CSPI07G12420 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G12420
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 10697157 .. 10697594 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCCAAACAATTTCCCCTTTATTCCCGCCAAATCCATTCCATTTGTAAACCCCCTTAATCACCAATTTTCCTTCTATCACTTCATAACAATGGCGGACGCTTCAAACGAAGTTTCTTCTTCATCATCATCAACTTTACCCTTCAAATCGAACAAACCTTTGCGTTCCAACTCCAAATCTTTACTTCAGGATCCACAATCCTTGAGCTCCAAGACCCCGGAAAAGCCTGCGAAGCTCTCTACCAGAACTAGAAACTGTAAGGTTTCACTTTCGATCAAAGCGATTAAACGAGCTACTCAGAGTGTCCCTGAATCCAATCCTCTGTTGCCTCTTGATTTGCCTACTGAAGAGAGTAAATCGGTTAGAAGACAAATAGATTTGTTGTCGAATGAAAGTCAATCGGTTGATAATAAGTCCAAGAAATTGCCTGAGAAGTAA

mRNA sequence

ATGGCGGACGCTTCAAACGAAGTTTCTTCTTCATCATCATCAACTTTACCCTTCAAATCGAACAAACCTTTGCGTTCCAACTCCAAATCTTTACTTCAGGATCCACAATCCTTGAGCTCCAAGACCCCGGAAAAGCCTGCGAAGCTCTCTACCAGAACTAGAAACTGTAAGGTTTCACTTTCGATCAAAGCGATTAAACGAGCTACTCAGAGTGTCCCTGAATCCAATCCTCTGTTGCCTCTTGATTTGCCTACTGAAGAGAGTAAATCGGTTAGAAGACAAATAGATTTGTTGTCGAATGAAAGTCAATCGGTTGATAATAAGTCCAAGAAATTGCCTGAGAAGTAA

Coding sequence (CDS)

ATGGCGGACGCTTCAAACGAAGTTTCTTCTTCATCATCATCAACTTTACCCTTCAAATCGAACAAACCTTTGCGTTCCAACTCCAAATCTTTACTTCAGGATCCACAATCCTTGAGCTCCAAGACCCCGGAAAAGCCTGCGAAGCTCTCTACCAGAACTAGAAACTGTAAGGTTTCACTTTCGATCAAAGCGATTAAACGAGCTACTCAGAGTGTCCCTGAATCCAATCCTCTGTTGCCTCTTGATTTGCCTACTGAAGAGAGTAAATCGGTTAGAAGACAAATAGATTTGTTGTCGAATGAAAGTCAATCGGTTGATAATAAGTCCAAGAAATTGCCTGAGAAGTAA

Homology

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BLAST of CSPI07G12420 vs. TrEMBL
Match: A0A0A0L7I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G394670 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.4e-23
Identity = 79/121 (65.29%), Postives = 88/121 (72.73%), Query Frame = 1


Query: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60
           MADASN++ SS SSTLPFKS K L SNS SLL+DPQSLSS+TPEKP +   R R  KV+L
Sbjct: 1   MADASNKI-SSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVE---RNRKRKVAL 60

Query: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQS------VDNKSKKLPE 116
           SIK +K+A QSV ESN  L  DL T  SK VRRQ+D  SNESQS      VDNKS KLPE
Sbjct: 61  SIKEVKQAAQSVHESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPE 117

[Close]

BLAST of CSPI07G12420 vs. TrEMBL
Match: A0A0A0LD77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842990 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.1e-21
Identity = 82/124 (66.13%), Postives = 93/124 (75.00%), Query Frame = 1


Query: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60
           MA ASN++SS SS TLPFKSNK + SNS SLL+DPQSLSSKTPEKPA+  TR R  KV+L
Sbjct: 1   MAGASNKISSPSS-TLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAE-RTRKRK-KVAL 60

Query: 61  SIKAIKRATQSVPESN-PLLPLDLPTEESKSVRRQIDLLSNESQS-------VDNK-SKK 116
           SI+ ++RA QSV ESN  LLP DL TE SK VRR++D  SNESQS       VDNK S K
Sbjct: 61  SIEEVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNK 120

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BLAST of CSPI07G12420 vs. NCBI nr
Match: gi|778726464|ref|XP_011659102.1| (PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 5.8e-50
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60
           MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL
Sbjct: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60

Query: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK 116
           SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK
Sbjct: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK 115

[Close]

BLAST of CSPI07G12420 vs. NCBI nr
Match: gi|778726467|ref|XP_011659103.1| (PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 5.8e-50
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60
           MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL
Sbjct: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60

Query: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK 116
           SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK
Sbjct: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK 115

[Close]

BLAST of CSPI07G12420 vs. NCBI nr
Match: gi|659111691|ref|XP_008455861.1| (PREDICTED: CDT1-like protein b [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 5.3e-35
Identity = 94/119 (78.99%), Postives = 101/119 (84.87%), Query Frame = 1


Query: 1   MADASNEVS----SSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNC 60
           MADAS ++S    SSSSSTLPFKS KPLRSNSKSLL+DPQSLSSKTPEKPA+LSTRTRN 
Sbjct: 1   MADASKKISSSSSSSSSSTLPFKSKKPLRSNSKSLLEDPQSLSSKTPEKPAELSTRTRNR 60

Query: 61  KVSLSIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK 116
           KV+LSIK +KRA  SV +SN  LPL L  EESKSVRRQIDL SNESQSVDNKSKK PEK
Sbjct: 61  KVALSIKEVKRAALSVTQSNRQLPLHLAIEESKSVRRQIDLWSNESQSVDNKSKKFPEK 119

[Close]

BLAST of CSPI07G12420 vs. NCBI nr
Match: gi|659123165|ref|XP_008461526.1| (PREDICTED: CDT1-like protein b [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 4.9e-33
Identity = 88/115 (76.52%), Postives = 99/115 (86.09%), Query Frame = 1


Query: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60
           MADAS ++SSSSSSTLPFK  KPL SN KSLL+D QSLSSKTPEKPA+LSTR+RN KV+L
Sbjct: 1   MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVAL 60

Query: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK 116
           SIK +K+A +SV ESN  LPLDL TEE KSVRRQID  SNESQSV+NKS+KLPEK
Sbjct: 61  SIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSNESQSVENKSRKLPEK 115

[Close]

BLAST of CSPI07G12420 vs. NCBI nr
Match: gi|659093245|ref|XP_008447443.1| (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 3.5e-23
Identity = 81/121 (66.94%), Postives = 89/121 (73.55%), Query Frame = 1


Query: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60
           MADAS+ +SS SS TLPFKS K L SN KSLL+DPQSLSSKTPEKPA+   RTR  KV+L
Sbjct: 1   MADASHNISSPSS-TLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAE---RTRKRKVAL 60

Query: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQS------VDNKSKKLPE 116
           SIK +KRA QSV ESN  LP DL T+ SK VRRQ+D  SNES S      VD KS KLPE
Sbjct: 61  SIKEVKRAAQSVNESNRQLPHDLTTKGSKLVRRQMDSSSNESLSSRSKTCVDKKSNKLPE 117

The following BLAST results are available for this feature:

BLAST of CSPI07G12420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G12420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7I7_CUCSA	9.4e-23	65.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G394670 PE=4 SV=1	[more]
A0A0A0LD77_CUCSA	5.1e-21	66.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842990 PE=4 SV=1	[more]

BLAST of CSPI07G12420 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G12420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726464\|ref\|XP_011659102.1\|	5.8e-50	100.00	PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|778726467\|ref\|XP_011659103.1\|	5.8e-50	100.00	PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis sativus]	[more]
gi\|659111691\|ref\|XP_008455861.1\|	5.3e-35	78.99	PREDICTED: CDT1-like protein b [Cucumis melo]	[more]
gi\|659123165\|ref\|XP_008461526.1\|	4.9e-33	76.52	PREDICTED: CDT1-like protein b [Cucumis melo]	[more]
gi\|659093245\|ref\|XP_008447443.1\|	3.5e-23	66.94	PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G12420.1	CSPI07G12420.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G12420	CsaV3_7G024450	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G12420	Cucsa.079770	Cucumber (Gy14) v1	cgycpiB079
CSPI07G12420	CsGy7G011570	Cucumber (Gy14) v2	cgybcpiB331

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G12420	Melon (DHL92) v3.6.1	cpimedB514
CSPI07G12420	Silver-seed gourd	carcpiB0307
CSPI07G12420	Silver-seed gourd	carcpiB0684
CSPI07G12420	Watermelon (97103) v2	cpiwmbB597
CSPI07G12420	Wax gourd	cpiwgoB718
CSPI07G12420	Cucurbita maxima (Rimu)	cmacpiB045
CSPI07G12420	Cucurbita maxima (Rimu)	cmacpiB493
CSPI07G12420	Cucurbita moschata (Rifu)	cmocpiB035
CSPI07G12420	Cucurbita moschata (Rifu)	cmocpiB484
CSPI07G12420	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G12420	Melon (DHL92) v3.5.1	cpimeB528
CSPI07G12420	Watermelon (Charleston Gray)	cpiwcgB554
CSPI07G12420	Watermelon (97103) v1	cpiwmB586
CSPI07G12420	Cucurbita pepo (Zucchini)	cpecpiB593
CSPI07G12420	Cucurbita pepo (Zucchini)	cpecpiB801
CSPI07G12420	Bottle gourd (USVL1VR-Ls)	cpilsiB517