Cucsa.079770.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.079770.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	CDT1 A, putative
Location	scaffold00793 : 2621694 .. 2623808 (-)
Sequence length	1065

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAAAAGAAGAGACGTTCACCGGAGGCACCAAGTTGAAGGAACTGTATAAGCGGAAGGTTCAAGTTTACGTTTTTTTTTAACGTTGTTCTGTTTTTAGGTTGAAGAAAAGGAAAAAGAAATAGGAAATGGGGAAATTAAATAAGGGTATTTCCGTCATTTCACACCAAATTTATCCACCTTTTTTATCATCAATCCTAAAACTCTTTTTCTACCCCATTTTTGGCCTAGTTTTGGCAATTTCTGGTACTTATTCAGCTTCGTTCTTCCCAGTTCACAAACACCCAAACAGTTTCCCCTTTATTCCCGCCAAATCCATTCCATTTGTAAACCCCTTAATCACCAATTTCCCTTCTATCACTCCATAACAATGGCGGACGCTTCAAACGAAGTTTCTTCTTCATCATCATCAACTTTACCCTTCAAATCGAACAAACCTTTGCGTTCCAACTCCAAATCCTTACTTCAGGATCCACAATCCTTGAGCTCCAAGACCCCGGAAAAGCCTGCGAAGCTCTCTACCAGAACTAGAAACTGTAAGGTTTCACTTTCGATCAAAGCGATTAAACGAGCTACTCAGAGTGTCCCTGAATCCAATCCTCTGTTGCCTCTTGATCTGCCTACTGAAGAGAGTAAATCGGTTAGAAGACAAATAGATTTGTTGTCGAATGAAAGTCAATCGGTTGATAATAAGTCCAAGAAATTGCCTGAGAAGTAAGTCTTTTTGTTTCTCGATCTTGAAATGTGACTTATTGATGGTTGGCTGCTCTTTTAGATCTGTTTTGAATGTTTCGTAAATGAGTCTTGTTATTATTCTGGTGTTTGCATATTTGAGATGCTTTGTAAGCTTTTCTATAGTTCGGATTCTGCAATGCGGTTGTTGCGATTTAAAGGTGTTGCATCCAACTTCTCTAACGTTTGCCCTAAGATCGAAGCCCTCACTGATAGGTACTTATTCTGCCTTCCATATTGTCTTTTCCTTTCCATCGATTTATATGTTGATAGTAACTACAGGTTAATTTAGAATTTTAATCTGACTGGCCGCTTAAGTAACCGTGAAGAAGTTTGTAAAATTTGTTATTTCTTTTAAATGCAATCGTGGTTGTTATGGCATACGAAGTTAGATTGACGATATTGTGATGACTGTTTGAATCAAATCGTTCTAGTTCCAGTTAATTTTGTGGCATTCACTTCTTAGATTTTTTAAATGACTCGAAGAGTTCCTCTGTTTTCTTATTCTGAATTTGATGGCTATGAGCGCAAGAGGTTTCCATGTCGTCATTTGGCTCAATTCAAGTTTATTTTACCTGAAGCAATTGTTCTCAAGAAGGTTGTGGTCTATGATGAGAGGACCAGTTGTATGAAGCCAGATCTTCACATATCTTTCAATTTTGGTGTTCTAGAGAATAAGGAGGACCAATATATGCAACTGAGGAAGTTGTTTCGGGCACGACTTTCAGAATTTGTGAGTTCCCATCGAGAGGTATGCCACCATTTTCCTTCTATGATTCGTAGATTTAGTGTTTTAACTGTCTTTGTGCTCACGAATCCTAGAAGGTTGGTTCTTTCTATATGAAATGTGAAAACCCGAGGTCCCTATATCTTTGCTAGTACTTGCTCTGTTTGCAAGTGCAAGGAGGTGTAGCATTCCGGTGATAGAAGTTTGTTGTTATCATTTGCATGATGGCCACCAAGGTTGCTTGATTTCTCTATTTCATTTTGGAAGTCATTATTTTTCTTATATTTTGGATGTACTGTTTCCTGTTCGTTGAGAGTTTCTATGCTCTAATACATGCTTCTATATTTAGAGTGATGATGTTCCAAAGGATTTGCTGCCAAATCCATTCAATTTCCGAAGCCAAGAAGTTGTCGCAAAATCCAACTTGCTATCCCCTATCAAGACATCAATTGAGCAATTGGCCCCTGAGCAACCAATGCCATCAATAGAAGGGATTTCTTTTAACCATCATTCAGAAGAAAATCAAGGTTTCCGGATAGTTAAATCTATCATGCATGTAACTGGCCCGACTAAGCAGAAGGAATTCATAGGGTTATCTCATTTTTCACCATCTTTTAGTCGCCGTTTCTCTCAAAAAGTTGTTGACACATAA

mRNA sequence

ATGGATGGAAAAGAAGAGACGTTCACCGGAGGCACCAAGTTGAAGGAACTcttcgttctTCCCAGTTCACAAACACCCAAACAGTTTCCCCTTTATTCCCGCCAAATCCATTCCATTTGTAAACCCCTTAATCACCAATTTCCCTTCTATCACTCCATAACAATGGCGGACGCTTCAAACGAAGTTTCTTCTTCATCATCATCAACTTTACCCTTCAAATCGAACAAACCTTTGCGTTCCAACTCCAAATCCTTACTTCAGGATCCACAATCCTTGAGCTCCAAGACCCCGGAAAAGCCTGCGAAGCTCTCTACCAGAACTAGAAACTGTAAGGTTTCACTTTCGATCAAAGCGATTAAACGAGCTACTCAGAGTGTCCCTGAATCCAATCCTCTGTTGCCTCTTGATCTGCCTACTGAAGAGAGTAAATCGATGCTTTGTAAGCTTTTCTATAGTTCGGATTCTGCAATGCGGTTGTTGCGATTTAAAGGTGTTGCATCCAACTTCTCTAACGTTTGCCCTAAGATCGAAGCCCTCACTGATAGGTTTCCATGTCGTCATTTGGCTCAATTCAAGTTTATTTTACCTGAAGCAATTGTTCTCAAGAAGGTTGTGGTCTATGATGAGAGGACCAGTTGTATGAAGCCAGATCTTCACATATCTTTCAATTTTGGTGTTCTAGAGAATAAGGAGGACCAATATATGCAACTGAGGAAGTTGTTTCGGGCACGACTTTCAGAATTTGTGAGTTCCCATCGAGAGAGTGATGATGTTCCAAAGGATTTGCTGCCAAATCCATTCAATTTCCGAAGCCAAGAAGTTGTCGCAAAATCCAACTTGCTATCCCCTATCAAGACATCAATTGAGCAATTGGCCCCTGAGCAACCAATGCCATCAATAGAAGGGATTTCTTTTAACCATCATTCAGAAGAAAATCAAGGTTTCCGGATAGTTAAATCTATCATGCATGTAACTGGCCCGACTAAGCAGAAGGAATTCATAGGGTTATCTCATTTTTCACCATCTTTTAGTCGCCGTTTCTCTCAAAAAGTTGTTGACACATAA

Coding sequence (CDS)

ATGGATGGAAAAGAAGAGACGTTCACCGGAGGCACCAAGTTGAAGGAACTCTTCGTTCTTCCCAGTTCACAAACACCCAAACAGTTTCCCCTTTATTCCCGCCAAATCCATTCCATTTGTAAACCCCTTAATCACCAATTTCCCTTCTATCACTCCATAACAATGGCGGACGCTTCAAACGAAGTTTCTTCTTCATCATCATCAACTTTACCCTTCAAATCGAACAAACCTTTGCGTTCCAACTCCAAATCCTTACTTCAGGATCCACAATCCTTGAGCTCCAAGACCCCGGAAAAGCCTGCGAAGCTCTCTACCAGAACTAGAAACTGTAAGGTTTCACTTTCGATCAAAGCGATTAAACGAGCTACTCAGAGTGTCCCTGAATCCAATCCTCTGTTGCCTCTTGATCTGCCTACTGAAGAGAGTAAATCGATGCTTTGTAAGCTTTTCTATAGTTCGGATTCTGCAATGCGGTTGTTGCGATTTAAAGGTGTTGCATCCAACTTCTCTAACGTTTGCCCTAAGATCGAAGCCCTCACTGATAGGTTTCCATGTCGTCATTTGGCTCAATTCAAGTTTATTTTACCTGAAGCAATTGTTCTCAAGAAGGTTGTGGTCTATGATGAGAGGACCAGTTGTATGAAGCCAGATCTTCACATATCTTTCAATTTTGGTGTTCTAGAGAATAAGGAGGACCAATATATGCAACTGAGGAAGTTGTTTCGGGCACGACTTTCAGAATTTGTGAGTTCCCATCGAGAGAGTGATGATGTTCCAAAGGATTTGCTGCCAAATCCATTCAATTTCCGAAGCCAAGAAGTTGTCGCAAAATCCAACTTGCTATCCCCTATCAAGACATCAATTGAGCAATTGGCCCCTGAGCAACCAATGCCATCAATAGAAGGGATTTCTTTTAACCATCATTCAGAAGAAAATCAAGGTTTCCGGATAGTTAAATCTATCATGCATGTAACTGGCCCGACTAAGCAGAAGGAATTCATAGGGTTATCTCATTTTTCACCATCTTTTAGTCGCCGTTTCTCTCAAAAAGTTGTTGACACATAA

Protein sequence

MDGKEETFTGGTKLKELFVLPSSQTPKQFPLYSRQIHSICKPLNHQFPFYHSITMADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSLSIKAIKRATQSVPESNPLLPLDLPTEESKSMLCKLFYSSDSAMRLLRFKGVASNFSNVCPKIEALTDRFPCRHLAQFKFILPEAIVLKKVVVYDERTSCMKPDLHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLSHFSPSFSRRFSQKVVDT*

Homology

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BLAST of Cucsa.079770.1 vs. Swiss-Prot
Match: CDT1A_ARATH (CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.9e-29
Identity = 93/268 (34.70%), Postives = 143/268 (53.36%), Query Frame = 1


Query: 66  SSSTLPFKSNKPL-----RSNSKSLLQDPQSLSSKTPEKPAK---LSTRTRNCKVSLSIK 125
           SS ++PFKS K L      S S++   +P S++  TPEKP +     +R R+  +S+  K
Sbjct: 6   SSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVALSV--K 65

Query: 126 AIKRATQSVPESNPLLPLDLPTE--------------------------ESKSMLCKLFY 185
            I++A  S   S   +     +                           E    L K F 
Sbjct: 66  EIRQAAGSRRRSEDPVASSAKSRLFFDSSSSSPSKRKSSNKNAEKEKLPEKYENLGKFFE 125

Query: 186 SSDSAMRLLRFKGVASNFSNVCPKIEALTDRFPC-RHLAQFKFILPEAIVLKKVVVYDER 245
           + D++M L + +G    FSN+  +IE LT+R  C  HLAQ K ILPEAI +K+V+++DE 
Sbjct: 126 ALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILPEAIEIKRVLIHDET 185

Query: 246 TSCMKPDLHISFNFGVLE-----NKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPN 293
           T CMKPDLH++ N   +E       E + + LRK+FRARL++FV +H + D+VP++ LP 
Sbjct: 186 TCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRARLADFVKAHPQGDEVPEEPLPE 245

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BLAST of Cucsa.079770.1 vs. Swiss-Prot
Match: CDT1B_ARATH (CDT1-like protein b OS=Arabidopsis thaliana GN=CDT1B PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.1e-26
Identity = 77/186 (41.40%), Postives = 109/186 (58.60%), Query Frame = 1


Query: 91  SLSSKTPEKPAKLSTRTRNCKVSLSIKAIKR---ATQSVPESNPLLPLDLPTEESKSMLC 150
           S S    EKP  +S    + K    IK +KR   ++   PES   LP      E   +L 
Sbjct: 3   SSSKIDSEKPVMVSESLFSTKTP--IKTVKRQIFSSSPKPESVIKLP------ERFEILE 62

Query: 151 KLFYSSDSAMRLLRFKGVASNFSNVCPKIEALTDR-FPCRHLAQFKFILPEAIVLKKVVV 210
           + F   D+A+RLL+ KG ++ ++N+CPKIE LT+R F   HLAQ K I PEAI LK+V+ 
Sbjct: 63  EFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNRIFSYDHLAQMKHIYPEAIELKRVLK 122

Query: 211 YDERTSCMKPDLHISFNFGVLENKE----DQYMQLRKLFRARLSEFVSSHRESDDVPKDL 269
           + E T CMKP LHI  N   +  ++     +YM+LRK+F ++L +F  +H   D++PK+L
Sbjct: 123 FVEDTCCMKPRLHIKLNTDAIVVEDTICGTKYMELRKVFHSKLVDFRKAH-PKDEIPKEL 179

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BLAST of Cucsa.079770.1 vs. TrEMBL
Match: A0A0A0L7I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G394670 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 2.0e-92
Identity = 205/333 (61.56%), Postives = 229/333 (68.77%), Query Frame = 1


Query: 55  MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 114
           MADASN++SS SS TLPFKS K L SNS SLL+DPQSLSS+TPEKP +   R R  KV+L
Sbjct: 1   MADASNKISSRSS-TLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVE---RNRKRKVAL 60

Query: 115 SIKAIKRATQSVPESNPLLPLDLPT--------------EESKSMLCKLFYSSDSAMRLL 174
           SIK +K+A QSV ESN  L  DL T               ES+S   K    + S     
Sbjct: 61  SIKEVKQAAQSVHESNRQLHHDLTTRGSKLVRRQMDSWSNESQSSRSKTCVDNKSNKLPE 120

Query: 175 RFK-------------------GVASNFSNVCPKIEALTD-RFPCRHLAQFKFILPEAIV 234
           +F+                   GVASNFS+VC KIE LTD RF   HLAQ KFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSSVCTKIEVLTDRRFSYSHLAQLKFILPEAIM 180

Query: 235 LKKVVVYDERTSCMKPDLHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPK 294
           LKKVVV+   TSCMKPDLHISFNFGVLE+KEDQYMQLRKLFR RLSEFVSSH E DD+PK
Sbjct: 181 LKKVVVFYGLTSCMKPDLHISFNFGVLESKEDQYMQLRKLFRTRLSEFVSSHPEIDDIPK 240

Query: 295 DLLPNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKS 354
           D LPNPFNFRS  +  ++N LS +KTSIEQLAPEQP+PS E I  NHHSE NQGFRI+KS
Sbjct: 241 DSLPNPFNFRSLNLFPETNSLSSVKTSIEQLAPEQPLPSAEDIPSNHHSENNQGFRIIKS 300

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BLAST of Cucsa.079770.1 vs. TrEMBL
Match: A0A072VLQ6_MEDTR (DNA replication factor CDT1-like protein OS=Medicago truncatula GN=MTR_1g070170 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.2e-42
Identity = 128/335 (38.21%), Postives = 176/335 (52.54%), Query Frame = 1


Query: 55  MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKL--STRTRNCKV 114
           M  +S   S SS +T   +S KP   +SKSL +DP  L++KTPEK  +     RTRN  V
Sbjct: 1   MKTSSETPSQSSHNT---RSKKPNLRSSKSLFKDPIELTTKTPEKSLEKPPPMRTRNRGV 60

Query: 115 SLSIKAIKRATQSVPE---------------SNPLLPLDLPTEESKSM--------LCKL 174
           +LSI  I++  + + +               +   + L  P + S+S         L + 
Sbjct: 61  ALSISDIRKVAKGLQDQKKQSNETTSLKGKSARRQITLASPRKSSESSNLPEKYENLGEF 120

Query: 175 FYSSDSAMRLLRFKGVASNFSNVCPKIEALTD-RFPCRHLAQFKFILPEAIVLKKVVVYD 234
           F S DS++RLLR KG  ++F+N+ PKIE LTD RF   HLAQ KFILPEAI +KK++V+D
Sbjct: 121 FDSLDSSIRLLRLKGSMTSFNNIRPKIETLTDRRFTHAHLAQLKFILPEAIAIKKLLVFD 180

Query: 235 ERTSCMKPDLHISFN-----FGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLL 294
           ERTSCMKPDLH+S N     F      E   M LRKLFR RL+EF  SH E D+VP+++L
Sbjct: 181 ERTSCMKPDLHVSINPDAVEFNAKLLSESGTMSLRKLFRVRLNEFWKSHPEGDEVPEEML 240

Query: 295 PNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMH 352
           P PF+   Q+ +            +  + P    P+++       S+         S  H
Sbjct: 241 PEPFSRPKQDPL------------VHMMKPPSSFPAVKLSVARASSDIADNTDPANSESH 300

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BLAST of Cucsa.079770.1 vs. TrEMBL
Match: B9T2A2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0463570 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.3e-40
Identity = 124/331 (37.46%), Postives = 176/331 (53.17%), Query Frame = 1


Query: 62  VSSSSSSTLPFKSNKPLRS---NSKSLLQDPQSLSSKTPEK-PAKL-STRTRNCKVSLSI 121
           +SSS SS +P+KS KPL+S    SKS L +P  ++++TP+K PA+L S R RN  V+LS+
Sbjct: 1   MSSSRSSPIPYKSKKPLKSATPKSKSKLSNP--IATQTPDKQPAELPSRRLRNRGVALSL 60

Query: 122 KAIKRATQSVPESNPLLPLDL-----------PTE----------------ESKSMLCKL 181
           K +++  Q   + N    + +           P E                E   +L + 
Sbjct: 61  KEVRKIAQGNADINKGGGVHIVKSARRQISTWPEESTGGEKSNKQPEEKIPEGYEILSEF 120

Query: 182 FYSSDSAMRLLRFKGVASNFSNVCPKIEALTDR-FPCRHLAQFKFILPEAIVLKKVVVYD 241
           F   DS +RL+R KG     +N+ PKIE LTDR F   HLAQ K+ILPEAI + +V+V+D
Sbjct: 121 FDCLDSTIRLMRLKGSMPTLTNISPKIECLTDRRFDHGHLAQMKYILPEAIEITRVLVFD 180

Query: 242 ERTSCMKPDLHISFNFGVLE-----NKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLL 301
           ER+SCMKPDLH+S N   +E       E + + LRK+FRARL +F  +H E D++PK+LL
Sbjct: 181 ERSSCMKPDLHVSLNVDAIECDVNLKSESKNLHLRKVFRARLEDFYKAHPEGDEIPKELL 240

Query: 302 PNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMH 355
           P PFN    ++ + +   S   + IE  A                     G ++ KS + 
Sbjct: 241 PEPFNRSKLDLSSGTTKPSTSLSIIETPA---------------------GTQMAKSQLP 298

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BLAST of Cucsa.079770.1 vs. TrEMBL
Match: V4TUC7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019292mg PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 121/336 (36.01%), Postives = 177/336 (52.68%), Query Frame = 1


Query: 63  SSSSSSTLPFKSNKPLRSNSKSLLQD----PQSLSSKTPEKPAKLSTRTRNCKVSLSIKA 122
           SS S  ++PF+  KP+ +  K  + D    P  L+SKTPEK    S R RN +++LS+K 
Sbjct: 3   SSDSPQSIPFRCKKPITAKGKPEMSDQNPNPTQLASKTPEKQP--SRRARNSRMALSLKE 62

Query: 123 IKRATQSVPESNPLLPLDLPTE-----------------------ESKSMLCKLFYSSDS 182
           I++A Q+ P+  P   ++   +                       E    L + F S D+
Sbjct: 63  IRKAAQTKPQQPPKDQIESAGKQISASPSVKSPVNPAGSGSPKLPEKYMQLAECFDSLDA 122

Query: 183 AMRLLRFKGVASNFSNVCPKIEALTDR-FPCRHLAQFKFILPEAIVLKKVVVYDERTSCM 242
            +RLL+ K  +  FS++CPKIE LTDR F   HLAQ KFILPE I +KKV+ +DE+TSCM
Sbjct: 123 VIRLLKLKCSSPTFSSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCM 182

Query: 243 KPDLHISFNFGVLE-----NKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNF 302
           KPDLH++ N   +E         + + LR +FRARL +F+  H E D++P++ LP PFN 
Sbjct: 183 KPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFN- 242

Query: 303 RSQ-----EVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVK--SIM 355
           RS+      +V  S  L+P  +  +    +Q + S          + ++   IVK  SI 
Sbjct: 243 RSRSDLQLNMVKNSTSLTPADSPTDASVEQQQVSS-------PTCQNSKLLNIVKAPSIS 302

[Close]

BLAST of Cucsa.079770.1 vs. TrEMBL
Match: V4T9W2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019292mg PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 121/336 (36.01%), Postives = 177/336 (52.68%), Query Frame = 1


Query: 63  SSSSSSTLPFKSNKPLRSNSKSLLQD----PQSLSSKTPEKPAKLSTRTRNCKVSLSIKA 122
           SS S  ++PF+  KP+ +  K  + D    P  L+SKTPEK    S R RN +++LS+K 
Sbjct: 3   SSDSPQSIPFRCKKPITAKGKPEMSDQNPNPTQLASKTPEKQP--SRRARNSRMALSLKE 62

Query: 123 IKRATQSVPESNPLLPLDLPTE-----------------------ESKSMLCKLFYSSDS 182
           I++A Q+ P+  P   ++   +                       E    L + F S D+
Sbjct: 63  IRKAAQTKPQQPPKDQIESAGKQISASPSVKSPVNPAGSGSPKLPEKYMQLAECFDSLDA 122

Query: 183 AMRLLRFKGVASNFSNVCPKIEALTDR-FPCRHLAQFKFILPEAIVLKKVVVYDERTSCM 242
            +RLL+ K  +  FS++CPKIE LTDR F   HLAQ KFILPE I +KKV+ +DE+TSCM
Sbjct: 123 VIRLLKLKCSSPTFSSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCM 182

Query: 243 KPDLHISFNFGVLE-----NKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNF 302
           KPDLH++ N   +E         + + LR +FRARL +F+  H E D++P++ LP PFN 
Sbjct: 183 KPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFN- 242

Query: 303 RSQ-----EVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVK--SIM 355
           RS+      +V  S  L+P  +  +    +Q + S          + ++   IVK  SI 
Sbjct: 243 RSRSDLQLNMVKNSTSLTPADSPTDASVEQQQVSS-------PTCQNSKLLNIVKAPSIS 302

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BLAST of Cucsa.079770.1 vs. TAIR10
Match: AT2G31270.1 (AT2G31270.1 homolog of yeast CDT1 A)

HSP 1 Score: 129.8 bits (325), Expect = 3.3e-30
Identity = 93/268 (34.70%), Postives = 143/268 (53.36%), Query Frame = 1


Query: 66  SSSTLPFKSNKPL-----RSNSKSLLQDPQSLSSKTPEKPAK---LSTRTRNCKVSLSIK 125
           SS ++PFKS K L      S S++   +P S++  TPEKP +     +R R+  +S+  K
Sbjct: 6   SSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVALSV--K 65

Query: 126 AIKRATQSVPESNPLLPLDLPTE--------------------------ESKSMLCKLFY 185
            I++A  S   S   +     +                           E    L K F 
Sbjct: 66  EIRQAAGSRRRSEDPVASSAKSRLFFDSSSSSPSKRKSSNKNAEKEKLPEKYENLGKFFE 125

Query: 186 SSDSAMRLLRFKGVASNFSNVCPKIEALTDRFPC-RHLAQFKFILPEAIVLKKVVVYDER 245
           + D++M L + +G    FSN+  +IE LT+R  C  HLAQ K ILPEAI +K+V+++DE 
Sbjct: 126 ALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILPEAIEIKRVLIHDET 185

Query: 246 TSCMKPDLHISFNFGVLE-----NKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPN 293
           T CMKPDLH++ N   +E       E + + LRK+FRARL++FV +H + D+VP++ LP 
Sbjct: 186 TCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRARLADFVKAHPQGDEVPEEPLPE 245

[Close]

BLAST of Cucsa.079770.1 vs. TAIR10
Match: AT3G54710.1 (AT3G54710.1 homolog of yeast CDT1 B homolog of yeast CDT1 B)

HSP 1 Score: 119.8 bits (299), Expect = 3.4e-27
Identity = 77/186 (41.40%), Postives = 109/186 (58.60%), Query Frame = 1


Query: 91  SLSSKTPEKPAKLSTRTRNCKVSLSIKAIKR---ATQSVPESNPLLPLDLPTEESKSMLC 150
           S S    EKP  +S    + K    IK +KR   ++   PES   LP      E   +L 
Sbjct: 3   SSSKIDSEKPVMVSESLFSTKTP--IKTVKRQIFSSSPKPESVIKLP------ERFEILE 62

Query: 151 KLFYSSDSAMRLLRFKGVASNFSNVCPKIEALTDR-FPCRHLAQFKFILPEAIVLKKVVV 210
           + F   D+A+RLL+ KG ++ ++N+CPKIE LT+R F   HLAQ K I PEAI LK+V+ 
Sbjct: 63  EFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNRIFSYDHLAQMKHIYPEAIELKRVLK 122

Query: 211 YDERTSCMKPDLHISFNFGVLENKE----DQYMQLRKLFRARLSEFVSSHRESDDVPKDL 269
           + E T CMKP LHI  N   +  ++     +YM+LRK+F ++L +F  +H   D++PK+L
Sbjct: 123 FVEDTCCMKPRLHIKLNTDAIVVEDTICGTKYMELRKVFHSKLVDFRKAH-PKDEIPKEL 179

[Close]

BLAST of Cucsa.079770.1 vs. NCBI nr
Match: gi|778726464|ref|XP_011659102.1| (PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 469.9 bits (1208), Expect = 3.9e-129
Identity = 261/317 (82.33%), Postives = 266/317 (83.91%), Query Frame = 1


Query: 55  MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 114
           MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL
Sbjct: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60

Query: 115 SIKAIKRATQSVPESNPLLPLDLPTEESKS------MLCKLFYSSDSAMRLLRFKGVASN 174
           SIKAIKRATQSVPESNPLLPLDLPTEESKS      +L     S D+  + L  K   S 
Sbjct: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEKCFVS- 120

Query: 175 FSNV------CPKIEALTDRFPCRHLAQFKFILPE-----AIVLKKVVVYDERTSCMKPD 234
           FS V      C  ++ L       H     F L       AIVLKKVVVYDERTSCMKPD
Sbjct: 121 FSIVRILQCGCCDLKVL-------HPTSLTFALRSKPSLIAIVLKKVVVYDERTSCMKPD 180

Query: 235 LHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAK 294
           LHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAK
Sbjct: 181 LHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAK 240

Query: 295 SNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLS 354
           SNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLS
Sbjct: 241 SNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLS 300

[Close]

BLAST of Cucsa.079770.1 vs. NCBI nr
Match: gi|659111691|ref|XP_008455861.1| (PREDICTED: CDT1-like protein b [Cucumis melo])

HSP 1 Score: 456.4 bits (1173), Expect = 4.4e-125
Identity = 251/331 (75.83%), Postives = 270/331 (81.57%), Query Frame = 1


Query: 55  MADASNEVS----SSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNC 114
           MADAS ++S    SSSSSTLPFKS KPLRSNSKSLL+DPQSLSSKTPEKPA+LSTRTRN 
Sbjct: 1   MADASKKISSSSSSSSSSTLPFKSKKPLRSNSKSLLEDPQSLSSKTPEKPAELSTRTRNR 60

Query: 115 KVSLSIKAIKRATQSVPESNPLLPLDLPTEESKSMLCKLFYSS----------------- 174
           KV+LSIK +KRA  SV +SN  LPL L  EESKS+  ++   S                 
Sbjct: 61  KVALSIKEVKRAALSVTQSNRQLPLHLAIEESKSVRRQIDLWSNESQSVDNKSKKFPEKF 120

Query: 175 ----------DSAMRLLRFKGVASNFSNVCPKIEALTD-RFPCRHLAQFKFILPEAIVLK 234
                     DSAMRLLRFKGVASNFSNVCPKIEALTD RF   HLAQFKFIL EAIVLK
Sbjct: 121 EMLCKFFYSLDSAMRLLRFKGVASNFSNVCPKIEALTDRRFTYGHLAQFKFILREAIVLK 180

Query: 235 KVVVYDERTSCMKPDLHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDL 294
           KV+VYDERT CMKPDLHISFNFGV EN+EDQYMQLRKLFRARLSEFVSS+ E+DDVPKDL
Sbjct: 181 KVLVYDERTCCMKPDLHISFNFGVPENQEDQYMQLRKLFRARLSEFVSSYPETDDVPKDL 240

Query: 295 LPNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIM 354
           LPNPFNFRSQ++VAKSN LS IKTSIEQLAPEQPMPSIEGISFNHHSEE+QGFR+VKS M
Sbjct: 241 LPNPFNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGISFNHHSEEHQGFRMVKSTM 300

[Close]

BLAST of Cucsa.079770.1 vs. NCBI nr
Match: gi|659123165|ref|XP_008461526.1| (PREDICTED: CDT1-like protein b [Cucumis melo])

HSP 1 Score: 448.7 bits (1153), Expect = 9.2e-123
Identity = 244/327 (74.62%), Postives = 265/327 (81.04%), Query Frame = 1


Query: 55  MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 114
           MADAS ++SSSSSSTLPFK  KPL SN KSLL+D QSLSSKTPEKPA+LSTR+RN KV+L
Sbjct: 1   MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVAL 60

Query: 115 SIKAIKRATQSVPESNPLLPLDLPTEESKSMLCKLFYSS--------------------- 174
           SIK +K+A +SV ESN  LPLDL TEE KS+  ++   S                     
Sbjct: 61  SIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSNESQSVENKSRKLPEKFEMLC 120

Query: 175 ------DSAMRLLRFKGVASNFSNVCPKIEALTD-RFPCRHLAQFKFILPEAIVLKKVVV 234
                 DSAMRLLR KGVASNFSNVCPK+EALTD RF   HLAQFKFILPEAIVLKKVVV
Sbjct: 121 KFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDRRFSYGHLAQFKFILPEAIVLKKVVV 180

Query: 235 YDERTSCMKPDLHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNP 294
           YDE+T CMKPDLHISFNF VLENKEDQYMQLRKLFRARLSEFVSS+ E+ DVPKDLLPNP
Sbjct: 181 YDEQTCCMKPDLHISFNFAVLENKEDQYMQLRKLFRARLSEFVSSYPETHDVPKDLLPNP 240

Query: 295 FNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTG 354
           FNFRSQ++VAKSN LS IKTSIEQLAPEQPMPSIEGI FNHHSEENQGFRIVKS M ++G
Sbjct: 241 FNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGICFNHHSEENQGFRIVKSTMSISG 300

[Close]

BLAST of Cucsa.079770.1 vs. NCBI nr
Match: gi|778726467|ref|XP_011659103.1| (PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 407.5 bits (1046), Expect = 2.3e-110
Identity = 226/302 (74.83%), Postives = 239/302 (79.14%), Query Frame = 1


Query: 55  MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 114
           MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL
Sbjct: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60

Query: 115 SIKAIKRATQSVPESNPLLPLDLPTEESKSMLCKLFYSSDSAMRLLRFKGVASNFSNVCP 174
           SIKAIKRATQSVPESNPLLPLDLPTEESKS+  ++                    SN   
Sbjct: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQI-----------------DLLSNESQ 120

Query: 175 KIEALTDRFPCRHLAQFKF--ILPEAIVLKKVVVYDERTSCMKPDLHISFNFGVLENKED 234
            ++  + + P +    F    IL       KV+     T  ++          ++ENKED
Sbjct: 121 SVDNKSKKLPEKCFVSFSIVRILQCGCCDLKVLHPTSLTFALRSKP------SLIENKED 180

Query: 235 QYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAKSNLLSPIKTSIEQLA 294
           QYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAKSNLLSPIKTSIEQLA
Sbjct: 181 QYMQLRKLFRARLSEFVSSHRESDDVPKDLLPNPFNFRSQEVVAKSNLLSPIKTSIEQLA 240

Query: 295 PEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLSHFSPSFSRRFSQKVV 354
           PEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLSHFSPSFSRRFSQKVV
Sbjct: 241 PEQPMPSIEGISFNHHSEENQGFRIVKSIMHVTGPTKQKEFIGLSHFSPSFSRRFSQKVV 279

[Close]

BLAST of Cucsa.079770.1 vs. NCBI nr
Match: gi|659093245|ref|XP_008447443.1| (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo])

HSP 1 Score: 377.5 bits (968), Expect = 2.6e-101
Identity = 216/333 (64.86%), Postives = 241/333 (72.37%), Query Frame = 1


Query: 55  MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 114
           MADAS+ +SS SS TLPFKS K L SN KSLL+DPQSLSSKTPEKPA+   RTR  KV+L
Sbjct: 1   MADASHNISSPSS-TLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAE---RTRKRKVAL 60

Query: 115 SIKAIKRATQSVPESNPLLPLDLPTEESKSMLCKLFYSSDSAMR---------------- 174
           SIK +KRA QSV ESN  LP DL T+ SK +  ++  SS+ ++                 
Sbjct: 61  SIKEVKRAAQSVNESNRQLPHDLTTKGSKLVRRQMDSSSNESLSSRSKTCVDKKSNKLPE 120

Query: 175 ----LLRFK-------------GVASNFSNVCPKIEALTD-RFPCRHLAQFKFILPEAIV 234
               L +F              GVASNFSNVC KIE LTD RF   HLAQ KFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSNVCTKIEVLTDRRFSYNHLAQLKFILPEAIM 180

Query: 235 LKKVVVYDERTSCMKPDLHISFNFGVLENKEDQYMQLRKLFRARLSEFVSSHRESDDVPK 294
           LKKVVV+DERTSCMKPDLHISFNF +LE+KEDQYMQLRKLFR RLSEF SSH E DDVPK
Sbjct: 181 LKKVVVFDERTSCMKPDLHISFNFDILESKEDQYMQLRKLFRTRLSEFASSHPEIDDVPK 240

Query: 295 DLLPNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIVKS 354
           DLLPNPFNFRSQ +  K+N LS +KTSIEQL PEQPMPS EG+  NHH EENQGFRI+KS
Sbjct: 241 DLLPNPFNFRSQNLFPKTNPLSSVKTSIEQLGPEQPMPSAEGLLSNHHLEENQGFRIIKS 300

The following BLAST results are available for this feature:

BLAST of Cucsa.079770.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CDT1A_ARATH	5.9e-29	34.70	CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1	[more]
CDT1B_ARATH	6.1e-26	41.40	CDT1-like protein b OS=Arabidopsis thaliana GN=CDT1B PE=1 SV=1	[more]

BLAST of Cucsa.079770.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7I7_CUCSA	2.0e-92	61.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G394670 PE=4 SV=1	[more]
A0A072VLQ6_MEDTR	7.2e-42	38.21	DNA replication factor CDT1-like protein OS=Medicago truncatula GN=MTR_1g070170 ...	[more]
B9T2A2_RICCO	2.3e-40	37.46	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0463570 PE=4 SV=1	[more]
V4TUC7_9ROSI	1.2e-39	36.01	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019292mg PE=4 SV=1	[more]
V4T9W2_9ROSI	1.2e-39	36.01	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019292mg PE=4 SV=1	[more]

BLAST of Cucsa.079770.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31270.1	3.3e-30	34.70	homolog of yeast CDT1 A	[more]
AT3G54710.1	3.4e-27	41.40	homolog of yeast CDT1 B homolog of yeast CDT1 B	[more]

BLAST of Cucsa.079770.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726464\|ref\|XP_011659102.1\|	3.9e-129	82.33	PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|659111691\|ref\|XP_008455861.1\|	4.4e-125	75.83	PREDICTED: CDT1-like protein b [Cucumis melo]	[more]
gi\|659123165\|ref\|XP_008461526.1\|	9.2e-123	74.62	PREDICTED: CDT1-like protein b [Cucumis melo]	[more]
gi\|778726467\|ref\|XP_011659103.1\|	2.3e-110	74.83	PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis sativus]	[more]
gi\|659093245\|ref\|XP_008447443.1\|	2.6e-101	64.86	PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR014939	CDT1_Gemini-bd-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.079770	Cucsa.079770	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.079770.1	Cucsa.079770.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.079770.1.CDS.5	Cucsa.079770.1.CDS.5	CDS
Cucsa.079770.1.CDS.4	Cucsa.079770.1.CDS.4	CDS
Cucsa.079770.1.CDS.3	Cucsa.079770.1.CDS.3	CDS
Cucsa.079770.1.CDS.2	Cucsa.079770.1.CDS.2	CDS
Cucsa.079770.1.CDS.1	Cucsa.079770.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 141..267 score: 2.04
IPR014939	CDT1 Geminin-binding domain-like	PFAM	PF08839	CDT1	coord: 145..221 score: 2.
IPR014939	CDT1 Geminin-binding domain-like	SMART	SM01075	CDT1_2	coord: 137..265 score: 2.
None	No IPR available	PANTHER	PTHR28637	FAMILY NOT NAMED	coord: 145..350 score: 6.3
None	No IPR available	PANTHER	PTHR28637:SF1	DNA REPLICATION FACTOR CDT1	coord: 145..350 score: 6.3