Csa7G390080 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G390080
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 14586794 .. 14587048 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAATTCAGTGTGACATTGTTGAAGATTTTTCAAGCGATCAAGGAGCAAAACCTTTGGAATGTGCCTATTTGGATGCCGTTATCGACGAGTTTAGATGGGGAGAAGAAAAGATCCGTGTTGGGATGGGAAGAGAAGCAAAAGAATTGGATTGAAATGCAGAAGGAGGAAGATGAAGGTCGACACCGAGGAAATTTATTCGACTCTCTATTTTTTACAGAAAATCGAAGATACGATAAGATGAATAAGTAA

mRNA sequence

ATGGTGGAATTCAGTGTGACATTGTTGAAGATTTTTCAAGCGATCAAGGAGCAAAACCTTTGGAATGTGCCTATTTGGATGCCGTTATCGACGAGTTTAGATGGGGAGAAGAAAAGATCCGTGTTGGGATGGGAAGAGAAGCAAAAGAATTGGATTGAAATGCAGAAGGAGGAAGATGAAGAAAATCGAAGATACGATAAGATGAATAAGTAA

Coding sequence (CDS)

ATGGTGGAATTCAGTGTGACATTGTTGAAGATTTTTCAAGCGATCAAGGAGCAAAACCTTTGGAATGTGCCTATTTGGATGCCGTTATCGACGAGTTTAGATGGGGAGAAGAAAAGATCCGTGTTGGGATGGGAAGAGAAGCAAAAGAATTGGATTGAAATGCAGAAGGAGGAAGATGAAGAAAATCGAAGATACGATAAGATGAATAAGTAA

Protein sequence

MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDEENRRYDKMNK*
Homology
[Close]
BLAST of Csa7G390080 vs. Swiss-Prot
Match: Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-07
Identity = 25/72 (34.72%), Postives = 40/72 (55.56%), Query Frame = 1 

Query: 6   VTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEE 59
           V +LK+ + +K++N+W+VP+W+P                   LST+LD  K  S+ G +E
Sbjct: 96  VAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKE 155

[Close]
BLAST of Csa7G390080 vs. TrEMBL
Match: A0A0A0K7F4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390080 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.6e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE 60
          MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE
Sbjct: 1  MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE 60

Query: 61 ENRRYDKMNK 71
          ENRRYDKMNK
Sbjct: 61 ENRRYDKMNK 70

[Close]
BLAST of Csa7G390080 vs. TrEMBL
Match: A0A0A0LLM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G213970 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-17
Identity = 50/79 (63.29%), Postives = 53/79 (67.09%), Query Frame = 1 

Query: 4   FSVTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGW 63
           F VTLLKIFQAIKEQNLW+VPIW+P                   LSTSLD EKK SVLGW
Sbjct: 102 FGVTLLKIFQAIKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGW 161

[Close]
BLAST of Csa7G390080 vs. TrEMBL
Match: M5X516_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026735mg PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.3e-10
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 1 

Query: 9   LKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEEKQK 65
           L +F+ IKE++LW+VP+W+P                   LSTS D EKK S+LG+EE Q 
Sbjct: 106 LNVFEVIKEKHLWDVPLWLPFLTTLLTFGSSTLGIAYGALSTSWDAEKKGSILGFEEAQS 165

[Close]
BLAST of Csa7G390080 vs. TrEMBL
Match: A0A068UA19_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020082001 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.3e-10
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 6   VTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEE 62
           V LL++F  +KEQNLW+VPIW+P                   LSTS D +++ S LG+EE
Sbjct: 113 VALLQVFSIMKEQNLWDVPIWLPFLTTFLTFGASALGIAYGTLSTSWDAQREGSFLGFEE 172

[Close]
BLAST of Csa7G390080 vs. TrEMBL
Match: W9RS46_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014227 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-08
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1 

Query: 9   LKIFQAIKEQNLWNVPIWMPL-------------------STSLDGEKKRSVLGWEEKQK 63
           LK F  +KE++LW++P+W+PL                   STS D EK+ S LG EE Q+
Sbjct: 111 LKFFDVVKERHLWDIPMWLPLLTAFFMFSVSALGLAYAALSTSWDAEKRGSFLGLEEVQQ 170

[Close]
BLAST of Csa7G390080 vs. TAIR10
Match: AT5G52780.1 (AT5G52780.1 Protein of unknown function (DUF3464))

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-08
Identity = 25/72 (34.72%), Postives = 40/72 (55.56%), Query Frame = 1 

Query: 6   VTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEE 59
           V +LK+ + +K++N+W+VP+W+P                   LST+LD  K  S+ G +E
Sbjct: 96  VAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKE 155

[Close]
BLAST of Csa7G390080 vs. NCBI nr
Match: gi|700189596|gb|KGN44829.1| (hypothetical protein Csa_7G390080 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 5.1e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE 60
          MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE
Sbjct: 1  MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE 60

Query: 61 ENRRYDKMNK 71
          ENRRYDKMNK
Sbjct: 61 ENRRYDKMNK 70

[Close]
BLAST of Csa7G390080 vs. NCBI nr
Match: gi|449465705|ref|XP_004150568.1| (PREDICTED: uncharacterized protein PAM68-like [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-17
Identity = 50/79 (63.29%), Postives = 53/79 (67.09%), Query Frame = 1 

Query: 4   FSVTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGW 63
           F VTLLKIFQAIKEQNLW+VPIW+P                   LSTSLD EKK SVLGW
Sbjct: 102 FGVTLLKIFQAIKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGW 161

[Close]
BLAST of Csa7G390080 vs. NCBI nr
Match: gi|659077646|ref|XP_008439311.1| (PREDICTED: uncharacterized protein PAM68-like [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-17
Identity = 49/79 (62.03%), Postives = 54/79 (68.35%), Query Frame = 1 

Query: 4   FSVTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGW 63
           F VTLLKIFQAIKEQNLW+VPIW+P                   LSTSLD EKK SV+GW
Sbjct: 106 FGVTLLKIFQAIKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVMGW 165

[Close]
BLAST of Csa7G390080 vs. NCBI nr
Match: gi|694400924|ref|XP_009375538.1| (PREDICTED: uncharacterized protein PAM68-like [Pyrus x bretschneideri])

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-10
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 9   LKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEEKQK 63
           LK+F A+KE++LW+VP+W+P                   LSTS D EKK SVLG EE Q 
Sbjct: 108 LKVFDAVKEKHLWDVPLWLPFLTTLLTFGASALGIAYGALSTSWDAEKKGSVLGLEEAQS 167

[Close]
BLAST of Csa7G390080 vs. NCBI nr
Match: gi|658037350|ref|XP_008354247.1| (PREDICTED: uncharacterized protein PAM68-like [Malus domestica])

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-10
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 9   LKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEEKQK 63
           LK+F A+KE++LW+VP+W+P                   LSTS D EKK SVLG EE Q 
Sbjct: 108 LKVFDAVKEKHLWDVPLWLPFLTTLLTFGASALGIAYGALSTSWDAEKKGSVLGLEEAQS 167

The following BLAST results are available for this feature:
BLAST of Csa7G390080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y5278_ARATH2.8e-0734.72Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=... [more]
BLAST of Csa7G390080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7F4_CUCSA3.6e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390080 PE=4 SV=1[more]
A0A0A0LLM4_CUCSA3.6e-1763.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G213970 PE=4 SV=1[more]
M5X516_PRUPE7.3e-1045.33Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026735mg PE=4 SV=1[more]
A0A068UA19_COFCA7.3e-1046.67Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020082001 PE=4 SV=1[more]
W9RS46_9ROSA1.8e-0843.84Uncharacterized protein OS=Morus notabilis GN=L484_014227 PE=4 SV=1[more]
BLAST of Csa7G390080 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G52780.11.6e-0834.72 Protein of unknown function (DUF3464)[more]
BLAST of Csa7G390080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189596|gb|KGN44829.1|5.1e-33100.00hypothetical protein Csa_7G390080 [Cucumis sativus][more]
gi|449465705|ref|XP_004150568.1|5.2e-1763.29PREDICTED: uncharacterized protein PAM68-like [Cucumis sativus][more]
gi|659077646|ref|XP_008439311.1|6.7e-1762.03PREDICTED: uncharacterized protein PAM68-like [Cucumis melo][more]
gi|694400924|ref|XP_009375538.1|2.7e-1049.32PREDICTED: uncharacterized protein PAM68-like [Pyrus x bretschneideri][more]
gi|658037350|ref|XP_008354247.1|2.7e-1049.32PREDICTED: uncharacterized protein PAM68-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G390080.1Csa7G390080.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34575FAMILY NOT NAMEDcoord: 6..69
score: 4.3
NoneNo IPR availablePANTHERPTHR34575:SF1SUBFAMILY NOT NAMEDcoord: 6..69
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G390080Cucsa.084630Cucumber (Gy14) v1cgycuB085
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G390080Cucurbita maxima (Rimu)cmacuB388
Csa7G390080Cucurbita maxima (Rimu)cmacuB914
Csa7G390080Cucurbita moschata (Rifu)cmocuB378
Csa7G390080Cucurbita moschata (Rifu)cmocuB900
Csa7G390080Melon (DHL92) v3.5.1cumeB522
Csa7G390080Cucurbita pepo (Zucchini)cpecuB161
Csa7G390080Cucurbita pepo (Zucchini)cpecuB344
Csa7G390080Bottle gourd (USVL1VR-Ls)culsiB503
Csa7G390080Cucumber (Gy14) v2cgybcuB323