CsaV3_7G028240 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G028240
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionSterol regulatory element-binding protein cleavage-activating protein, putative
Locationchr7 : 17796700 .. 17796954 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAATTCAGTGTGACATTGTTGAAGATTTTTCAAGCGATCAAGGAGCAAAACCTTTGGAATGTGCCTATTTGGATGCCGTTATCGACGAGTTTAGATGGGGAGAAGAAAAGATCCGTGTTGGGATGGGAAGAGAAGCAAAAGAATTGGATTGAAATGCAGAAGGAGGAAGATGAAGGTCGACACCGAGGAAATTTATTCGACTCTCTATTTTTTACAGAAAATCGAAGATACGATAAGATGAATAAGTAA

mRNA sequence

ATGGTGGAATTCAGTGTGACATTGTTGAAGATTTTTCAAGCGATCAAGGAGCAAAACCTTTGGAATGTGCCTATTTGGATGCCGTTATCGACGAGTTTAGATGGGGAGAAGAAAAGATCCGTGTTGGGATGGGAAGAGAAGCAAAAGAATTGGATTGAAATGCAGAAGGAGGAAGATGAAGAAAATCGAAGATACGATAAGATGAATAAGTAA

Coding sequence (CDS)

ATGGTGGAATTCAGTGTGACATTGTTGAAGATTTTTCAAGCGATCAAGGAGCAAAACCTTTGGAATGTGCCTATTTGGATGCCGTTATCGACGAGTTTAGATGGGGAGAAGAAAAGATCCGTGTTGGGATGGGAAGAGAAGCAAAAGAATTGGATTGAAATGCAGAAGGAGGAAGATGAAGAAAATCGAAGATACGATAAGATGAATAAGTAA

Protein sequence

MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDEENRRYDKMNK
Homology
[Close]
BLAST of CsaV3_7G028240 vs. NCBI nr
Match: KGN44829.1 (hypothetical protein Csa_7G390080 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE 60
          MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE
Sbjct: 1  MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE 60

Query: 61 ENRRYDKMNK 71
          ENRRYDKMNK
Sbjct: 61 ENRRYDKMNK 70

[Close]
BLAST of CsaV3_7G028240 vs. NCBI nr
Match: XP_004150568.1 (PREDICTED: uncharacterized protein PAM68-like [Cucumis sativus] >KGN61652.1 hypothetical protein Csa_2G213970 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-15
Identity = 50/79 (63.29%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 4   FSVTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGW 63
           F VTLLKIFQAIKEQNLW+VPIW+P                   LSTSLD EKK SVLGW
Sbjct: 102 FGVTLLKIFQAIKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGW 161

[Close]
BLAST of CsaV3_7G028240 vs. NCBI nr
Match: XP_008439311.1 (PREDICTED: uncharacterized protein PAM68-like [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.5e-15
Identity = 49/79 (62.03%), Postives = 54/79 (68.35%), Query Frame = 0 

Query: 4   FSVTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGW 63
           F VTLLKIFQAIKEQNLW+VPIW+P                   LSTSLD EKK SV+GW
Sbjct: 106 FGVTLLKIFQAIKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVMGW 165

[Close]
BLAST of CsaV3_7G028240 vs. NCBI nr
Match: XP_022140980.1 (uncharacterized protein PAM68-like [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 0 

Query: 4   FSVTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGW 63
           F V LLKIF+ IKEQ +W+VPIW+P                   LS SLD EK+ S+ GW
Sbjct: 106 FGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGW 165

[Close]
BLAST of CsaV3_7G028240 vs. NCBI nr
Match: XP_022944901.1 (uncharacterized protein PAM68-like [Cucurbita moschata])

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 0 

Query: 4   FSVTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGW 63
           F VTL+KI +A+ EQ LW+VPIW+P                   LSTSLD EK+ ++ GW
Sbjct: 108 FGVTLVKILEAVHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGW 167

[Close]
BLAST of CsaV3_7G028240 vs. TAIR10
Match: AT5G52780.1 (Protein of unknown function (DUF3464))

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-07
Identity = 25/72 (34.72%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 6   VTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEE 59
           V +LK+ + +K++N+W+VP+W+P                   LST+LD  K  S+ G +E
Sbjct: 96  VAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKE 155

[Close]
BLAST of CsaV3_7G028240 vs. Swiss-Prot
Match: sp|Q9LTD9|Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-06
Identity = 25/72 (34.72%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 6   VTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEE 59
           V +LK+ + +K++N+W+VP+W+P                   LST+LD  K  S+ G +E
Sbjct: 96  VAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKE 155

[Close]
BLAST of CsaV3_7G028240 vs. TrEMBL
Match: tr|A0A0A0K7F4|A0A0A0K7F4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390080 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.6e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE 60
          MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE
Sbjct: 1  MVEFSVTLLKIFQAIKEQNLWNVPIWMPLSTSLDGEKKRSVLGWEEKQKNWIEMQKEEDE 60

Query: 61 ENRRYDKMNK 71
          ENRRYDKMNK
Sbjct: 61 ENRRYDKMNK 70

[Close]
BLAST of CsaV3_7G028240 vs. TrEMBL
Match: tr|A0A0A0LLM4|A0A0A0LLM4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G213970 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-15
Identity = 50/79 (63.29%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 4   FSVTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGW 63
           F VTLLKIFQAIKEQNLW+VPIW+P                   LSTSLD EKK SVLGW
Sbjct: 102 FGVTLLKIFQAIKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGW 161

[Close]
BLAST of CsaV3_7G028240 vs. TrEMBL
Match: tr|A0A1S3AZ57|A0A1S3AZ57_CUCME (uncharacterized protein PAM68-like OS=Cucumis melo OX=3656 GN=LOC103484134 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 49/79 (62.03%), Postives = 54/79 (68.35%), Query Frame = 0 

Query: 4   FSVTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGW 63
           F VTLLKIFQAIKEQNLW+VPIW+P                   LSTSLD EKK SV+GW
Sbjct: 106 FGVTLLKIFQAIKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVMGW 165

[Close]
BLAST of CsaV3_7G028240 vs. TrEMBL
Match: tr|A0A2P6SNE7|A0A2P6SNE7_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0378471 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-08
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 6   VTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEE 61
           +  L +F+ IKE++LW+VPIW+P                   LSTS D EKK S+LG+EE
Sbjct: 103 IAFLNVFEFIKEKHLWDVPIWLPFLTTLLTFGTSALGIAYGALSTSWDAEKKGSILGFEE 162

[Close]
BLAST of CsaV3_7G028240 vs. TrEMBL
Match: tr|A0A068UA19|A0A068UA19_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00020082001 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 6   VTLLKIFQAIKEQNLWNVPIWMP-------------------LSTSLDGEKKRSVLGWEE 62
           V LL++F  +KEQNLW+VPIW+P                   LSTS D +++ S LG+EE
Sbjct: 113 VALLQVFSIMKEQNLWDVPIWLPFLTTFLTFGASALGIAYGTLSTSWDAQREGSFLGFEE 172

The following BLAST results are available for this feature:
BLAST of CsaV3_7G028240 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44829.15.5e-31100.00hypothetical protein Csa_7G390080 [Cucumis sativus][more]
XP_004150568.11.9e-1563.29PREDICTED: uncharacterized protein PAM68-like [Cucumis sativus] >KGN61652.1 hypo... [more]
XP_008439311.12.5e-1562.03PREDICTED: uncharacterized protein PAM68-like [Cucumis melo][more]
XP_022140980.11.7e-1151.90uncharacterized protein PAM68-like [Momordica charantia][more]
XP_022944901.11.7e-1150.63uncharacterized protein PAM68-like [Cucurbita moschata][more]
BLAST of CsaV3_7G028240 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G52780.11.0e-0734.72Protein of unknown function (DUF3464)[more]
BLAST of CsaV3_7G028240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LTD9|Y5278_ARATH1.9e-0634.72Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 ... [more]
BLAST of CsaV3_7G028240 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K7F4|A0A0A0K7F4_CUCSA3.6e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390080 PE=4 SV=1[more]
tr|A0A0A0LLM4|A0A0A0LLM4_CUCSA1.3e-1563.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G213970 PE=4 SV=1[more]
tr|A0A1S3AZ57|A0A1S3AZ57_CUCME1.6e-1562.03uncharacterized protein PAM68-like OS=Cucumis melo OX=3656 GN=LOC103484134 PE=4 ... [more]
tr|A0A2P6SNE7|A0A2P6SNE7_ROSCH1.5e-0845.95Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0378471 PE=4... [more]
tr|A0A068UA19|A0A068UA19_COFCA1.9e-0846.67Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00020082001 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021855PAM68-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G028240.1CsaV3_7G028240.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34575:SF1SUBFAMILY NOT NAMEDcoord: 29..62
NoneNo IPR availablePANTHERPTHR34575:SF1SUBFAMILY NOT NAMEDcoord: 5..33
IPR021855PAM68-likePANTHERPTHR34575FAMILY NOT NAMEDcoord: 29..62
IPR021855PAM68-likePANTHERPTHR34575FAMILY NOT NAMEDcoord: 5..33

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G028240Cucsa.084630Cucumber (Gy14) v1cgycucB087
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G028240Cucumber (Gy14) v2cgybcucB347
CsaV3_7G028240Cucurbita maxima (Rimu)cmacucB0462
CsaV3_7G028240Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G028240Cucurbita moschata (Rifu)cmocucB0455
CsaV3_7G028240Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G028240Cucurbita pepo (Zucchini)cpecucB0423
CsaV3_7G028240Wild cucumber (PI 183967)cpicucB414
CsaV3_7G028240Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G028240Melon (DHL92) v3.5.1cucmeB538