CmoCh05G010410 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G010410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Translation initiation factor IF-3
Location	Cmo_Chr05 : 8429131 .. 8434276 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAAATTCACACCCTCCACTGCTCCCTTCCTCAGCTCAAACCTCTATGGCTGGGCTCTCCGGCCGCTTCCCTTTCAAATCTATCTCATCTCAATCCTCCGCCACCGCCACAGCCACCACCACCACCTCCTCCTCCTCCTCCGCCACTCCCTTTCGAACCTCAATTTTCCCTCTACCCCTCCCCTCCTCCAAATCCAATGCCTTCAGATTCCGCCTTCACAACTCCAACTCTCTGCGTCTCGTTTCCTCTCCAATTCGTACTTCTGTATTTGCTCGATACGGCGGCGCTCCTCGATCTTCAGGACCGGCGGGTTCTAAGCGCTCTGAAGATTCTCTTGCTCTCGATGTTTCCTCCATCAGGTTTGTGCCTTATACATGCAAGAGTTACATGACGAATGAATTTTGTTTTTGATTCCGAGTTCTTGTTTGTTTTATTGCGTTTTTTTGTGAGTGATTTGTATAGGTCGAATAATGTGAGGCTTATCGATGAACAGCAGAATATGGTAGGTGTTTTGTTCCGCCTGAATAGCTTTTGCTTGGGGAAAGGCAATTTTTGTCTATCTTCCTGTTTCCATTTACAACATTTCGAAACTTGTATGCGAGGCGCCTTAGTTTGGAAATTTAATCTTCTTGAAATGAATAGGTTGGAATTGTGCCAAAGTCCCAGGCGATTCAAATGGCTGAGGATGCCGAACTCGATTTGGTACGTCGTCTTGTACCGTGTGTTGTTAAAATAATTGTTTGTCTATGAATTCCAAAGAAACCTTGATCCAAACTTTAATGCTATGCGGGGACAAAATGTTGAAATATCATCATTAGCCTGATACGGTCAAGATACCTAAATATTTTAGGAAAAAGATTTAGATATTTTAGGAATAGATTGTATAGCTTTTAGTATAAATACCCTTCCGCTCTATTCCCAAGAAATACAAATCACAGAGTGCAGCAATAGTTTCTACCGAGTGTCTTGTAATCTCTTCTCGATTGGTGTTAATAAATTGATGTTAATAAAGTGTGCGAGTGTTTCCTACAAAAAGCTATGTTCAACACAAAATACATAGCTCATATTTCTTTTGAAACTATGAAATCGAGAATGTGCTTTTTAGCTTCAGGTTGATGTTGATCTTAAATCTTAATTCCTTTTTCACTCTCTGCTTGTTTATTGCCACTTGGGCTTTGGTTTATCTTCAATAAACTGGTCTCGATATAAAACTGAGCATGGGATCAAAAGCTTATGGTAATTATAACTGAAAATTGTAGTTCTAAGTTATAGCAGTTCATCCATAACTAGAAGAATCATCGCATGGTGAATGTTTTTCATTTCAGAGTTGTGTATTAGGCCAACTTTACTGTTTGCTCCGATTTAAAATTGTAATTTCTTTCCATATGGGCGTAAACCGGCAACGAAACTTCTATCTGTCAACACAAGACTTGAAACTTTCTCAGCAATCAGCATTTTAGTTGTCTGCATACTCAAGTTTGGCTGATGCAATTTACGAACCCGTCTCACAGTCTGTGTATTGTTTACTACATGGATAAAGATGGTCATGGACTATTATTTTCTCGGAAACCATGTATGCAACAACCTAAGCCCACTGCTAGCAGATATTGTCCGCTTTGGCTCATTACATATGCCGCCGGCCTCACGGTTTTAAAACACGTCTACTTGGGAGATGTTTATACACTTTTATAAGGAATGTTTCGTTCTCCTCTCCAACTGATGTGTGATCTCACATTGGTTGGAGAGGGGAGCGAAACATTCCTTATAAGAGTGTGAAACCTCTCCCTAGAGGATGCGTATTAAAACCTTGAGGGGAAGTCCAAAGAGAATAATATCTGCTAGAGGTAGGCTTGAGCTGTTACAATGTAATTTTGTTGCTTTGTGTTGGATATAGCTAATTCTTTCTATTCCATTCAGGTTGTATTATCCCCTGATGCAGATCCTCCGGTTGTCAGAATAATGGATTACAGGTATGCCACTTTCTCACTCTGTTCTTCCCATTACCTCTCTGCTTGTGGAAAAAGTTGTATTTGCTCAAGTCCAATGCCAATCTGATGAACTTTAATGATTACACTAGTTCTTTAGTAAACCCGTTGAGATGATTTATTTTCAATTAATACTTCACTTTCAATTAAATGTTCTTGAGAAAGTAATATATGAAAATACTAAAGAGATGGAAACATGGTACAATGTGATGGAGAAATAATGAAAAATATGATGATTGTTATGTTTTCACTGGGAGAATTAAAGGGTCACATTCGTTTTTCCTTGTTGAATTTTGTTCCTTTTATGTTGAGATTTTTCTTTTCCTGTCTTTCTCAGTAAGTATAGGTACGATCTACAAAAGAAGAAACGAGAACAACAGAAGAAAAGTGCTGGTGAATCTCTTTCTTAATTGAGTCTGCACAATTTATTTGGTTCACAAACCTTTCAGATTTGGGGAAAGATACTAATAATGTGTGGTTTTGAATGTTAGCAACTCGCATGGATTTGAAGGAGCTTAAAATGGGGTAACACATTCCTCAATTGCTTTGTTTTTTTGGAGGTTTTCCTTTCTTTTCTTCTTCTTCTCAACCTAAAGTCACTTGAACTTATGACTTCTAAGATCAATAATCAACCTGTAAAGCCAAGAGTCATGAGAGGCTTTTGTTCCTTGCGTTTCGCTGCCATTTCAGAAATAATTCTGCACACGTTCCTTTTCTCAATCTCAACCTTCTGGTTGCTATTATTATTGCACAGTTATAAAATTGACCAACATGATTACTCTGTTCGTTTGAGAGCTGCAAAGAAGTTTTTGCAAGATGGAGATAAGGTTTCTTCAGGAATCTTTTCTATATCTTTTATCTTCTCTTCATGCATCCAAATATATTGTTATATTTGTTTGCATCACTTTGGAAATCTTGTAACGAATATTGTAGGTTAAAGTTATAGTGAACTTGAAGGGTCGTGAAAACGAGTTCAGAAAAATAGCGATTGAGCTTGTCAAACGTTTCCAGGAAGAGCTCGGGGAGGTACTCATGTTCTATCAGTTTTGTGCCACCTTTAATATCTGTTCATCATGGCAATACTAGAGAAAAATGATGCTCCTTATTGTTTTAAGTGAAAATTGAAAGTGTAGTTTTAGACACTTGGTTGAACTATTTTATCTCTGATGTCTGACCCCATGAAAAACGATTAGTACCTTCAGGGAGAACAGTTTCTAAACCTGTTTAATTTAACCATTTTCTTAAGGTTTGTGGCATGTGAGTTTCCAGGCCTGTAACAGACCGGTCTGTCTAACCTACAATATTTGAACTCATTCATGAGATCTTATTATCTAAAATCTCATAGATGGGTGGCTAAAATGGGGTTTGGACCAAGCACTTTCTTTTTTGTTAGGAATTACGGACCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTACTTTTGGGCTTCTCCAAAAGGCCTCGTACCAATGGAGATTTGTTCCTTATAAACCCATGATACAACTCCTTAATTAACTGATGTGGGACTCCCAACCATCCTTGACATTTCTAAATCTTAACAAGAGCCTAAGTAATCTATAAGAAGGGGCTCTAGTCAAGCAAGTAAGGCCTAAGGAACAATTAAGAAATATATACCGATGGAAATTCGAAGAGAGGCATGATATTTATCGAGGAATCAACCTCCCCTGCTAGTACTTTAACCCCTCTGAAAATCCTGATATTTCTTTTCTCCCCAAAGACGACTTTTTTTGACGATTTGAAGGGGTTGCTTGGTGTCACAATCGCACTTTTCTTGGCAGCGGACTTTGCGATTGTGTGGCGCTCACTTCCCAACACCAAGTGAGTCAAGCCAGTTTGTATTCGCGACACCTTCAGCCGGGCAACACATGCTCAAGCCTCTAGTCTTGATTTGAGAAGAAGGTTTTAGAAGACGGGGACAGAGAGATTTTGAAAGTAAGATTGAGAGAGATTGAAAGCAATGTTATATGACATACAAGCAAAAGGCAACCCAACAACTTAAATAACATATAACTTCTTGGGTAGGGAGAATTCGACAACTAGTCGCATCCTCCTATAGTACATTTTGAGGCGATTCAGGTGGCCTAGACGTGATTTCGCCGAACGGTCATACAAAATCAGGGGGAGAAGTTGACAACTAGTTATATCCCCTATAGTACATTGTGGGGCGATTCAGGTCTGGCAGACCTAAACATGATTTCGCCGAGTAGTCGTACAAACAGAAAATACTAACAATATAACATGGAACTAAATAAAGGGTTTGGCATGACATGGGCAATGCGGCCACGGGCAACACACCCTGGACGAGCATGACCGTGACACTTGGTACCCATTCAGAACATTTTGATCACATGGCTCATTTTTTTACATTTTTCTAGTGTTTTTCTTTCGTTCGAGTCTTCTTCTCCCTTATTTATTTACTCAAATGTAAATATGATACCTTCTGTTATTATCTCTCTTCTCCATTGACCTGCTCAATACTTTATTATTCACAGCTTGCAACTGAAGAGGCCAAAAACTTCAGAGACAGGAATGTATTTATTGTTCTAGCTCCTAACAAGGCTGTTCTTCAAAAGTCTCAAGAACCCCCGAAGAAAAAAGATAAACCTGCTGCAGTTAATGAAGTTTCTGCCCGTGTCGAAGTTTCGGAAGCGTCGAGCTTAAGCCAAAAATAGAAGGGTTAGTCACAACAATCTCAATCTACTTATAGCATATAGAGATATTTGAGAGCTTAATGTATAATGTCCTGTTTAATCTTATGCACCAGATTGTTGTTCATCCTATTTTTTTAGAGGAATGTTTAGAAATCAGATGTGCTACTCATTCTTTTGAAAAGCATCCATATCTCTGAGCTTACTTTTTAGTTTGCTCCAAACTTAGCTTTTAGTGCCTAAGAGGATAGTGAGAGTGATTATTAGCTATCATAGGTTGGCCGGGACACCTTTCCGTGTTTAGAGAGTTGACCGCTCCAATTCTGAGGAAAAATCAGGGGTAGGGTCAACGATCACTCCTGTCACGGGCTGGCAAGAACTCAAGACAATTCCTGTGAAACTCTTTCCTCTGTGTTTCTTGGGAATTTCTTCTCTTCGATGAAAAACTCTTTGGAGAGAATTTCCCTTCCTCG

mRNA sequence

GCCAAATTCACACCCTCCACTGCTCCCTTCCTCAGCTCAAACCTCTATGGCTGGGCTCTCCGGCCGCTTCCCTTTCAAATCTATCTCATCTCAATCCTCCGCCACCGCCACAGCCACCACCACCACCTCCTCCTCCTCCTCCGCCACTCCCTTTCGAACCTCAATTTTCCCTCTACCCCTCCCCTCCTCCAAATCCAATGCCTTCAGATTCCGCCTTCACAACTCCAACTCTCTGCGTCTCGTTTCCTCTCCAATTCGTACTTCTGTATTTGCTCGATACGGCGGCGCTCCTCGATCTTCAGGACCGGCGGGTTCTAAGCGCTCTGAAGATTCTCTTGCTCTCGATGTTTCCTCCATCAGGTCGAATAATGTGAGGCTTATCGATGAACAGCAGAATATGGTTGGAATTGTGCCAAAGTCCCAGGCGATTCAAATGGCTGAGGATGCCGAACTCGATTTGGTTGTATTATCCCCTGATGCAGATCCTCCGGTTGTCAGAATAATGGATTACAGTAAGTATAGGTACGATCTACAAAAGAAGAAACGAGAACAACAGAAGAAAAGTGCTGCAACTCGCATGGATTTGAAGGAGCTTAAAATGGGTTATAAAATTGACCAACATGATTACTCTGTTCGTTTGAGAGCTGCAAAGAAGTTTTTGCAAGATGGAGATAAGGTTAAAGTTATAGTGAACTTGAAGGGTCGTGAAAACGAGTTCAGAAAAATAGCGATTGAGCTTGTCAAACGTTTCCAGGAAGAGCTCGGGGAGCTTGCAACTGAAGAGGCCAAAAACTTCAGAGACAGGAATGTATTTATTGTTCTAGCTCCTAACAAGGCTGTTCTTCAAAAGTCTCAAGAACCCCCGAAGAAAAAAGATAAACCTGCTGCAGTTAATGAAGTTTCTGCCCGTGTCGAAGTTTCGGAAGCGTCGAGCTTAAGCCAAAAATAGAAGGGTTAGTCACAACAATCTCAATCTACTTATAGCATATAGAGATATTTGAGAGCTTAATGTATAATGTCCTGTTTAATCTTATGCACCAGATTGTTGTTCATCCTATTTTTTTAGAGGAATGTTTAGAAATCAGATGTGCTACTCATTCTTTTGAAAAGCATCCATATCTCTGAGCTTACTTTTTAGTTTGCTCCAAACTTAGCTTTTAGTGCCTAAGAGGATAGTGAGAGTGATTATTAGCTATCATAGGTTGGCCGGGACACCTTTCCGTGTTTAGAGAGTTGACCGCTCCAATTCTGAGGAAAAATCAGGGGTAGGGTCAACGATCACTCCTGTCACGGGCTGGCAAGAACTCAAGACAATTCCTGTGAAACTCTTTCCTCTGTGTTTCTTGGGAATTTCTTCTCTTCGATGAAAAACTCTTTGGAGAGAATTTCCCTTCCTCG

Coding sequence (CDS)

ATGGCTGGGCTCTCCGGCCGCTTCCCTTTCAAATCTATCTCATCTCAATCCTCCGCCACCGCCACAGCCACCACCACCACCTCCTCCTCCTCCTCCGCCACTCCCTTTCGAACCTCAATTTTCCCTCTACCCCTCCCCTCCTCCAAATCCAATGCCTTCAGATTCCGCCTTCACAACTCCAACTCTCTGCGTCTCGTTTCCTCTCCAATTCGTACTTCTGTATTTGCTCGATACGGCGGCGCTCCTCGATCTTCAGGACCGGCGGGTTCTAAGCGCTCTGAAGATTCTCTTGCTCTCGATGTTTCCTCCATCAGGTCGAATAATGTGAGGCTTATCGATGAACAGCAGAATATGGTTGGAATTGTGCCAAAGTCCCAGGCGATTCAAATGGCTGAGGATGCCGAACTCGATTTGGTTGTATTATCCCCTGATGCAGATCCTCCGGTTGTCAGAATAATGGATTACAGTAAGTATAGGTACGATCTACAAAAGAAGAAACGAGAACAACAGAAGAAAAGTGCTGCAACTCGCATGGATTTGAAGGAGCTTAAAATGGGTTATAAAATTGACCAACATGATTACTCTGTTCGTTTGAGAGCTGCAAAGAAGTTTTTGCAAGATGGAGATAAGGTTAAAGTTATAGTGAACTTGAAGGGTCGTGAAAACGAGTTCAGAAAAATAGCGATTGAGCTTGTCAAACGTTTCCAGGAAGAGCTCGGGGAGCTTGCAACTGAAGAGGCCAAAAACTTCAGAGACAGGAATGTATTTATTGTTCTAGCTCCTAACAAGGCTGTTCTTCAAAAGTCTCAAGAACCCCCGAAGAAAAAAGATAAACCTGCTGCAGTTAATGAAGTTTCTGCCCGTGTCGAAGTTTCGGAAGCGTCGAGCTTAAGCCAAAAATAG

Homology

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BLAST of CmoCh05G010410 vs. Swiss-Prot
Match: IF3_NOSP7 (Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=infC PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-31
Identity = 78/176 (44.32%), Postives = 119/176 (67.61%), Query Frame = 1


Query: 91  KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVV 150
           KR+ D   ++   IR   +R+ID     +GI+P  +A+Q+AE+ ELDLV++S  ADPPV 
Sbjct: 7   KRTRDLPQIN-ERIRFPKIRVIDTDGAQLGIMPPQEALQLAEEKELDLVLISDKADPPVC 66

Query: 151 RIMDYSKYRYDLQKKKREQQKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDK 210
           RIMDY KY+++ +KK RE +KK      D+KE+KM YKI++HDY+VR++ A++FL+DGDK
Sbjct: 67  RIMDYGKYKFEQEKKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDK 126

Query: 211 VKVIVNLKGRENEFRKIAIELVKRFQEEL---GELATEEAKNFRDRNVFIVLAPNK 264
           VK  V  +GRE +   +A +L+KR   +L   GEL  ++A     RN+ ++++P K
Sbjct: 127 VKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEL--QQAPKKEGRNMMMLISPKK 177

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BLAST of CmoCh05G010410 vs. Swiss-Prot
Match: IF3_NOSS1 (Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=infC PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.6e-30
Identity = 75/174 (43.10%), Postives = 116/174 (66.67%), Query Frame = 1


Query: 91  KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVV 150
           KR+ D   ++   IR   +R+ID   + +GI+   +A+Q+AE+ ELDLV+LS  ADPPV 
Sbjct: 7   KRTRDLPQIN-ERIRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVC 66

Query: 151 RIMDYSKYRYDLQKKKREQQKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDK 210
           RIMDY KY+++ +KK RE +KK      D+KE+KM YKI++HDY+VR++ A++FL+DGDK
Sbjct: 67  RIMDYGKYKFEQEKKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDK 126

Query: 211 VKVIVNLKGRENEFRKIAIELVKRFQEELGELA-TEEAKNFRDRNVFIVLAPNK 264
           VK  V  +GRE +   +A +L+KR   +L      ++A     RN+ ++++P K
Sbjct: 127 VKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKEGRNMMMLISPKK 177

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BLAST of CmoCh05G010410 vs. Swiss-Prot
Match: IF3_ANAVT (Translation initiation factor IF-3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=infC PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.6e-30
Identity = 75/174 (43.10%), Postives = 116/174 (66.67%), Query Frame = 1


Query: 91  KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVV 150
           KR+ D   ++   IR   +R+ID   + +GI+   +A+Q+AE+ ELDLV+LS  ADPPV 
Sbjct: 7   KRTRDLPQIN-ERIRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVC 66

Query: 151 RIMDYSKYRYDLQKKKREQQKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDK 210
           RIMDY KY+++ +KK RE +KK      D+KE+KM YKI++HDY+VR++ A++FL+DGDK
Sbjct: 67  RIMDYGKYKFEQEKKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDK 126

Query: 211 VKVIVNLKGRENEFRKIAIELVKRFQEELGELA-TEEAKNFRDRNVFIVLAPNK 264
           VK  V  +GRE +   +A +L+KR   +L      ++A     RN+ ++++P K
Sbjct: 127 VKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKEGRNMMMLISPKK 177

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BLAST of CmoCh05G010410 vs. Swiss-Prot
Match: IF3_CALS4 (Translation initiation factor IF-3 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=infC PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.5e-30
Identity = 70/161 (43.48%), Postives = 110/161 (68.32%), Query Frame = 1


Query: 104 IRSNNVRLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQ 163
           IR   VRLID+    +GI+   +A ++A++  LDLV + P+A+PPV ++MD+ KYRY+L 
Sbjct: 21  IRDKEVRLIDQDGKQIGIMSAKEAYKIAQERHLDLVKIVPNANPPVCKLMDFGKYRYELS 80

Query: 164 KKKREQQKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENE 223
           K+++E +KK     +++KE++M   I+ HD+ V+L++A KFL+DGDKVKV +  +GRE  
Sbjct: 81  KREKEAKKKQKI--INVKEIRMSPNIEDHDFGVKLKSAIKFLKDGDKVKVTIRFRGREAA 140

Query: 224 FRKIAIELVKRFQEELGELA-TEEAKNFRDRNVFIVLAPNK 264
              +A +L+KRF EEL E    E+A +   RN+ +V+AP K
Sbjct: 141 HTSLAEDLLKRFAEELREYGNVEKAPSMDGRNMMMVIAPKK 179

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BLAST of CmoCh05G010410 vs. Swiss-Prot
Match: IF3_MICAN (Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) GN=infC PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.5e-30
Identity = 70/161 (43.48%), Postives = 111/161 (68.94%), Query Frame = 1


Query: 104 IRSNNVRLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQ 163
           IR   +R+ID   + +GI+  ++A+++AE+ ELDLV++S  A PPV RIMDY KY+++ +
Sbjct: 18  IRFPEIRVIDSDGSQLGIITPAEALRVAEEKELDLVLVSETASPPVCRIMDYGKYKFEQE 77

Query: 164 KKKREQQKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENE 223
           KK RE +KK      D+KE+KM YKID+HDY+VR+  A++FL+ GDKVK  +  +GRE +
Sbjct: 78  KKAREAKKKQHTA--DIKEVKMRYKIDEHDYNVRVNQAQRFLKAGDKVKATITFRGREIQ 137

Query: 224 FRKIAIELVKRFQEELGELA-TEEAKNFRDRNVFIVLAPNK 264
              +A EL+ R  ++L ++A  ++A     RN+ ++L+P K
Sbjct: 138 HSNLAEELLARMAKDLQDVAEVQQAPKKEGRNMMMMLSPKK 176

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BLAST of CmoCh05G010410 vs. TrEMBL
Match: A0A0A0LH34_CUCSA (Translation initiation factor IF-3 OS=Cucumis sativus GN=Csa_2G036070 PE=3 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 2.9e-116
Identity = 239/300 (79.67%), Postives = 262/300 (87.33%), Query Frame = 1


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTS------SSSSATPFRTSIFPLPLPSSKSNAFR 60
           MAGLSG FPFKS+ SQSSA AT T+++S      SSSS TPFRTS   LP+ SS SNAF+
Sbjct: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK 60

Query: 61  FRLHNSNSLRL-----VSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNV 120
           FRLH SNSLRL     VSSPIRTSVFAR GGAPRSSGP  SKRS D + LD+S+I+S NV
Sbjct: 61  FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINV 120

Query: 121 RLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQ 180
           RLID +QNMVG+V K+QAIQMAEDAELDLVV+SPDADPPVVRIMDY+KYRY+LQKKKR Q
Sbjct: 121 RLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQ 180

Query: 181 QKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAI 240
           QKKSAATRMDLKELKMGY IDQHDYSVRL+AAKKFL+DGDKVKVIVNLKGRENEFR IAI
Sbjct: 181 QKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAI 240

Query: 241 ELVKRFQEELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
           EL++RFQEE+GELATEEAKNFRDRN+FIVL PNKAVLQK+QEPPKKKDKP AVN VSA V
Sbjct: 241 ELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKP-AVNGVSASV 299

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BLAST of CmoCh05G010410 vs. TrEMBL
Match: B9T4Q8_RICCO (Translation initiation factor IF-3 OS=Ricinus communis GN=RCOM_0443750 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.8e-87
Identity = 197/293 (67.24%), Postives = 226/293 (77.13%), Query Frame = 1


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60
           MAG++  FPF  + +Q +   TAT TT                 L S +S  F  R H S
Sbjct: 1   MAGITTSFPFNPLLTQLT---TATKTTQ--------------FILSSLESKLFGLRFHCS 60

Query: 61  NSLRLVSSPIRTSVF--ARYGGAPRSSGPAGSKRS--EDSLALDVSSIRSNNVRLIDEQQ 120
               L+S   R SV   AR+GG  RSSG   S++S  ED  ALD+S+IRS  VRLIDEQQ
Sbjct: 61  KPDSLISLS-RASVVTSARFGGGFRSSGDRRSRQSDSEDDHALDISTIRSATVRLIDEQQ 120

Query: 121 NMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAAT 180
           NMVG+VPKS+AIQMAE+A LDLV+LSPDADPPVVRIMDY+KYRY+LQKKK+ QQKKSAAT
Sbjct: 121 NMVGVVPKSEAIQMAENAALDLVILSPDADPPVVRIMDYNKYRYELQKKKKGQQKKSAAT 180

Query: 181 RMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQ 240
           RMDLKELKMGY IDQHDY VRLRAA+KFL+DGDKVKVIVNLKGRENEFR IAIEL++RFQ
Sbjct: 181 RMDLKELKMGYNIDQHDYDVRLRAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ 240

Query: 241 EELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
            ++GELATEE KNFRDRN+FI LAPNKA+LQKSQEPPKK+DK +AVNEVSA V
Sbjct: 241 NDVGELATEETKNFRDRNIFITLAPNKAILQKSQEPPKKRDK-SAVNEVSAGV 274

[Close]

BLAST of CmoCh05G010410 vs. TrEMBL
Match: A0A061GWG8_THECC (Translation initiation factor IF-3 OS=Theobroma cacao GN=TCM_038405 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.9e-83
Identity = 180/291 (61.86%), Postives = 219/291 (75.26%), Query Frame = 1


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60
           MAG++  FPFK + ++ + T                     PL   S +S  F     N+
Sbjct: 1   MAGITTSFPFKPLPTRPTKT--------------------IPLLRSSLESKLFGLHFRNA 60

Query: 61  NSLRLVSSPIRTS--VFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNM 120
           NS    SS +  S  + ARYGG  R SGP  S+R+++  ALD+S IRS++VRLIDEQQNM
Sbjct: 61  NSFSSSSSSLHCSAAITARYGGDSRFSGPGRSRRNDEDQALDISGIRSDSVRLIDEQQNM 120

Query: 121 VGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRM 180
           VGIV KSQA++MAEDAELDLV+LSPDADPPVVRIMDY+KY+Y+ QKKK+ QQKK+   RM
Sbjct: 121 VGIVSKSQAVEMAEDAELDLVILSPDADPPVVRIMDYNKYKYEQQKKKKLQQKKT--NRM 180

Query: 181 DLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEE 240
           DLKELKMGY IDQHDYSVRL+AA+KFL+DGDKVKVIVNLKGRENEFR +A+EL++RFQ +
Sbjct: 181 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNMAMELIRRFQND 240

Query: 241 LGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
           +GELA EE+KNFRDRN+FIVL PNKA+LQK+Q+P KKKDKP   NEVSA V
Sbjct: 241 VGELAAEESKNFRDRNIFIVLVPNKALLQKAQDPGKKKDKPTK-NEVSAGV 268

[Close]

BLAST of CmoCh05G010410 vs. TrEMBL
Match: A0A061GNM3_THECC (Translation initiation factor IF-3 OS=Theobroma cacao GN=TCM_038405 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 4.6e-82
Identity = 180/292 (61.64%), Postives = 219/292 (75.00%), Query Frame = 1


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60
           MAG++  FPFK + ++ + T                     PL   S +S  F     N+
Sbjct: 1   MAGITTSFPFKPLPTRPTKT--------------------IPLLRSSLESKLFGLHFRNA 60

Query: 61  NSLRLVSSPIRTS--VFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNM 120
           NS    SS +  S  + ARYGG  R SGP  S+R+++  ALD+S IRS++VRLIDEQQNM
Sbjct: 61  NSFSSSSSSLHCSAAITARYGGDSRFSGPGRSRRNDEDQALDISGIRSDSVRLIDEQQNM 120

Query: 121 VGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRM 180
           VGIV KSQA++MAEDAELDLV+LSPDADPPVVRIMDY+KY+Y+ QKKK+ QQKK+   RM
Sbjct: 121 VGIVSKSQAVEMAEDAELDLVILSPDADPPVVRIMDYNKYKYEQQKKKKLQQKKT--NRM 180

Query: 181 DLKELKMGYKIDQHDYSVRLRAAKKFLQDGDK-VKVIVNLKGRENEFRKIAIELVKRFQE 240
           DLKELKMGY IDQHDYSVRL+AA+KFL+DGDK VKVIVNLKGRENEFR +A+EL++RFQ 
Sbjct: 181 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVVKVIVNLKGRENEFRNMAMELIRRFQN 240

Query: 241 ELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
           ++GELA EE+KNFRDRN+FIVL PNKA+LQK+Q+P KKKDKP   NEVSA V
Sbjct: 241 DVGELAAEESKNFRDRNIFIVLVPNKALLQKAQDPGKKKDKPTK-NEVSAGV 269

[Close]

BLAST of CmoCh05G010410 vs. TrEMBL
Match: A0A067KUU8_JATCU (Translation initiation factor IF-3 OS=Jatropha curcas GN=JCGZ_04056 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 7.9e-82
Identity = 185/291 (63.57%), Postives = 223/291 (76.63%), Query Frame = 1


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60
           MAG++      S SS    T T + TT S  S +   + +F L LP S  +         
Sbjct: 1   MAGIT------STSSFFILTPTTSRTTPSLLSLSSLESKLFGLRLPGSNLSK------PD 60

Query: 61  NSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSE--DSLALDVSSIRSNNVRLIDEQQNM 120
           +S+ L  +   + V ARYGG+        S++S+  D  ALD+S IRS +VRLIDEQQNM
Sbjct: 61  SSIALSYAFSISEVTARYGGSRSGFDSRRSRKSDSDDEQALDMSIIRSASVRLIDEQQNM 120

Query: 121 VGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRM 180
           VG+VPK+QAIQMAEDAELDLV+LSP+ADPPVVRIMDY+KYRY+LQKKK+ QQKKSAATRM
Sbjct: 121 VGVVPKTQAIQMAEDAELDLVILSPEADPPVVRIMDYNKYRYELQKKKKGQQKKSAATRM 180

Query: 181 DLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEE 240
           DLKELKMGY IDQHDY VRLRAA+KFL+DGDKVKVIVNLKGREN+FR IAIEL++RFQ +
Sbjct: 181 DLKELKMGYNIDQHDYDVRLRAAQKFLKDGDKVKVIVNLKGRENDFRNIAIELIRRFQND 240

Query: 241 LGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
           +GELATEE+KNFRDRN+FI L PNKA+LQKSQEPPKK++K +A NE+SA V
Sbjct: 241 IGELATEESKNFRDRNIFITLVPNKAILQKSQEPPKKREK-SATNEISAGV 278

[Close]

BLAST of CmoCh05G010410 vs. TAIR10
Match: AT4G30690.1 (AT4G30690.1 Translation initiation factor 3 protein)

HSP 1 Score: 284.6 bits (727), Expect = 6.8e-77
Identity = 154/225 (68.44%), Postives = 183/225 (81.33%), Query Frame = 1


Query: 73  SVFARYGGAPRSSGPAGS----------KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIV 132
           ++  RYGG     G  GS          K SED  +LD+S+IRS  VRLID+QQNM+G+V
Sbjct: 54  AITCRYGGG----GGGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLV 113

Query: 133 PKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDLKE 192
            K +A++ AEDAELDLV+LSPDADPPVVR+MDYSKYRY+ QK+K+EQQKK+  TRMDLKE
Sbjct: 114 SKEEAVRRAEDAELDLVILSPDADPPVVRMMDYSKYRYEQQKRKKEQQKKT--TRMDLKE 173

Query: 193 LKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELGEL 252
           LKMGY IDQHDYSVR+RAA+KFLQDGDKVKVIVN+KGRENEFR IAIEL++RFQ E+GEL
Sbjct: 174 LKMGYNIDQHDYSVRMRAARKFLQDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGEL 233

Query: 253 ATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSA 288
            TEE+KNFRDRN+FIVL PNK V++K QEPP KK K  A ++VSA
Sbjct: 234 GTEESKNFRDRNLFIVLVPNKEVIRKVQEPPPKKKKKPADDKVSA 272

[Close]

BLAST of CmoCh05G010410 vs. TAIR10
Match: AT2G24060.1 (AT2G24060.1 Translation initiation factor 3 protein)

HSP 1 Score: 273.1 bits (697), Expect = 2.1e-73
Identity = 166/277 (59.93%), Postives = 200/277 (72.20%), Query Frame = 1


Query: 18  SATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNSNSLRLVSSPIR----TS 77
           +A  T  T T SS S       +F +    SK  + R      +   L  SP R    T 
Sbjct: 12  NAVFTGITKTVSSHS-------LFSV---DSKLCSLRLSKTELSFTNLTPSPRRAFAVTC 71

Query: 78  VFARYGGAPRSSGP---AGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQM 137
            F   GG  R SG       K +E   ALD+SSIRS  VRLID QQNM+G+V K +A++M
Sbjct: 72  RFGGGGGGYRFSGDNRRGRPKEAEIDEALDISSIRSATVRLIDGQQNMLGLVSKDEAVRM 131

Query: 138 AEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDLKELKMGYKID 197
           A+DAELDLV+LSPDADPPVV++MDYSKYRY+ QK+K++QQKK+  TRMDLKELKMGY ID
Sbjct: 132 ADDAELDLVILSPDADPPVVKMMDYSKYRYEQQKRKKDQQKKT--TRMDLKELKMGYNID 191

Query: 198 QHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELGELATEEAKNF 257
           QHDYSVRLRAA+KFLQDGDKVKVIV++KGRENEFR IAIEL++RFQ E+GELATEE+KNF
Sbjct: 192 QHDYSVRLRAAQKFLQDGDKVKVIVSMKGRENEFRNIAIELLRRFQTEIGELATEESKNF 251

Query: 258 RDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSA 288
           RDRN+FI+L PNK +++K QEPP +K K  A NE SA
Sbjct: 252 RDRNMFIILVPNKEMIRKPQEPPTRKKKKTAENEASA 276

[Close]

BLAST of CmoCh05G010410 vs. TAIR10
Match: AT1G34360.1 (AT1G34360.1 translation initiation factor 3 (IF-3) family protein)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-08
Identity = 66/205 (32.20%), Postives = 104/205 (50.73%), Query Frame = 1


Query: 104 IRSNNVRLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQ 163
           I  + VRL+ E+ + V  V   +A++ A++ + DLV +  DA PPV +I+ YS   Y   
Sbjct: 90  ITGDYVRLVSEEGHCV--VSLREALRRAKELQCDLVEVQRDAKPPVCKIVKYSLELYKKA 149

Query: 164 K--KKREQQKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIV---NLK 223
           K  K+R + K++ A R D+KE++   KI+  D   +   A K ++ G +VK +      K
Sbjct: 150 KVGKERAKAKRAEAIRPDIKEIRFTPKIEAKDLKFKSDQALKLMESGYRVKCLAVPDKDK 209

Query: 224 GRENEFRKIAIELVKRFQEELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKK--- 283
            +E E  K+ +EL+ RF   +G+ A  E+    DR   +V+     V      PPKK   
Sbjct: 210 HKELEPEKL-LELLFRFTCFIGD-ALVESWPEADRKGAVVI-----VRHAKFGPPKKGGV 269

Query: 284 ---KD---KPAAVNEVSARVEVSEA 295
              KD   K A V E S + + S+A
Sbjct: 270 KLMKDIDIKSARVKEESPKPDSSKA 285

[Close]

BLAST of CmoCh05G010410 vs. NCBI nr
Match: gi|449453964|ref|XP_004144726.1| (PREDICTED: translation initiation factor IF-3, chloroplastic [Cucumis sativus])

HSP 1 Score: 426.4 bits (1095), Expect = 4.1e-116
Identity = 239/300 (79.67%), Postives = 262/300 (87.33%), Query Frame = 1


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTS------SSSSATPFRTSIFPLPLPSSKSNAFR 60
           MAGLSG FPFKS+ SQSSA AT T+++S      SSSS TPFRTS   LP+ SS SNAF+
Sbjct: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK 60

Query: 61  FRLHNSNSLRL-----VSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNV 120
           FRLH SNSLRL     VSSPIRTSVFAR GGAPRSSGP  SKRS D + LD+S+I+S NV
Sbjct: 61  FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINV 120

Query: 121 RLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQ 180
           RLID +QNMVG+V K+QAIQMAEDAELDLVV+SPDADPPVVRIMDY+KYRY+LQKKKR Q
Sbjct: 121 RLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQ 180

Query: 181 QKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAI 240
           QKKSAATRMDLKELKMGY IDQHDYSVRL+AAKKFL+DGDKVKVIVNLKGRENEFR IAI
Sbjct: 181 QKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAI 240

Query: 241 ELVKRFQEELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
           EL++RFQEE+GELATEEAKNFRDRN+FIVL PNKAVLQK+QEPPKKKDKP AVN VSA V
Sbjct: 241 ELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKP-AVNGVSASV 299

[Close]

BLAST of CmoCh05G010410 vs. NCBI nr
Match: gi|659069971|ref|XP_008452687.1| (PREDICTED: translation initiation factor IF-3, chloroplastic [Cucumis melo])

HSP 1 Score: 425.6 bits (1093), Expect = 7.0e-116
Identity = 242/298 (81.21%), Postives = 260/298 (87.25%), Query Frame = 1


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTS---SSSSATPFRTSIFPLPLPSS-KSNAFRFR 60
           MAGLSG FPFKS+ SQSSA +T T+  +   SSSS TPFRTS   LP+ SS  SNAF+ R
Sbjct: 1   MAGLSGSFPFKSLLSQSSAASTTTSPAAAPTSSSSTTPFRTSTPSLPISSSFNSNAFKLR 60

Query: 61  LHNSNSLRLV-----SSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRL 120
           LH SNSLRLV     SSPIRTSVFAR GGAPRSSGP  SKRS D   LDVS+IRSNNVRL
Sbjct: 61  LHKSNSLRLVFSFPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEFGLDVSAIRSNNVRL 120

Query: 121 IDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQK 180
           ID QQNMVG+V K+QAIQMAEDAELDLVVLSPDADPPVVRIMDY+KYRY+LQKKKR QQK
Sbjct: 121 IDAQQNMVGVVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQK 180

Query: 181 KSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIEL 240
           KSAATRMDLKELKMGY IDQHDYSVRL+AAKKFL+DGDKVKVIVNLKGRENEFR IAIEL
Sbjct: 181 KSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIEL 240

Query: 241 VKRFQEELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
           ++RFQEE+GELATEEAKNFRDRN+FIVL PNKAVLQK+QEPPKKKDKP AVNEVSA V
Sbjct: 241 IRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKP-AVNEVSAGV 297

[Close]

BLAST of CmoCh05G010410 vs. NCBI nr
Match: gi|255585038|ref|XP_002533227.1| (PREDICTED: translation initiation factor IF-3 [Ricinus communis])

HSP 1 Score: 330.1 bits (845), Expect = 4.0e-87
Identity = 197/293 (67.24%), Postives = 226/293 (77.13%), Query Frame = 1


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60
           MAG++  FPF  + +Q +   TAT TT                 L S +S  F  R H S
Sbjct: 1   MAGITTSFPFNPLLTQLT---TATKTTQ--------------FILSSLESKLFGLRFHCS 60

Query: 61  NSLRLVSSPIRTSVF--ARYGGAPRSSGPAGSKRS--EDSLALDVSSIRSNNVRLIDEQQ 120
               L+S   R SV   AR+GG  RSSG   S++S  ED  ALD+S+IRS  VRLIDEQQ
Sbjct: 61  KPDSLISLS-RASVVTSARFGGGFRSSGDRRSRQSDSEDDHALDISTIRSATVRLIDEQQ 120

Query: 121 NMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAAT 180
           NMVG+VPKS+AIQMAE+A LDLV+LSPDADPPVVRIMDY+KYRY+LQKKK+ QQKKSAAT
Sbjct: 121 NMVGVVPKSEAIQMAENAALDLVILSPDADPPVVRIMDYNKYRYELQKKKKGQQKKSAAT 180

Query: 181 RMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQ 240
           RMDLKELKMGY IDQHDY VRLRAA+KFL+DGDKVKVIVNLKGRENEFR IAIEL++RFQ
Sbjct: 181 RMDLKELKMGYNIDQHDYDVRLRAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ 240

Query: 241 EELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
            ++GELATEE KNFRDRN+FI LAPNKA+LQKSQEPPKK+DK +AVNEVSA V
Sbjct: 241 NDVGELATEETKNFRDRNIFITLAPNKAILQKSQEPPKKRDK-SAVNEVSAGV 274

[Close]

BLAST of CmoCh05G010410 vs. NCBI nr
Match: gi|1009109779|ref|XP_015892083.1| (PREDICTED: translation initiation factor IF-3-like [Ziziphus jujuba])

HSP 1 Score: 324.3 bits (830), Expect = 2.2e-85
Identity = 188/292 (64.38%), Postives = 226/292 (77.40%), Query Frame = 1


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60
           MAG++   P K + +Q+S   T +    SSS    F + +F L L +S        L  S
Sbjct: 11  MAGIATGCPLKLVHTQTSTNTTPSLLPISSS----FDSKLFGLRLQNSS-------LAKS 70

Query: 61  NSLRLVSSPIRTSVFARYGGAPRSSGPAGSKR---SEDSLALDVSSIRSNNVRLIDEQQN 120
           +SL   SS    ++ +RYGG  R SGP    R   S+D  ALD+S+IRS++VRLIDE QN
Sbjct: 71  SSLVYASSSFSAAITSRYGGGSRYSGPDKRSRQSYSDDDQALDISTIRSDSVRLIDENQN 130

Query: 121 MVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATR 180
           MVGIV KS+A+++AEDAELDLV+LSPDADPPVV+IMDY+KYRY+ QKKKR+QQKKSAA+R
Sbjct: 131 MVGIVSKSEAVRIAEDAELDLVILSPDADPPVVKIMDYNKYRYEQQKKKRDQQKKSAASR 190

Query: 181 MDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQE 240
           M LKELKMGY IDQHDYSVRL+AA+KFL+DGDKVKVIVNLKGRENEFR IAIEL++RFQ 
Sbjct: 191 MALKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQN 250

Query: 241 ELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
           E+GELATEEAKNFRDRN+FI+L PN+ VLQK QEPP KKDK +AVNEVSA V
Sbjct: 251 EVGELATEEAKNFRDRNIFIILVPNRTVLQKGQEPPAKKDK-SAVNEVSAGV 290

[Close]

BLAST of CmoCh05G010410 vs. NCBI nr
Match: gi|590579683|ref|XP_007013855.1| (Translation initiation factor 3 protein isoform 1 [Theobroma cacao])

HSP 1 Score: 317.4 bits (812), Expect = 2.7e-83
Identity = 180/291 (61.86%), Postives = 219/291 (75.26%), Query Frame = 1


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60
           MAG++  FPFK + ++ + T                     PL   S +S  F     N+
Sbjct: 1   MAGITTSFPFKPLPTRPTKT--------------------IPLLRSSLESKLFGLHFRNA 60

Query: 61  NSLRLVSSPIRTS--VFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNM 120
           NS    SS +  S  + ARYGG  R SGP  S+R+++  ALD+S IRS++VRLIDEQQNM
Sbjct: 61  NSFSSSSSSLHCSAAITARYGGDSRFSGPGRSRRNDEDQALDISGIRSDSVRLIDEQQNM 120

Query: 121 VGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRM 180
           VGIV KSQA++MAEDAELDLV+LSPDADPPVVRIMDY+KY+Y+ QKKK+ QQKK+   RM
Sbjct: 121 VGIVSKSQAVEMAEDAELDLVILSPDADPPVVRIMDYNKYKYEQQKKKKLQQKKT--NRM 180

Query: 181 DLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEE 240
           DLKELKMGY IDQHDYSVRL+AA+KFL+DGDKVKVIVNLKGRENEFR +A+EL++RFQ +
Sbjct: 181 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNMAMELIRRFQND 240

Query: 241 LGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
           +GELA EE+KNFRDRN+FIVL PNKA+LQK+Q+P KKKDKP   NEVSA V
Sbjct: 241 VGELAAEESKNFRDRNIFIVLVPNKALLQKAQDPGKKKDKPTK-NEVSAGV 268

The following BLAST results are available for this feature:

BLAST of CmoCh05G010410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IF3_NOSP7	4.1e-31	44.32	Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PC...	[more]
IF3_NOSS1	1.6e-30	43.10	Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) G...	[more]
IF3_ANAVT	1.6e-30	43.10	Translation initiation factor IF-3 OS=Anabaena variabilis (strain ATCC 29413 / P...	[more]
IF3_CALS4	3.5e-30	43.48	Translation initiation factor IF-3 OS=Caldanaerobacter subterraneus subsp. tengc...	[more]
IF3_MICAN	4.5e-30	43.48	Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) G...	[more]

BLAST of CmoCh05G010410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH34_CUCSA	2.9e-116	79.67	Translation initiation factor IF-3 OS=Cucumis sativus GN=Csa_2G036070 PE=3 SV=1	[more]
B9T4Q8_RICCO	2.8e-87	67.24	Translation initiation factor IF-3 OS=Ricinus communis GN=RCOM_0443750 PE=3 SV=1	[more]
A0A061GWG8_THECC	1.9e-83	61.86	Translation initiation factor IF-3 OS=Theobroma cacao GN=TCM_038405 PE=3 SV=1	[more]
A0A061GNM3_THECC	4.6e-82	61.64	Translation initiation factor IF-3 OS=Theobroma cacao GN=TCM_038405 PE=3 SV=1	[more]
A0A067KUU8_JATCU	7.9e-82	63.57	Translation initiation factor IF-3 OS=Jatropha curcas GN=JCGZ_04056 PE=3 SV=1	[more]

BLAST of CmoCh05G010410 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30690.1	6.8e-77	68.44	Translation initiation factor 3 protein	[more]
AT2G24060.1	2.1e-73	59.93	Translation initiation factor 3 protein	[more]
AT1G34360.1	3.0e-08	32.20	translation initiation factor 3 (IF-3) family protein	[more]

BLAST of CmoCh05G010410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453964\|ref\|XP_004144726.1\|	4.1e-116	79.67	PREDICTED: translation initiation factor IF-3, chloroplastic [Cucumis sativus]	[more]
gi\|659069971\|ref\|XP_008452687.1\|	7.0e-116	81.21	PREDICTED: translation initiation factor IF-3, chloroplastic [Cucumis melo]	[more]
gi\|255585038\|ref\|XP_002533227.1\|	4.0e-87	67.24	PREDICTED: translation initiation factor IF-3 [Ricinus communis]	[more]
gi\|1009109779\|ref\|XP_015892083.1\|	2.2e-85	64.38	PREDICTED: translation initiation factor IF-3-like [Ziziphus jujuba]	[more]
gi\|590579683\|ref\|XP_007013855.1\|	2.7e-83	61.86	Translation initiation factor 3 protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001288	Translation_initiation_fac_3
IPR019813	Translation_initiation_fac3_CS
IPR019814	Translation_initiation_fac_3_N
IPR019815	Translation_initiation_fac_3_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G010410.1	CmoCh05G010410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001288	Translation initiation factor 3	HAMAP	MF_00080	IF_3	coord: 90..264 score: 23
IPR001288	Translation initiation factor 3	PANTHER	PTHR10938	TRANSLATION INITIATION FACTOR IF-3	coord: 9..279 score: 3.6
IPR001288	Translation initiation factor 3	TIGRFAMs	TIGR00168	TIGR00168	coord: 103..263 score: 7.9
IPR019813	Translation initiation factor 3, conserved site	PROSITE	PS00938	IF3	coord: 151..164 scor
IPR019814	Translation initiation factor 3, N-terminal	GENE3D	G3DSA:3.10.20.80		coord: 103..171 score: 1.8
IPR019814	Translation initiation factor 3, N-terminal	PFAM	PF05198	IF3_N	coord: 103..169 score: 2.9
IPR019814	Translation initiation factor 3, N-terminal	unknown	SSF54364	Translation initiation factor IF3, N-terminal domain	coord: 103..171 score: 1.96
IPR019815	Translation initiation factor 3, C-terminal	GENE3D	G3DSA:3.30.110.10		coord: 177..263 score: 6.1
IPR019815	Translation initiation factor 3, C-terminal	PFAM	PF00707	IF3_C	coord: 179..262 score: 8.3
IPR019815	Translation initiation factor 3, C-terminal	unknown	SSF55200	Translation initiation factor IF3, C-terminal domain	coord: 178..263 score: 3.92
None	No IPR available	PANTHER	PTHR10938:SF0	TRANSLATION INITIATION FACTOR IF-3, MITOCHONDRIAL	coord: 9..279 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G010410	Cucsa.090080	Cucumber (Gy14) v1	cgycmoB0179
CmoCh05G010410	CmaCh05G010270	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G010410	CmaCh12G008500	Cucurbita maxima (Rimu)	cmacmoB195
CmoCh05G010410	Cla020022	Watermelon (97103) v1	cmowmB757
CmoCh05G010410	Csa2G036070	Cucumber (Chinese Long) v2	cmocuB784
CmoCh05G010410	MELO3C004125	Melon (DHL92) v3.5.1	cmomeB724
CmoCh05G010410	ClCG02G014380	Watermelon (Charleston Gray)	cmowcgB700
CmoCh05G010410	CSPI02G05270	Wild cucumber (PI 183967)	cmocpiB787
CmoCh05G010410	Lsi11G006930	Bottle gourd (USVL1VR-Ls)	cmolsiB706
CmoCh05G010410	Cp4.1LG11g08350	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G010410	Cp4.1LG07g07070	Cucurbita pepo (Zucchini)	cmocpeB748
CmoCh05G010410	MELO3C004125.2	Melon (DHL92) v3.6.1	cmomedB821
CmoCh05G010410	CsaV3_2G007620	Cucumber (Chinese Long) v3	cmocucB0924
CmoCh05G010410	Cla97C02G040140	Watermelon (97103) v2	cmowmbB785
CmoCh05G010410	Bhi06G001220	Wax gourd	cmowgoB0920
CmoCh05G010410	Carg11964	Silver-seed gourd	carcmoB0769
CmoCh05G010410	Carg16428	Silver-seed gourd	carcmoB1224

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G010410	CmoCh12G008540	Cucurbita moschata (Rifu)	cmocmoB153

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G010410	Cucumber (Gy14) v2	cgybcmoB243