  RFSGDNRRGRPKEAEIDE---ALDISSIRSATVRLIDGQQNMLGLVSKDEAVRMADDAEL 130

Query: 140 DLVVLSPDADPPV----------------------------------------------- 188
           DLV+LSPDADPPV                                               
Sbjct: 131 DLVILSPDADPPVVKMMDYSKYRYEQQXXXXXXXXXTTRMDLKELKMGYNIDQHDYSVRL 190

[Close]
BLAST of Carg16428 vs. TAIR10
Match: AT4G30690.1 (Translation initiation factor 3 protein)

HSP 1 Score: 79.0 bits (193), Expect = 3.8e-15
Identity = 39/52 (75.00%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 102 VDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVL 154
           +DISAIRS TVRLID QQNM+G+VSK +A++ A+DAELDLV+LSPDADPPV+
Sbjct: 86  LDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAELDLVILSPDADPPVV 137


HSP 2 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 0 

Query: 153 LATEEAKNLRDRNMFIVLAPNKAVLQK 180
           L TEE+KN RDRN+FIVL PNK V++K
Sbjct: 227 LGTEESKNFRDRNLFIVLVPNKEVIRK 253

[Close]
BLAST of Carg16428 vs. Swiss-Prot
Match: sp|O82234|IF32_ARATH (Translation initiation factor IF3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IF3-2 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-17
Identity = 67/198 (33.84%), Postives = 87/198 (43.94%), Query Frame = 0 

Query: 80  QYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAEL 139
           ++ G +R   P +++  +    +DIS+IRS TVRLID QQNM+G+VSK +A++MADDAEL
Sbjct: 71  RFSGDNRRGRPKEAEIDE---ALDISSIRSATVRLIDGQQNMLGLVSKDEAVRMADDAEL 130

Query: 140 DLVVLSPDADPPV----------------------------------------------- 188
           DLV+LSPDADPPV                                               
Sbjct: 131 DLVILSPDADPPVVKMMDYSKYRYEQQXXXXXXXXXTTRMDLKELKMGYNIDQHDYSVRL 190

[Close]
BLAST of Carg16428 vs. Swiss-Prot
Match: sp|Q94B52|IF34_ARATH (Translation initiation factor IF3-4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IF3-4 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.8e-14
Identity = 39/52 (75.00%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 102 VDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVL 154
           +DISAIRS TVRLID QQNM+G+VSK +A++ A+DAELDLV+LSPDADPPV+
Sbjct: 86  LDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAELDLVILSPDADPPVV 137


HSP 2 Score: 43.9 bits (102), Expect = 2.4e-03
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 0 

Query: 153 LATEEAKNLRDRNMFIVLAPNKAVLQK 180
           L TEE+KN RDRN+FIVL PNK V++K
Sbjct: 227 LGTEESKNFRDRNLFIVLVPNKEVIRK 253

[Close]
BLAST of Carg16428 vs. Swiss-Prot
Match: sp|Q9CN42|IF3_PASMU (Translation initiation factor IF-3 OS=Pasteurella multocida (strain Pm70) OX=272843 GN=infC PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-05
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 107 IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPV 153
           IR   VRLID      GIVS  QA++MA+ AELDLV +SP+A+PPV
Sbjct: 20  IRVKEVRLIDQDGEQAGIVSIQQALEMAEQAELDLVEISPNAEPPV 65

[Close]
BLAST of Carg16428 vs. Swiss-Prot
Match: sp|Q74IC4|IF3_LACJO (Translation initiation factor IF-3 OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) OX=257314 GN=infC PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.4e-05
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 107 IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPV 153
           IR+  VRLI      VG+VSK +A++ A DA+LDLV+LSP+A PPV
Sbjct: 7   IRAREVRLIGVDGQQVGVVSKNEALRKAADADLDLVLLSPNAKPPV 52

[Close]
BLAST of Carg16428 vs. Swiss-Prot
Match: sp|Q8XJ67|IF3_CLOPE (Translation initiation factor IF-3 OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=infC PE=3 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 107 IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPV 153
           IR   VRLI +    +G+VS   A +MAD+AELDLV++SP+A PPV
Sbjct: 18  IREKEVRLISSTGEQLGVVSGRDAQRMADEAELDLVMISPNAKPPV 63

[Close]
BLAST of Carg16428 vs. TrEMBL
Match: tr|A0A1S3BV82|A0A1S3BV82_CUCME (Translation initiation factor IF-3 OS=Cucumis melo OX=3656 GN=LOC103493630 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.4e-34
Identity = 102/218 (46.79%), Postives = 111/218 (50.92%), Query Frame = 0 

Query: 74  RSTVLAQYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQM 133
           R++V A+ GG  RSSGP DSKRS+D  G+D+SAIRSN VRLIDAQQNMVG+VSKAQAIQM
Sbjct: 80  RTSVFARLGGAPRSSGPPDSKRSNDEFGLDVSAIRSNNVRLIDAQQNMVGVVSKAQAIQM 139

Query: 134 ADDAELDLVVLSPDADPPV----------------------------------------- 193
           A+DAELDLVVLSPDADPPV                                         
Sbjct: 140 AEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID 199

Query: 194 ---------------------------------------------------LATEEAKNL 200
                                                              LATEEAKN 
Sbjct: 200 QHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNF 259

[Close]
BLAST of Carg16428 vs. TrEMBL
Match: tr|A0A0A0LH34|A0A0A0LH34_CUCSA (Translation initiation factor IF-3 OS=Cucumis sativus OX=3659 GN=Csa_2G036070 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.1e-32
Identity = 99/218 (45.41%), Postives = 111/218 (50.92%), Query Frame = 0 

Query: 74  RSTVLAQYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQM 133
           R++V A+ GG  RSSGP DSKRS+D +G+DISAI+S  VRLIDA+QNMVG+VSKAQAIQM
Sbjct: 82  RTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINVRLIDAEQNMVGVVSKAQAIQM 141

Query: 134 ADDAELDLVVLSPDADPPV----------------------------------------- 193
           A+DAELDLVV+SPDADPPV                                         
Sbjct: 142 AEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID 201

Query: 194 ---------------------------------------------------LATEEAKNL 200
                                                              LATEEAKN 
Sbjct: 202 QHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNF 261

[Close]
BLAST of Carg16428 vs. TrEMBL
Match: tr|A0A061GWG8|A0A061GWG8_THECC (Translation initiation factor IF-3 OS=Theobroma cacao OX=3641 GN=TCM_038405 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.4e-26
Identity = 86/215 (40.00%), Postives = 104/215 (48.37%), Query Frame = 0 

Query: 75  STVLAQYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMA 134
           + + A+YGG SR SGP  S+R+D+   +DIS IRS++VRLID QQNMVGIVSK+QA++MA
Sbjct: 54  AAITARYGGDSRFSGPGRSRRNDEDQALDISGIRSDSVRLIDEQQNMVGIVSKSQAVEMA 113

Query: 135 DDAELDLVVLSPDADPPV------------------------------------------ 194
           +DAELDLV+LSPDADPPV                                          
Sbjct: 114 EDAELDLVILSPDADPPVVRIMDYNKYKYEQXXXXXXXXXXTNRMDLKELKMGYNIDQHD 173

Query: 195 ------------------------------------------------LATEEAKNLRDR 200
                                                           LA EE+KN RDR
Sbjct: 174 YSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNMAMELIRRFQNDVGELAAEESKNFRDR 233

[Close]
BLAST of Carg16428 vs. TrEMBL
Match: tr|A0A061GNM3|A0A061GNM3_THECC (Translation initiation factor IF-3 OS=Theobroma cacao OX=3641 GN=TCM_038405 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.4e-26
Identity = 86/216 (39.81%), Postives = 104/216 (48.15%), Query Frame = 0 

Query: 75  STVLAQYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMA 134
           + + A+YGG SR SGP  S+R+D+   +DIS IRS++VRLID QQNMVGIVSK+QA++MA
Sbjct: 54  AAITARYGGDSRFSGPGRSRRNDEDQALDISGIRSDSVRLIDEQQNMVGIVSKSQAVEMA 113

Query: 135 DDAELDLVVLSPDADPPV------------------------------------------ 194
           +DAELDLV+LSPDADPPV                                          
Sbjct: 114 EDAELDLVILSPDADPPVVRIMDYNKYKYEQXXXXXXXXXXTNRMDLKELKMGYNIDQHD 173

Query: 195 -------------------------------------------------LATEEAKNLRD 200
                                                            LA EE+KN RD
Sbjct: 174 YSVRLKAARKFLKDGDKVVKVIVNLKGRENEFRNMAMELIRRFQNDVGELAAEESKNFRD 233

[Close]
BLAST of Carg16428 vs. TrEMBL
Match: tr|A0A2P5WXE2|A0A2P5WXE2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA24904 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.8e-26
Identity = 83/188 (44.15%), Postives = 104/188 (55.32%), Query Frame = 0 

Query: 75  STVLAQYGGVSRSSGPADSKRSDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMA 134
           +T+ A+YG  SR S P  SK++D+   +D+SAIRS++VRLID +Q+M+GIVSK+QAIQMA
Sbjct: 51  ATINARYGADSRFSPPGRSKKNDEDQALDLSAIRSDSVRLIDEEQSMIGIVSKSQAIQMA 110

Query: 135 DDAELDLVVLSPDADPPV------------------------------------------ 194
           +DA LDLV+LSPDADPPV                                          
Sbjct: 111 EDAGLDLVILSPDADPPVVRIMDYNYNIDQHDYSVRLKAARKFLNDGDKVKVIVNLKGRE 170

Query: 195 --------------------LATEEAKNLRDRNMFIVLAPNKAVLQKAQEPP-KVKDNLV 200
                               LATEE+KN +DRN+FIVL PNKAV+QKAQ+ P K KD   
Sbjct: 171 NEFRNMAMELIRRFQNDVGELATEESKNFKDRNIFIVLVPNKAVVQKAQQDPGKKKDKPT 230

The following BLAST results are available for this feature:
BLAST of Carg16428 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022969585.13.5e-5164.73translation initiation factor IF3-4, chloroplastic-like [Cucurbita maxima][more]
XP_022937979.11.7e-5064.95translation initiation factor IF3-4, chloroplastic-like [Cucurbita moschata][more]
XP_023536766.12.1e-4864.60translation initiation factor IF3-4, chloroplastic-like [Cucurbita pepo subsp. p... [more]
XP_022158178.17.6e-3846.05translation initiation factor IF3-4, chloroplastic [Momordica charantia] >XP_022... [more]
XP_008452687.15.1e-3446.79PREDICTED: translation initiation factor IF-3 [Cucumis melo][more]
BLAST of Carg16428 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G24060.15.6e-1933.84Translation initiation factor 3 protein[more]
AT4G30690.13.8e-1575.00Translation initiation factor 3 protein[more]
BLAST of Carg16428 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O82234|IF32_ARATH1.0e-1733.84Translation initiation factor IF3-2, chloroplastic OS=Arabidopsis thaliana OX=37... [more]
sp|Q94B52|IF34_ARATH6.8e-1475.00Translation initiation factor IF3-4, chloroplastic OS=Arabidopsis thaliana OX=37... [more]
sp|Q9CN42|IF3_PASMU2.0e-0558.70Translation initiation factor IF-3 OS=Pasteurella multocida (strain Pm70) OX=272... [more]
sp|Q74IC4|IF3_LACJO3.4e-0556.52Translation initiation factor IF-3 OS=Lactobacillus johnsonii (strain CNCM I-122... [more]
sp|Q8XJ67|IF3_CLOPE1.3e-0454.35Translation initiation factor IF-3 OS=Clostridium perfringens (strain 13 / Type ... [more]
BLAST of Carg16428 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BV82|A0A1S3BV82_CUCME3.4e-3446.79Translation initiation factor IF-3 OS=Cucumis melo OX=3656 GN=LOC103493630 PE=3 ... [more]
tr|A0A0A0LH34|A0A0A0LH34_CUCSA4.1e-3245.41Translation initiation factor IF-3 OS=Cucumis sativus OX=3659 GN=Csa_2G036070 PE... [more]
tr|A0A061GWG8|A0A061GWG8_THECC3.4e-2640.00Translation initiation factor IF-3 OS=Theobroma cacao OX=3641 GN=TCM_038405 PE=3... [more]
tr|A0A061GNM3|A0A061GNM3_THECC4.4e-2639.81Translation initiation factor IF-3 OS=Theobroma cacao OX=3641 GN=TCM_038405 PE=3... [more]
tr|A0A2P5WXE2|A0A2P5WXE2_GOSBA5.8e-2644.15Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA24904 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
Vocabulary: INTERPRO
TermDefinition
IPR001288Translation_initiation_fac_3
IPR019814Translation_initiation_fac_3_N
IPR036787T_IF-3_N_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16428-RACarg16428-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036787Translation initiation factor 3 (IF-3), N-terminal domain superfamilyGENE3DG3DSA:3.10.20.80coord: 105..159
e-value: 1.7E-13
score: 52.3
IPR036787Translation initiation factor 3 (IF-3), N-terminal domain superfamilySUPERFAMILYSSF54364Translation initiation factor IF3, N-terminal domaincoord: 106..153
IPR019814Translation initiation factor 3, N-terminalPFAMPF05198IF3_Ncoord: 106..152
e-value: 1.6E-13
score: 50.6
IPR001288Translation initiation factor 3PANTHERPTHR10938TRANSLATION INITIATION FACTOR IF-3coord: 74..152
NoneNo IPR availablePANTHERPTHR10938:SF0TRANSLATION INITIATION FACTOR IF-3, MITOCHONDRIALcoord: 74..152

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16428Cla020022Watermelon (97103) v1carwmB0913
Carg16428Csa2G036070Cucumber (Chinese Long) v2carcuB0929
Carg16428MELO3C004125Melon (DHL92) v3.5.1carmeB0900
Carg16428ClCG02G014380Watermelon (Charleston Gray)carwcgB0889
Carg16428CSPI02G05270Wild cucumber (PI 183967)carcpiB0952
Carg16428Cucsa.090080Cucumber (Gy14) v1carcgyB1029
Carg16428CmaCh05G010270Cucurbita maxima (Rimu)carcmaB1255
Carg16428CmaCh12G008500Cucurbita maxima (Rimu)carcmaB1254
Carg16428CmoCh12G008540Cucurbita moschata (Rifu)carcmoB1223
Carg16428CmoCh05G010410Cucurbita moschata (Rifu)carcmoB1224
Carg16428Lsi11G006930Bottle gourd (USVL1VR-Ls)carlsiB829
Carg16428Cp4.1LG07g07070Cucurbita pepo (Zucchini)carcpeB1263
Carg16428Cp4.1LG11g08350Cucurbita pepo (Zucchini)carcpeB1260
Carg16428MELO3C004125.2Melon (DHL92) v3.6.1carmedB0908
Carg16428CsaV3_2G007620Cucumber (Chinese Long) v3carcucB0952
Carg16428Cla97C02G040140Watermelon (97103) v2carwmbB0955
Carg16428Bhi06G001220Wax gourdcarwgoB1054
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg16428Carg11964Silver-seed gourdcarcarB523
The following block(s) are covering this gene:
GeneOrganismBlock
Carg16428Silver-seed gourdcarcarB493
Carg16428Cucumber (Gy14) v2carcgybB0901
Carg16428Cucumber (Gy14) v2carcgybB0902
Carg16428Cucurbita maxima (Rimu)carcmaB1253
Carg16428Wild cucumber (PI 183967)carcpiB0951
Carg16428Cucumber (Chinese Long) v3carcucB0951
Carg16428Melon (DHL92) v3.5.1carmeB0898
Carg16428Melon (DHL92) v3.6.1carmedB0907
Carg16428Watermelon (Charleston Gray)carwcgB0892
Carg16428Watermelon (97103) v1carwmB0912
Carg16428Watermelon (97103) v1carwmB0915
Carg16428Watermelon (97103) v2carwmbB0959