Cucsa.079770 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.079770
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	CDT1 A, putative
Location	scaffold00793 : 2621694 .. 2623808 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAAAAGAAGAGACGTTCACCGGAGGCACCAAGTTGAAGGAACTGTATAAGCGGAAGGTTCAAGTTTACGTTTTTTTTTAACGTTGTTCTGTTTTTAGGTTGAAGAAAAGGAAAAAGAAATAGGAAATGGGGAAATTAAATAAGGGTATTTCCGTCATTTCACACCAAATTTATCCACCTTTTTTATCATCAATCCTAAAACTCTTTTTCTACCCCATTTTTGGCCTAGTTTTGGCAATTTCTGGTACTTATTCAGCTTCGTTCTTCCCAGTTCACAAACACCCAAACAGTTTCCCCTTTATTCCCGCCAAATCCATTCCATTTGTAAACCCCTTAATCACCAATTTCCCTTCTATCACTCCATAACAATGGCGGACGCTTCAAACGAAGTTTCTTCTTCATCATCATCAACTTTACCCTTCAAATCGAACAAACCTTTGCGTTCCAACTCCAAATCCTTACTTCAGGATCCACAATCCTTGAGCTCCAAGACCCCGGAAAAGCCTGCGAAGCTCTCTACCAGAACTAGAAACTGTAAGGTTTCACTTTCGATCAAAGCGATTAAACGAGCTACTCAGAGTGTCCCTGAATCCAATCCTCTGTTGCCTCTTGATCTGCCTACTGAAGAGAGTAAATCGGTTAGAAGACAAATAGATTTGTTGTCGAATGAAAGTCAATCGGTTGATAATAAGTCCAAGAAATTGCCTGAGAAGTAAGTCTTTTTGTTTCTCGATCTTGAAATGTGACTTATTGATGGTTGGCTGCTCTTTTAGATCTGTTTTGAATGTTTCGTAAATGAGTCTTGTTATTATTCTGGTGTTTGCATATTTGAGATGCTTTGTAAGCTTTTCTATAGTTCGGATTCTGCAATGCGGTTGTTGCGATTTAAAGGTGTTGCATCCAACTTCTCTAACGTTTGCCCTAAGATCGAAGCCCTCACTGATAGGTACTTATTCTGCCTTCCATATTGTCTTTTCCTTTCCATCGATTTATATGTTGATAGTAACTACAGGTTAATTTAGAATTTTAATCTGACTGGCCGCTTAAGTAACCGTGAAGAAGTTTGTAAAATTTGTTATTTCTTTTAAATGCAATCGTGGTTGTTATGGCATACGAAGTTAGATTGACGATATTGTGATGACTGTTTGAATCAAATCGTTCTAGTTCCAGTTAATTTTGTGGCATTCACTTCTTAGATTTTTTAAATGACTCGAAGAGTTCCTCTGTTTTCTTATTCTGAATTTGATGGCTATGAGCGCAAGAGGTTTCCATGTCGTCATTTGGCTCAATTCAAGTTTATTTTACCTGAAGCAATTGTTCTCAAGAAGGTTGTGGTCTATGATGAGAGGACCAGTTGTATGAAGCCAGATCTTCACATATCTTTCAATTTTGGTGTTCTAGAGAATAAGGAGGACCAATATATGCAACTGAGGAAGTTGTTTCGGGCACGACTTTCAGAATTTGTGAGTTCCCATCGAGAGGTATGCCACCATTTTCCTTCTATGATTCGTAGATTTAGTGTTTTAACTGTCTTTGTGCTCACGAATCCTAGAAGGTTGGTTCTTTCTATATGAAATGTGAAAACCCGAGGTCCCTATATCTTTGCTAGTACTTGCTCTGTTTGCAAGTGCAAGGAGGTGTAGCATTCCGGTGATAGAAGTTTGTTGTTATCATTTGCATGATGGCCACCAAGGTTGCTTGATTTCTCTATTTCATTTTGGAAGTCATTATTTTTCTTATATTTTGGATGTACTGTTTCCTGTTCGTTGAGAGTTTCTATGCTCTAATACATGCTTCTATATTTAGAGTGATGATGTTCCAAAGGATTTGCTGCCAAATCCATTCAATTTCCGAAGCCAAGAAGTTGTCGCAAAATCCAACTTGCTATCCCCTATCAAGACATCAATTGAGCAATTGGCCCCTGAGCAACCAATGCCATCAATAGAAGGGATTTCTTTTAACCATCATTCAGAAGAAAATCAAGGTTTCCGGATAGTTAAATCTATCATGCATGTAACTGGCCCGACTAAGCAGAAGGAATTCATAGGGTTATCTCATTTTTCACCATCTTTTAGTCGCCGTTTCTCTCAAAAAGTTGTTGACACATAA

mRNA sequence

ATGGATGGAAAAGAAGAGACGTTCACCGGAGGCACCAAGTTGAAGGAACTcttcgttctTCCCAGTTCACAAACACCCAAACAGTTTCCCCTTTATTCCCGCCAAATCCATTCCATTTGTAAACCCCTTAATCACCAATTTCCCTTCTATCACTCCATAACAATGGCGGACGCTTCAAACGAAGTTTCTTCTTCATCATCATCAACTTTACCCTTCAAATCGAACAAACCTTTGCGTTCCAACTCCAAATCCTTACTTCAGGATCCACAATCCTTGAGCTCCAAGACCCCGGAAAAGCCTGCGAAGCTCTCTACCAGAACTAGAAACTGTAAGGTTTCACTTTCGATCAAAGCGATTAAACGAGCTACTCAGAGTGTCCCTGAATCCAATCCTCTGTTGCCTCTTGATCTGCCTACTGAAGAGAGTAAATCGATGCTTTGTAAGCTTTTCTATAGTTCGGATTCTGCAATGCGGTTGTTGCGATTTAAAGGTGTTGCATCCAACTTCTCTAACGTTTGCCCTAAGATCGAAGCCCTCACTGATAGGTTTCCATGTCGTCATTTGGCTCAATTCAAGTTTATTTTACCTGAAGCAATTGTTCTCAAGAAGGTTGTGGTCTATGATGAGAGGACCAGTTGTATGAAGCCAGATCTTCACATATCTTTCAATTTTGGTGTTCTAGAGAATAAGGAGGACCAATATATGCAACTGAGGAAGTTGTTTCGGGCACGACTTTCAGAATTTGTGAGTTCCCATCGAGAGAGTGATGATGTTCCAAAGGATTTGCTGCCAAATCCATTCAATTTCCGAAGCCAAGAAGTTGTCGCAAAATCCAACTTGCTATCCCCTATCAAGACATCAATTGAGCAATTGGCCCCTGAGCAACCAATGCCATCAATAGAAGGGATTTCTTTTAACCATCATTCAGAAGAAAATCAAGGTTTCCGGATAGTTAAATCTATCATGCATGTAACTGGCCCGACTAAGCAGAAGGAATTCATAGGGTTATCTCATTTTTCACCATCTTTTAGTCGCCGTTTCTCTCAAAAAGTTGTTGACACATAA

Coding sequence (CDS)

ATGGATGGAAAAGAAGAGACGTTCACCGGAGGCACCAAGTTGAAGGAACTCTTCGTTCTTCCCAGTTCACAAACACCCAAACAGTTTCCCCTTTATTCCCGCCAAATCCATTCCATTTGTAAACCCCTTAATCACCAATTTCCCTTCTATCACTCCATAACAATGGCGGACGCTTCAAACGAAGTTTCTTCTTCATCATCATCAACTTTACCCTTCAAATCGAACAAACCTTTGCGTTCCAACTCCAAATCCTTACTTCAGGATCCACAATCCTTGAGCTCCAAGACCCCGGAAAAGCCTGCGAAGCTCTCTACCAGAACTAGAAACTGTAAGGTTTCACTTTCGATCAAAGCGATTAAACGAGCTACTCAGAGTGTCCCTGAATCCAATCCTCTGTTGCCTCTTGATCTGCCTACTGAAGAGAGTAAATCGATGCTTTGTAAGCTTTTCTATAGTTCGGATTCTGCAATGCGGTTGTTGCGATTTAAAGGTGTTGCATCCAACTTCTCTAACGTTTGCCCTAAGATCGAAGCCCTCACTGATAGGTTTCCATGTCGTCATTTGGCTCAATTCAAGTTTATTTTACCTGAAGCAATTGTTCTCAAGAAGGTTGTGGTCTATGATGAGAGGACCAGTTGTATGAAGCCAGATCTTCACATATCTTTCAATTTTGGTGTTCTAGAGAATAAGGAGGACCAATATATGCAACTGAGGAAGTTGTTTCGGGCACGACTTTCAGAATTTGTGAGTTCCCATCGAGAGAGTGATGATGTTCCAAAGGATTTGCTGCCAAATCCATTCAATTTCCGAAGCCAAGAAGTTGTCGCAAAATCCAACTTGCTATCCCCTATCAAGACATCAATTGAGCAATTGGCCCCTGAGCAACCAATGCCATCAATAGAAGGGATTTCTTTTAACCATCATTCAGAAGAAAATCAAGGTTTCCGGATAGTTAAATCTATCATGCATGTAACTGGCCCGACTAAGCAGAAGGAATTCATAGGGTTATCTCATTTTTCACCATCTTTTAGTCGCCGTTTCTCTCAAAAAGTTGTTGACACATAA

Protein sequence

MDGKEETFTGGTKLKELFVLPSSQTPKQFPLYSRQIHSICKPLNHQFPFYHSITMADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSLSIKAIKRATQSVPESNPLLPLDLPTEESKSMLCKLFYSSDSAMRLLRFKGVASNFSNVCPKIEALTDRFPCRHLAQFKFILPEAIVLKKVVVYDERTSCMKPDLHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLSHFSPSFSRRFSQKVVDT*

Homology

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BLAST of Cucsa.079770 vs. Swiss-Prot
Match: CDT1A_ARATH (CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.9e-29
Identity = 93/268 (34.70%), Postives = 143/268 (53.36%), Query Frame = 1


Query: 66  SSSTLPFKSNKPL-----RSNSKSLLQDPQSLSSKTPEKPAK---LSTRTRNCKVSLSIK 125
           SS ++PFKS K L      S S++   +P S++  TPEKP +     +R R+  +S+  K
Sbjct: 6   SSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVALSV--K 65

Query: 126 AIKRATQSVPESNPLLPLDLPTE--------------------------ESKSMLCKLFY 185
            I++A  S   S   +     +                           E    L K F 
Sbjct: 66  EIRQAAGSRRRSEDPVASSAKSRLFFDSSSSSPSKRKSSNKNAEKEKLPEKYENLGKFFE 125

Query: 186 SSDSAMRLLRFKGVASNFSNVCPKIEALTDRFPC-RHLAQFKFILPEAIVLKKVVVYDER 245
           + D++M L + +G    FSN+  +IE LT+R  C  HLAQ K ILPEAI +K+V+++DE 
Sbjct: 126 ALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILPEAIEIKRVLIHDET 185

Query: 246 TSCMKPDLHISFNFGVLE-----NKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPN 293
           T CMKPDLH++ N   +E       E + + LRK+FRARL++FV +H + D+VP++ LP 
Sbjct: 186 TCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRARLADFVKAHPQGDEVPEEPLPE 245

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BLAST of Cucsa.079770 vs. Swiss-Prot
Match: CDT1B_ARATH (CDT1-like protein b OS=Arabidopsis thaliana GN=CDT1B PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.1e-26
Identity = 77/186 (41.40%), Postives = 109/186 (58.60%), Query Frame = 1


Query: 91  SLSSKTPEKPAKLSTRTRNCKVSLSIKAIKR---ATQSVPESNPLLPLDLPTEESKSMLC 150
           S S    EKP  +S    + K    IK +KR   ++   PES   LP      E   +L 
Sbjct: 3   SSSKIDSEKPVMVSESLFSTKTP--IKTVKRQIFSSSPKPESVIKLP------ERFEILE 62

Query: 151 KLFYSSDSAMRLLRFKGVASNFSNVCPKIEALTDR-FPCRHLAQFKFILPEAIVLKKVVV 210
           + F   D+A+RLL+ KG ++ ++N+CPKIE LT+R F   HLAQ K I PEAI LK+V+ 
Sbjct: 63  EFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNRIFSYDHLAQMKHIYPEAIELKRVLK 122

Query: 211 YDERTSCMKPDLHISFNFGVLENKE----DQYMQLRKLFRARLSEFVSSHRESDDVPKDL 269
           + E T CMKP LHI  N   +  ++     +YM+LRK+F ++L +F  +H   D++PK+L
Sbjct: 123 FVEDTCCMKPRLHIKLNTDAIVVEDTICGTKYMELRKVFHSKLVDFRKAH-PKDEIPKEL 179

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BLAST of Cucsa.079770 vs. TrEMBL
Match: A0A0A0L7I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G394670 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 2.0e-92
Identity = 205/333 (61.56%), Postives = 229/333 (68.77%), Query Frame = 1


Query: 55  MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 114
           MADASN++SS SS TLPFKS K L SNS SLL+DPQSLSS+TPEKP +   R R  KV+L
Sbjct: 1   MADASNKISSRSS-TLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVE---RNRKRKVAL 60

Query: 115 SIKAIKRATQSVPESNPLLPLDLPT--------------EESKSMLCKLFYSSDSAMRLL 174
           SIK +K+A QSV ESN  L  DL T               ES+S   K    + S     
Sbjct: 61  SIKEVKQAAQSVHESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPE 120

Query: 175 RFK-------------------GVASNFSNVCPKIEALTD-RFPCRHLAQFKFILPEAIV 234
           +F+                   GVASNFS+VC KIE LTD RF   HLAQ KFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSSVCTKIEVLTDRRFSYSHLAQLKFILPEAIM 180

Query: 235 LKKVVVYDERTSCMKPDLHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPK 294
           LKKVVV+   TSCMKPDLHISFNFGVLE+KEDQYMQLRKLFR RLSEFVSSH E DD+PK
Sbjct: 181 LKKVVVFYGLTSCMKPDLHISFNFGVLESKEDQYMQLRKLFRTRLSEFVSSHPEIDDIPK 240

Query: 295 DLLPNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKS 354
           D LPNPFNFRS  +  ++N LS +KTSIEQLAPEQP+PS E I  NHHSE NQGFRI+KS
Sbjct: 241 DSLPNPFNFRSLNLFPETNSLSSVKTSIEQLAPEQPLPSAEDIPSNHHSENNQGFRIIKS 300

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BLAST of Cucsa.079770 vs. TrEMBL
Match: A0A072VLQ6_MEDTR (DNA replication factor CDT1-like protein OS=Medicago truncatula GN=MTR_1g070170 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.2e-42
Identity = 128/335 (38.21%), Postives = 176/335 (52.54%), Query Frame = 1


Query: 55  MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKL--STRTRNCKV 114
           M  +S   S SS +T   +S KP   +SKSL +DP  L++KTPEK  +     RTRN  V
Sbjct: 1   MKTSSETPSQSSHNT---RSKKPNLRSSKSLFKDPIELTTKTPEKSLEKPPPMRTRNRGV 60

Query: 115 SLSIKAIKRATQSVPE---------------SNPLLPLDLPTEESKSM--------LCKL 174
           +LSI  I++  + + +               +   + L  P + S+S         L + 
Sbjct: 61  ALSISDIRKVAKGLQDQKKQSNETTSLKGKSARRQITLASPRKSSESSNLPEKYENLGEF 120

Query: 175 FYSSDSAMRLLRFKGVASNFSNVCPKIEALTD-RFPCRHLAQFKFILPEAIVLKKVVVYD 234
           F S DS++RLLR KG  ++F+N+ PKIE LTD RF   HLAQ KFILPEAI +KK++V+D
Sbjct: 121 FDSLDSSIRLLRLKGSMTSFNNIRPKIETLTDRRFTHAHLAQLKFILPEAIAIKKLLVFD 180

Query: 235 ERTSCMKPDLHISFN-----FGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLL 294
           ERTSCMKPDLH+S N     F      E   M LRKLFR RL+EF  SH E D+VP+++L
Sbjct: 181 ERTSCMKPDLHVSINPDAVEFNAKLLSESGTMSLRKLFRVRLNEFWKSHPEGDEVPEEML 240

Query: 295 PNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMH 352
           P PF+   Q+ +            +  + P    P+++       S+         S  H
Sbjct: 241 PEPFSRPKQDPL------------VHMMKPPSSFPAVKLSVARASSDIADNTDPANSESH 300

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BLAST of Cucsa.079770 vs. TrEMBL
Match: B9T2A2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0463570 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.3e-40
Identity = 124/331 (37.46%), Postives = 176/331 (53.17%), Query Frame = 1


Query: 62  VSSSSSSTLPFKSNKPLRS---NSKSLLQDPQSLSSKTPEK-PAKL-STRTRNCKVSLSI 121
           +SSS SS +P+KS KPL+S    SKS L +P  ++++TP+K PA+L S R RN  V+LS+
Sbjct: 1   MSSSRSSPIPYKSKKPLKSATPKSKSKLSNP--IATQTPDKQPAELPSRRLRNRGVALSL 60

Query: 122 KAIKRATQSVPESNPLLPLDL-----------PTE----------------ESKSMLCKL 181
           K +++  Q   + N    + +           P E                E   +L + 
Sbjct: 61  KEVRKIAQGNADINKGGGVHIVKSARRQISTWPEESTGGEKSNKQPEEKIPEGYEILSEF 120

Query: 182 FYSSDSAMRLLRFKGVASNFSNVCPKIEALTDR-FPCRHLAQFKFILPEAIVLKKVVVYD 241
           F   DS +RL+R KG     +N+ PKIE LTDR F   HLAQ K+ILPEAI + +V+V+D
Sbjct: 121 FDCLDSTIRLMRLKGSMPTLTNISPKIECLTDRRFDHGHLAQMKYILPEAIEITRVLVFD 180

Query: 242 ERTSCMKPDLHISFNFGVLE-----NKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLL 301
           ER+SCMKPDLH+S N   +E       E + + LRK+FRARL +F  +H E D++PK+LL
Sbjct: 181 ERSSCMKPDLHVSLNVDAIECDVNLKSESKNLHLRKVFRARLEDFYKAHPEGDEIPKELL 240

Query: 302 PNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMH 355
           P PFN    ++ + +   S   + IE  A                     G ++ KS + 
Sbjct: 241 PEPFNRSKLDLSSGTTKPSTSLSIIETPA---------------------GTQMAKSQLP 298

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BLAST of Cucsa.079770 vs. TrEMBL
Match: V4TUC7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019292mg PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 121/336 (36.01%), Postives = 177/336 (52.68%), Query Frame = 1


Query: 63  SSSSSSTLPFKSNKPLRSNSKSLLQD----PQSLSSKTPEKPAKLSTRTRNCKVSLSIKA 122
           SS S  ++PF+  KP+ +  K  + D    P  L+SKTPEK    S R RN +++LS+K 
Sbjct: 3   SSDSPQSIPFRCKKPITAKGKPEMSDQNPNPTQLASKTPEKQP--SRRARNSRMALSLKE 62

Query: 123 IKRATQSVPESNPLLPLDLPTE-----------------------ESKSMLCKLFYSSDS 182
           I++A Q+ P+  P   ++   +                       E    L + F S D+
Sbjct: 63  IRKAAQTKPQQPPKDQIESAGKQISASPSVKSPVNPAGSGSPKLPEKYMQLAECFDSLDA 122

Query: 183 AMRLLRFKGVASNFSNVCPKIEALTDR-FPCRHLAQFKFILPEAIVLKKVVVYDERTSCM 242
            +RLL+ K  +  FS++CPKIE LTDR F   HLAQ KFILPE I +KKV+ +DE+TSCM
Sbjct: 123 VIRLLKLKCSSPTFSSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCM 182

Query: 243 KPDLHISFNFGVLE-----NKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNF 302
           KPDLH++ N   +E         + + LR +FRARL +F+  H E D++P++ LP PFN 
Sbjct: 183 KPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFN- 242

Query: 303 RSQ-----EVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVK--SIM 355
           RS+      +V  S  L+P  +  +    +Q + S          + ++   IVK  SI 
Sbjct: 243 RSRSDLQLNMVKNSTSLTPADSPTDASVEQQQVSS-------PTCQNSKLLNIVKAPSIS 302

[Close]

BLAST of Cucsa.079770 vs. TrEMBL
Match: V4T9W2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019292mg PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 121/336 (36.01%), Postives = 177/336 (52.68%), Query Frame = 1


Query: 63  SSSSSSTLPFKSNKPLRSNSKSLLQD----PQSLSSKTPEKPAKLSTRTRNCKVSLSIKA 122
           SS S  ++PF+  KP+ +  K  + D    P  L+SKTPEK    S R RN +++LS+K 
Sbjct: 3   SSDSPQSIPFRCKKPITAKGKPEMSDQNPNPTQLASKTPEKQP--SRRARNSRMALSLKE 62

Query: 123 IKRATQSVPESNPLLPLDLPTE-----------------------ESKSMLCKLFYSSDS 182
           I++A Q+ P+  P   ++   +                       E    L + F S D+
Sbjct: 63  IRKAAQTKPQQPPKDQIESAGKQISASPSVKSPVNPAGSGSPKLPEKYMQLAECFDSLDA 122

Query: 183 AMRLLRFKGVASNFSNVCPKIEALTDR-FPCRHLAQFKFILPEAIVLKKVVVYDERTSCM 242
            +RLL+ K  +  FS++CPKIE LTDR F   HLAQ KFILPE I +KKV+ +DE+TSCM
Sbjct: 123 VIRLLKLKCSSPTFSSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCM 182

Query: 243 KPDLHISFNFGVLE-----NKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNF 302
           KPDLH++ N   +E         + + LR +FRARL +F+  H E D++P++ LP PFN 
Sbjct: 183 KPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFN- 242

Query: 303 RSQ-----EVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVK--SIM 355
           RS+      +V  S  L+P  +  +    +Q + S          + ++   IVK  SI 
Sbjct: 243 RSRSDLQLNMVKNSTSLTPADSPTDASVEQQQVSS-------PTCQNSKLLNIVKAPSIS 302

[Close]

BLAST of Cucsa.079770 vs. TAIR10
Match: AT2G31270.1 (AT2G31270.1 homolog of yeast CDT1 A)

HSP 1 Score: 129.8 bits (325), Expect = 3.3e-30
Identity = 93/268 (34.70%), Postives = 143/268 (53.36%), Query Frame = 1


Query: 66  SSSTLPFKSNKPL-----RSNSKSLLQDPQSLSSKTPEKPAK---LSTRTRNCKVSLSIK 125
           SS ++PFKS K L      S S++   +P S++  TPEKP +     +R R+  +S+  K
Sbjct: 6   SSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVALSV--K 65

Query: 126 AIKRATQSVPESNPLLPLDLPTE--------------------------ESKSMLCKLFY 185
            I++A  S   S   +     +                           E    L K F 
Sbjct: 66  EIRQAAGSRRRSEDPVASSAKSRLFFDSSSSSPSKRKSSNKNAEKEKLPEKYENLGKFFE 125

Query: 186 SSDSAMRLLRFKGVASNFSNVCPKIEALTDRFPC-RHLAQFKFILPEAIVLKKVVVYDER 245
           + D++M L + +G    FSN+  +IE LT+R  C  HLAQ K ILPEAI +K+V+++DE 
Sbjct: 126 ALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILPEAIEIKRVLIHDET 185

Query: 246 TSCMKPDLHISFNFGVLE-----NKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPN 293
           T CMKPDLH++ N   +E       E + + LRK+FRARL++FV +H + D+VP++ LP 
Sbjct: 186 TCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRARLADFVKAHPQGDEVPEEPLPE 245

[Close]

BLAST of Cucsa.079770 vs. TAIR10
Match: AT3G54710.1 (AT3G54710.1 homolog of yeast CDT1 B homolog of yeast CDT1 B)

HSP 1 Score: 119.8 bits (299), Expect = 3.4e-27
Identity = 77/186 (41.40%), Postives = 109/186 (58.60%), Query Frame = 1


Query: 91  SLSSKTPEKPAKLSTRTRNCKVSLSIKAIKR---ATQSVPESNPLLPLDLPTEESKSMLC 150
           S S    EKP  +S    + K    IK +KR   ++   PES   LP      E   +L 
Sbjct: 3   SSSKIDSEKPVMVSESLFSTKTP--IKTVKRQIFSSSPKPESVIKLP------ERFEILE 62

Query: 151 KLFYSSDSAMRLLRFKGVASNFSNVCPKIEALTDR-FPCRHLAQFKFILPEAIVLKKVVV 210
           + F   D+A+RLL+ KG ++ ++N+CPKIE LT+R F   HLAQ K I PEAI LK+V+ 
Sbjct: 63  EFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNRIFSYDHLAQMKHIYPEAIELKRVLK 122

Query: 211 YDERTSCMKPDLHISFNFGVLENKE----DQYMQLRKLFRARLSEFVSSHRESDDVPKDL 269
           + E T CMKP LHI  N   +  ++     +YM+LRK+F ++L +F  +H   D++PK+L
Sbjct: 123 FVEDTCCMKPRLHIKLNTDAIVVEDTICGTKYMELRKVFHSKLVDFRKAH-PKDEIPKEL 179

[Close]

BLAST of Cucsa.079770 vs. NCBI nr
Match: gi|778726464|ref|XP_011659102.1| (PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 469.9 bits (1208), Expect = 3.9e-129
Identity = 261/317 (82.33%), Postives = 266/317 (83.91%), Query Frame = 1


Query: 55  MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 114
           MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL
Sbjct: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60

Query: 115 SIKAIKRATQSVPESNPLLPLDLPTEESKS------MLCKLFYSSDSAMRLLRFKGVASN 174
           SIKAIKRATQSVPESNPLLPLDLPTEESKS      +L     S D+  + L  K   S 
Sbjct: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEKCFVS- 120

Query: 175 FSNV------CPKIEALTDRFPCRHLAQFKFILPE-----AIVLKKVVVYDERTSCMKPD 234
           FS V      C  ++ L       H     F L       AIVLKKVVVYDERTSCMKPD
Sbjct: 121 FSIVRILQCGCCDLKVL-------HPTSLTFALRSKPSLIAIVLKKVVVYDERTSCMKPD 180

Query: 235 LHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAK 294
           LHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAK
Sbjct: 181 LHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAK 240

Query: 295 SNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLS 354
           SNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLS
Sbjct: 241 SNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLS 300

[Close]

BLAST of Cucsa.079770 vs. NCBI nr
Match: gi|659111691|ref|XP_008455861.1| (PREDICTED: CDT1-like protein b [Cucumis melo])

HSP 1 Score: 456.4 bits (1173), Expect = 4.4e-125
Identity = 251/331 (75.83%), Postives = 270/331 (81.57%), Query Frame = 1


Query: 55  MADASNEVS----SSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNC 114
           MADAS ++S    SSSSSTLPFKS KPLRSNSKSLL+DPQSLSSKTPEKPA+LSTRTRN 
Sbjct: 1   MADASKKISSSSSSSSSSTLPFKSKKPLRSNSKSLLEDPQSLSSKTPEKPAELSTRTRNR 60

Query: 115 KVSLSIKAIKRATQSVPESNPLLPLDLPTEESKSMLCKLFYSS----------------- 174
           KV+LSIK +KRA  SV +SN  LPL L  EESKS+  ++   S                 
Sbjct: 61  KVALSIKEVKRAALSVTQSNRQLPLHLAIEESKSVRRQIDLWSNESQSVDNKSKKFPEKF 120

Query: 175 ----------DSAMRLLRFKGVASNFSNVCPKIEALTD-RFPCRHLAQFKFILPEAIVLK 234
                     DSAMRLLRFKGVASNFSNVCPKIEALTD RF   HLAQFKFIL EAIVLK
Sbjct: 121 EMLCKFFYSLDSAMRLLRFKGVASNFSNVCPKIEALTDRRFTYGHLAQFKFILREAIVLK 180

Query: 235 KVVVYDERTSCMKPDLHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDL 294
           KV+VYDERT CMKPDLHISFNFGV EN+EDQYMQLRKLFRARLSEFVSS+ E+DDVPKDL
Sbjct: 181 KVLVYDERTCCMKPDLHISFNFGVPENQEDQYMQLRKLFRARLSEFVSSYPETDDVPKDL 240

Query: 295 LPNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIM 354
           LPNPFNFRSQ++VAKSN LS IKTSIEQLAPEQPMPSIEGISFNHHSEE+QGFR+VKS M
Sbjct: 241 LPNPFNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGISFNHHSEEHQGFRMVKSTM 300

[Close]

BLAST of Cucsa.079770 vs. NCBI nr
Match: gi|659123165|ref|XP_008461526.1| (PREDICTED: CDT1-like protein b [Cucumis melo])

HSP 1 Score: 448.7 bits (1153), Expect = 9.2e-123
Identity = 244/327 (74.62%), Postives = 265/327 (81.04%), Query Frame = 1


Query: 55  MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 114
           MADAS ++SSSSSSTLPFK  KPL SN KSLL+D QSLSSKTPEKPA+LSTR+RN KV+L
Sbjct: 1   MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVAL 60

Query: 115 SIKAIKRATQSVPESNPLLPLDLPTEESKSMLCKLFYSS--------------------- 174
           SIK +K+A +SV ESN  LPLDL TEE KS+  ++   S                     
Sbjct: 61  SIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSNESQSVENKSRKLPEKFEMLC 120

Query: 175 ------DSAMRLLRFKGVASNFSNVCPKIEALTD-RFPCRHLAQFKFILPEAIVLKKVVV 234
                 DSAMRLLR KGVASNFSNVCPK+EALTD RF   HLAQFKFILPEAIVLKKVVV
Sbjct: 121 KFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDRRFSYGHLAQFKFILPEAIVLKKVVV 180

Query: 235 YDERTSCMKPDLHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNP 294
           YDE+T CMKPDLHISFNF VLENKEDQYMQLRKLFRARLSEFVSS+ E+ DVPKDLLPNP
Sbjct: 181 YDEQTCCMKPDLHISFNFAVLENKEDQYMQLRKLFRARLSEFVSSYPETHDVPKDLLPNP 240

Query: 295 FNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTG 354
           FNFRSQ++VAKSN LS IKTSIEQLAPEQPMPSIEGI FNHHSEENQGFRIVKS M ++G
Sbjct: 241 FNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGICFNHHSEENQGFRIVKSTMSISG 300

[Close]

BLAST of Cucsa.079770 vs. NCBI nr
Match: gi|778726467|ref|XP_011659103.1| (PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 407.5 bits (1046), Expect = 2.3e-110
Identity = 226/302 (74.83%), Postives = 239/302 (79.14%), Query Frame = 1


Query: 55  MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 114
           MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL
Sbjct: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60

Query: 115 SIKAIKRATQSVPESNPLLPLDLPTEESKSMLCKLFYSSDSAMRLLRFKGVASNFSNVCP 174
           SIKAIKRATQSVPESNPLLPLDLPTEESKS+  ++                    SN   
Sbjct: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQI-----------------DLLSNESQ 120

Query: 175 KIEALTDRFPCRHLAQFKF--ILPEAIVLKKVVVYDERTSCMKPDLHISFNFGVLENKED 234
            ++  + + P +    F    IL       KV+     T  ++          ++ENKED
Sbjct: 121 SVDNKSKKLPEKCFVSFSIVRILQCGCCDLKVLHPTSLTFALRSKP------SLIENKED 180

Query: 235 QYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAKSNLLSPIKTSIEQLA 294
           QYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAKSNLLSPIKTSIEQLA
Sbjct: 181 QYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAKSNLLSPIKTSIEQLA 240

Query: 295 PEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLSHFSPSFSRRFSQKVV 354
           PEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLSHFSPSFSRRFSQKVV
Sbjct: 241 PEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLSHFSPSFSRRFSQKVV 279

[Close]

BLAST of Cucsa.079770 vs. NCBI nr
Match: gi|659093245|ref|XP_008447443.1| (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo])

HSP 1 Score: 377.5 bits (968), Expect = 2.6e-101
Identity = 216/333 (64.86%), Postives = 241/333 (72.37%), Query Frame = 1


Query: 55  MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 114
           MADAS+ +SS SS TLPFKS K L SN KSLL+DPQSLSSKTPEKPA+   RTR  KV+L
Sbjct: 1   MADASHNISSPSS-TLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAE---RTRKRKVAL 60

Query: 115 SIKAIKRATQSVPESNPLLPLDLPTEESKSMLCKLFYSSDSAMR---------------- 174
           SIK +KRA QSV ESN  LP DL T+ SK +  ++  SS+ ++                 
Sbjct: 61  SIKEVKRAAQSVNESNRQLPHDLTTKGSKLVRRQMDSSSNESLSSRSKTCVDKKSNKLPE 120

Query: 175 ----LLRFK-------------GVASNFSNVCPKIEALTD-RFPCRHLAQFKFILPEAIV 234
               L +F              GVASNFSNVC KIE LTD RF   HLAQ KFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSNVCTKIEVLTDRRFSYNHLAQLKFILPEAIM 180

Query: 235 LKKVVVYDERTSCMKPDLHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPK 294
           LKKVVV+DERTSCMKPDLHISFNF +LE+KEDQYMQLRKLFR RLSEF SSH E DDVPK
Sbjct: 181 LKKVVVFDERTSCMKPDLHISFNFDILESKEDQYMQLRKLFRTRLSEFASSHPEIDDVPK 240

Query: 295 DLLPNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKS 354
           DLLPNPFNFRSQ +  K+N LS +KTSIEQL PEQPMPS EG+  NHH EENQGFRI+KS
Sbjct: 241 DLLPNPFNFRSQNLFPKTNPLSSVKTSIEQLGPEQPMPSAEGLLSNHHLEENQGFRIIKS 300

The following BLAST results are available for this feature:

BLAST of Cucsa.079770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CDT1A_ARATH	5.9e-29	34.70	CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1	[more]
CDT1B_ARATH	6.1e-26	41.40	CDT1-like protein b OS=Arabidopsis thaliana GN=CDT1B PE=1 SV=1	[more]

BLAST of Cucsa.079770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7I7_CUCSA	2.0e-92	61.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G394670 PE=4 SV=1	[more]
A0A072VLQ6_MEDTR	7.2e-42	38.21	DNA replication factor CDT1-like protein OS=Medicago truncatula GN=MTR_1g070170 ...	[more]
B9T2A2_RICCO	2.3e-40	37.46	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0463570 PE=4 SV=1	[more]
V4TUC7_9ROSI	1.2e-39	36.01	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019292mg PE=4 SV=1	[more]
V4T9W2_9ROSI	1.2e-39	36.01	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019292mg PE=4 SV=1	[more]

BLAST of Cucsa.079770 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31270.1	3.3e-30	34.70	homolog of yeast CDT1 A	[more]
AT3G54710.1	3.4e-27	41.40	homolog of yeast CDT1 B homolog of yeast CDT1 B	[more]

BLAST of Cucsa.079770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726464\|ref\|XP_011659102.1\|	3.9e-129	82.33	PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|659111691\|ref\|XP_008455861.1\|	4.4e-125	75.83	PREDICTED: CDT1-like protein b [Cucumis melo]	[more]
gi\|659123165\|ref\|XP_008461526.1\|	9.2e-123	74.62	PREDICTED: CDT1-like protein b [Cucumis melo]	[more]
gi\|778726467\|ref\|XP_011659103.1\|	2.3e-110	74.83	PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis sativus]	[more]
gi\|659093245\|ref\|XP_008447443.1\|	2.6e-101	64.86	PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR014939	CDT1_Gemini-bd-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.079770.1	Cucsa.079770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 141..267 score: 2.04
IPR014939	CDT1 Geminin-binding domain-like	PFAM	PF08839	CDT1	coord: 145..221 score: 2.
IPR014939	CDT1 Geminin-binding domain-like	SMART	SM01075	CDT1_2	coord: 137..265 score: 2.
None	No IPR available	PANTHER	PTHR28637	FAMILY NOT NAMED	coord: 145..350 score: 6.3
None	No IPR available	PANTHER	PTHR28637:SF1	DNA REPLICATION FACTOR CDT1	coord: 145..350 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.079770	CSPI07G12420	Wild cucumber (PI 183967)	cgycpiB079

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.079770	Melon (DHL92) v3.6.1	cgymedB083
Cucsa.079770	Silver-seed gourd	carcgyB0324
Cucsa.079770	Cucumber (Chinese Long) v3	cgycucB080
Cucsa.079770	Watermelon (97103) v2	cgywmbB078
Cucsa.079770	Wax gourd	cgywgoB092
Cucsa.079770	Cucurbita maxima (Rimu)	cgycmaB0133
Cucsa.079770	Cucurbita maxima (Rimu)	cgycmaB0139
Cucsa.079770	Cucurbita maxima (Rimu)	cgycmaB0142
Cucsa.079770	Cucurbita moschata (Rifu)	cgycmoB0130
Cucsa.079770	Cucurbita moschata (Rifu)	cgycmoB0135
Cucsa.079770	Cucurbita moschata (Rifu)	cgycmoB0137
Cucsa.079770	Cucumber (Chinese Long) v2	cgycuB076
Cucsa.079770	Melon (DHL92) v3.5.1	cgymeB083
Cucsa.079770	Melon (DHL92) v3.5.1	cgymeB085
Cucsa.079770	Watermelon (Charleston Gray)	cgywcgB081
Cucsa.079770	Watermelon (97103) v1	cgywmB083
Cucsa.079770	Cucurbita pepo (Zucchini)	cgycpeB0137
Cucsa.079770	Cucurbita pepo (Zucchini)	cgycpeB0139
Cucsa.079770	Bottle gourd (USVL1VR-Ls)	cgylsiB081