Cucsa.084630 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.084630
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Protein of unknown function (DUF3464)
Location	scaffold00862 : 330742 .. 330922 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAATTCAGTGTGACATTGTTGAAGATTTTTCAAGCGATCAAGGAGCAAAACCTTTGGAATGTGCCTATTTGGATGCCGTTATCGACGAGTTTAGATGGGGAGAAGAAAAGATCCGTGTTGGGATGGGAAGAGAAGCAAAAGAATTGGATTGAAATGCAGAAGGAGGAAGATGAAG

mRNA sequence

ATGGTGGAATTCAGTGTGACATTGTTGAAGATTTTTCAAGCGATCAAGGAGCAAAACCTTTGGAATGTGCCTATTTGGATGCCGTTATCGACGAGTTTAGATGGGGAGAAGAAAAGATCCGTGTTGGGATGGGAAGAGAAGCAAAAGAATTGGATTGAAATGCAGAAGGAGGAAGATGAAG

Coding sequence (CDS)

ATGGTGGAATTCAGTGTGACATTGTTGAAGATTTTTCAAGCGATCAAGGAGCAAAACCTTTGGAATGTGCCTATTTGGATGCCGTTATCGACGAGTTTAGATGGGGAGAAGAAAAGATCCGTGTTGGGATGGGAAGAGAAGCAAAAGAATTGGATTGAAATGCAGAAGGAGGAAGATGAAG

Protein sequence

MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDEX

Homology

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BLAST of Cucsa.084630 vs. Swiss-Prot
Match: Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-07
Identity = 25/72 (34.72%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 6   VTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEE 59
           V +LK+ + +K++N+W+VP+W+P                   LST+LD  K  S+ G +E
Sbjct: 96  VAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKE 155

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BLAST of Cucsa.084630 vs. TrEMBL
Match: A0A0A0K7F4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390080 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.3e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE 60
          MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE
Sbjct: 1  MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE 60

[Close]

BLAST of Cucsa.084630 vs. TrEMBL
Match: A0A0A0LLM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G213970 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.9e-17
Identity = 49/76 (64.47%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 4   FSVTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGW 61
           F VTLLKIFQAIKEQNLW+VPIW+P                   LSTSLD EKK SVLGW
Sbjct: 102 FGVTLLKIFQAIKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGW 161

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BLAST of Cucsa.084630 vs. TrEMBL
Match: A0A068UA19_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020082001 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 1


Query: 6   VTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEE 61
           V LL++F  +KEQNLW+VPIW+P                   LSTS D +++ S LG+EE
Sbjct: 113 VALLQVFSIMKEQNLWDVPIWLPFLTTFLTFGASALGIAYGTLSTSWDAQREGSFLGFEE 172

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BLAST of Cucsa.084630 vs. TrEMBL
Match: M5X516_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026735mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-09
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1


Query: 9   LKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEEKQK 61
           L +F+ IKE++LW+VP+W+P                   LSTS D EKK S+LG+EE Q 
Sbjct: 106 LNVFEVIKEKHLWDVPLWLPFLTTLLTFGSSTLGIAYGALSTSWDAEKKGSILGFEEAQS 165

[Close]

BLAST of Cucsa.084630 vs. TrEMBL
Match: E0CUU2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01260 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.5e-08
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 6   VTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEE 59
           V LL +F A+K+Q+LW+VP+W+P                   LSTS D EKK S+LG EE
Sbjct: 107 VALLNLFGAVKDQHLWDVPVWLPFLTTLIAFGASALGIAYGTLSTSWDAEKKGSLLGLEE 166

[Close]

BLAST of Cucsa.084630 vs. TAIR10
Match: AT5G52780.1 (AT5G52780.1 Protein of unknown function (DUF3464))

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-08
Identity = 25/72 (34.72%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 6   VTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEE 59
           V +LK+ + +K++N+W+VP+W+P                   LST+LD  K  S+ G +E
Sbjct: 96  VAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKE 155

[Close]

BLAST of Cucsa.084630 vs. NCBI nr
Match: gi|700189596|gb|KGN44829.1| (hypothetical protein Csa_7G390080 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE 60
          MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE
Sbjct: 1  MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE 60

[Close]

BLAST of Cucsa.084630 vs. NCBI nr
Match: gi|449465705|ref|XP_004150568.1| (PREDICTED: uncharacterized protein PAM68-like [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 9.9e-17
Identity = 49/76 (64.47%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 4   FSVTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGW 61
           F VTLLKIFQAIKEQNLW+VPIW+P                   LSTSLD EKK SVLGW
Sbjct: 102 FGVTLLKIFQAIKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGW 161

[Close]

BLAST of Cucsa.084630 vs. NCBI nr
Match: gi|659077646|ref|XP_008439311.1| (PREDICTED: uncharacterized protein PAM68-like [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-16
Identity = 48/76 (63.16%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 4   FSVTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGW 61
           F VTLLKIFQAIKEQNLW+VPIW+P                   LSTSLD EKK SV+GW
Sbjct: 106 FGVTLLKIFQAIKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVMGW 165

[Close]

BLAST of Cucsa.084630 vs. NCBI nr
Match: gi|694400924|ref|XP_009375538.1| (PREDICTED: uncharacterized protein PAM68-like [Pyrus x bretschneideri])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 1


Query: 9   LKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEEKQK 61
           LK+F A+KE++LW+VP+W+P                   LSTS D EKK SVLG EE Q 
Sbjct: 108 LKVFDAVKEKHLWDVPLWLPFLTTLLTFGASALGIAYGALSTSWDAEKKGSVLGLEEAQS 167

[Close]

BLAST of Cucsa.084630 vs. NCBI nr
Match: gi|658037350|ref|XP_008354247.1| (PREDICTED: uncharacterized protein PAM68-like [Malus domestica])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 1


Query: 9   LKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEEKQK 61
           LK+F A+KE++LW+VP+W+P                   LSTS D EKK SVLG EE Q 
Sbjct: 108 LKVFDAVKEKHLWDVPLWLPFLTTLLTFGASALGIAYGALSTSWDAEKKGSVLGLEEAQS 167

The following BLAST results are available for this feature:

BLAST of Cucsa.084630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5278_ARATH	2.4e-07	34.72	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=...	[more]

BLAST of Cucsa.084630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7F4_CUCSA	7.3e-27	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390080 PE=4 SV=1	[more]
A0A0A0LLM4_CUCSA	6.9e-17	64.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G213970 PE=4 SV=1	[more]
A0A068UA19_COFCA	2.4e-09	45.95	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020082001 PE=4 SV=1	[more]
M5X516_PRUPE	4.0e-09	46.48	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026735mg PE=4 SV=1	[more]
E0CUU2_VITVI	4.5e-08	44.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01260 PE=4 SV=...	[more]

BLAST of Cucsa.084630 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52780.1	1.4e-08	34.72	Protein of unknown function (DUF3464)	[more]

BLAST of Cucsa.084630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189596\|gb\|KGN44829.1\|	1.1e-26	100.00	hypothetical protein Csa_7G390080 [Cucumis sativus]	[more]
gi\|449465705\|ref\|XP_004150568.1\|	9.9e-17	64.47	PREDICTED: uncharacterized protein PAM68-like [Cucumis sativus]	[more]
gi\|659077646\|ref\|XP_008439311.1\|	1.7e-16	63.16	PREDICTED: uncharacterized protein PAM68-like [Cucumis melo]	[more]
gi\|694400924\|ref\|XP_009375538.1\|	1.2e-09	49.30	PREDICTED: uncharacterized protein PAM68-like [Pyrus x bretschneideri]	[more]
gi\|658037350\|ref\|XP_008354247.1\|	1.2e-09	49.30	PREDICTED: uncharacterized protein PAM68-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.084630.1	Cucsa.084630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34575	FAMILY NOT NAMED	coord: 6..60 score: 3.6
None	No IPR available	PANTHER	PTHR34575:SF1	SUBFAMILY NOT NAMED	coord: 6..60 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.084630	Csa7G390080	Cucumber (Chinese Long) v2	cgycuB085
Cucsa.084630	CsaV3_7G028240	Cucumber (Chinese Long) v3	cgycucB087

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.084630	Cucurbita maxima (Rimu)	cgycmaB0157
Cucsa.084630	Cucurbita maxima (Rimu)	cgycmaB0158
Cucsa.084630	Cucurbita moschata (Rifu)	cgycmoB0152
Cucsa.084630	Cucurbita moschata (Rifu)	cgycmoB0153
Cucsa.084630	Wild cucumber (PI 183967)	cgycpiB088
Cucsa.084630	Melon (DHL92) v3.5.1	cgymeB093
Cucsa.084630	Watermelon (Charleston Gray)	cgywcgB091
Cucsa.084630	Watermelon (97103) v1	cgywmB094
Cucsa.084630	Cucurbita pepo (Zucchini)	cgycpeB0151
Cucsa.084630	Cucurbita pepo (Zucchini)	cgycpeB0153
Cucsa.084630	Bottle gourd (USVL1VR-Ls)	cgylsiB090
Cucsa.084630	Watermelon (97103) v2	cgywmbB089