Cucsa.069210 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.069210
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ring finger protein, putative
Location	scaffold00714 : 83581 .. 84252 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACGACGACGACGATGCCTCCCTCTTATATCCGCCCTCCTACACACGTTACGCTCTCAGCGGCAAAATCATGCTCGGCGCAATCATTTTATTATTATTTGTCGTCATCCTCATGATTTGTCTTCATCTCTACGTTCGATTGTTCCTACTCTCCTCCACCCCCCGCCCATCTCGTATCCGCCGCCGTCGCCGCCGTCAACACTTTGTTTTCACTGCCGAGCCTCGAATCGCCGCCGCTGGTGTTCCGTCGCGTGGTTTGCCGCAGTCGATTCTCAAGTCCCTACCCGTTTTCGTTCACTCGGAGAAAACCGACCCGGATCCGATTTACTGTGCGGTTTGTTTATCGGAATTTGAAGAGAACGAAATCGGACGGAGTATTCCGAAATGCAACCATAGCTTCCACGTGGGGTGTATTGATATGTGGTTTTATTCCCACGCGACTTGCCCGCTTTGTAGATCTGAGGTGAAACCCGAACCCGAATGTGAGTCCGGCCCGCATGATGACCCGGGGGAGATTGCCATTGATGTCTGTGAACTGGGTTCGAGATCTGGTGAGGAAGAAACGGATCATCGGTGTCCGGTTGAGATGGCGGCGTCGGTGGAGGTGGTGGATGATGAGTCGAGGCATGTGAACGACATGTCGGATGATGGGACGTCGAGGGCAACG

mRNA sequence

ATGGCCGACGACGACGACGATGCCTCCCTCTTATATCCGCCCTCCTACACACGTTACGCTCTCAGCGGCAAAATCATGCTCGGCGCAATCATTTTATTATTATTTGTCGTCATCCTCATGATTTGTCTTCATCTCTACGTTCGATTGTTCCTACTCTCCTCCACCCCCCGCCCATCTCGTATCCGCCGCCGTCGCCGCCGTCAACACTTTGTTTTCACTGCCGAGCCTCGAATCGCCGCCGCTGGTGTTCCGTCGCGTGGTTTGCCGCAGTCGATTCTCAAGTCCCTACCCGTTTTCGTTCACTCGGAGAAAACCGACCCGGATCCGATTTACTGTGCGGTTTGTTTATCGGAATTTGAAGAGAACGAAATCGGACGGAGTATTCCGAAATGCAACCATAGCTTCCACGTGGGGTGTATTGATATGTGGTTTTATTCCCACGCGACTTGCCCGCTTTGTAGATCTGAGGTGAAACCCGAACCCGAATGTGAGTCCGGCCCGCATGATGACCCGGGGGAGATTGCCATTGATGTCTGTGAACTGGGTTCGAGATCTGGTGAGGAAGAAACGGATCATCGGTGTCCGGTTGAGATGGCGGCGTCGGTGGAGGTGGTGGATGATGAGTCGAGGCATGTGAACGACATGTCGGATGATGGGACGTCGAGGGCAACG

Coding sequence (CDS)

ATGGCCGACGACGACGACGATGCCTCCCTCTTATATCCGCCCTCCTACACACGTTACGCTCTCAGCGGCAAAATCATGCTCGGCGCAATCATTTTATTATTATTTGTCGTCATCCTCATGATTTGTCTTCATCTCTACGTTCGATTGTTCCTACTCTCCTCCACCCCCCGCCCATCTCGTATCCGCCGCCGTCGCCGCCGTCAACACTTTGTTTTCACTGCCGAGCCTCGAATCGCCGCCGCTGGTGTTCCGTCGCGTGGTTTGCCGCAGTCGATTCTCAAGTCCCTACCCGTTTTCGTTCACTCGGAGAAAACCGACCCGGATCCGATTTACTGTGCGGTTTGTTTATCGGAATTTGAAGAGAACGAAATCGGACGGAGTATTCCGAAATGCAACCATAGCTTCCACGTGGGGTGTATTGATATGTGGTTTTATTCCCACGCGACTTGCCCGCTTTGTAGATCTGAGGTGAAACCCGAACCCGAATGTGAGTCCGGCCCGCATGATGACCCGGGGGAGATTGCCATTGATGTCTGTGAACTGGGTTCGAGATCTGGTGAGGAAGAAACGGATCATCGGTGTCCGGTTGAGATGGCGGCGTCGGTGGAGGTGGTGGATGATGAGTCGAGGCATGTGAACGACATGTCGGATGATGGGACGTCGAGGGCAACG

Protein sequence

MADDDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCELGSRSGEEETDHRCPVEMAASVEVVDDESRHVNDMSDDGTSRAT

Homology

[Close]

BLAST of Cucsa.069210 vs. Swiss-Prot
Match: ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2)

HSP 1 Score: 176.8 bits (447), Expect = 2.7e-43
Identity = 99/183 (54.10%), Postives = 120/183 (65.57%), Query Frame = 1


Query: 19  YALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVF-TAEPR 78
           YA+SGKIML AI++L FVVILM+ LHLY R +LL +  R  R R R RR   VF TA+P 
Sbjct: 24  YAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPS 83

Query: 79  IAAAGV-PSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPKCNHSFH 138
            AA  V  SRGL  +++KSLPVF  S++T  DPI CAVCLSEFEE+E GR +P C H+FH
Sbjct: 84  TAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFH 143

Query: 139 VGCIDMWFYSHATCPLCRSEVKPEPECES--GPHDDPGEIAID-----VCELGSRSGEEE 193
           V CIDMWF+SH+TCPLCRS V+     ES     +    IA+D     V E  S SG  +
Sbjct: 144 VDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPVLVIEPSSSSGLTD 203

[Close]

BLAST of Cucsa.069210 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.6e-30
Identity = 78/190 (41.05%), Postives = 108/190 (56.84%), Query Frame = 1


Query: 17  TRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVFTAEP 76
           +RY+L+GKIML ++I+L   VIL++C H Y R        R +R  RRR   H    A  
Sbjct: 20  SRYSLNGKIMLASVIILFVAVILILCFHSYARWLFR----RQNRRIRRRISAHLRSLAAA 79

Query: 77  RIAAAGVPSRG-LPQSILKSLPVFVHSEKTDPDPIY-CAVCLSEFEENEIGRSIPKCNHS 136
           R       S   L  ++L+ +P+FV+S KT   P+  C+VCLSEFEE++ GR +PKC H 
Sbjct: 80  RDPTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHV 139

Query: 137 FHVGCIDMWFYSHATCPLCRSEVKP-EPECESGPHDD--PGEIAIDVCELGSRSGEEETD 196
           FHV CID WF S ++CPLCR+ V+P +P  E  P     P    I+  E GS S  +E++
Sbjct: 140 FHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESE 199

Query: 197 HRCPVEMAAS 202
              P   + S
Sbjct: 200 SSTPSSSSGS 205

[Close]

BLAST of Cucsa.069210 vs. Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.8e-30
Identity = 68/144 (47.22%), Postives = 88/144 (61.11%), Query Frame = 1


Query: 19  YALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVFTAEPRI 78
           YAL+GKIML ++I+L   VI+++C H Y R           RIRRR R      +A PR 
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHN---RRIRRRIRSHLRTLSASPR- 81

Query: 79  AAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIY---CAVCLSEFEENEIGRSIPKCNHSF 138
                  + L Q++L  +P+FV+S K  P P     C+VCLSEFEE + GR +PKC HSF
Sbjct: 82  ------DQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSF 141

Query: 139 HVGCIDMWFYSHATCPLCRSEVKP 160
           HV CID WF S +TCPLCR+ V+P
Sbjct: 142 HVDCIDTWFRSRSTCPLCRAPVQP 155

[Close]

BLAST of Cucsa.069210 vs. Swiss-Prot
Match: ATL17_ARATH (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 9.8e-30
Identity = 75/198 (37.88%), Postives = 107/198 (54.04%), Query Frame = 1


Query: 26  MLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVFTAEPRIAAAGVPS 85
           ML   IL+L +VILM+ LHLY R +LL S+P        R      F  +P    +  P 
Sbjct: 1   MLTTTILILLIVILMVSLHLYYRWYLLRSSPF------NRTTAASTFFTDP----SSTPG 60

Query: 86  RGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPKCNHSFHVGCIDMWFY 145
            GL  SI+KSLP+F  S  T    + C+VCLSEF++NE GR +P C H+FHV CIDMWF+
Sbjct: 61  -GLNPSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFH 120

Query: 146 SHATCPLCRSEVKPEPECESGPHDDPGEIAIDVC-----ELGSRSGEEETDHRCPVEMAA 205
           SH++CPLCRS+++P      G      E+AI +      +     G E T    P +   
Sbjct: 121 SHSSCPLCRSQIEP---FAGGVKSSMDEVAISISDPVYGDTNHHEGTETTGDSVPEDSQR 180

Query: 206 SVEVVDDESRHVNDMSDD 219
               ++   R++ ++ +D
Sbjct: 181 KPAAIEISQRNLGEIEND 184

[Close]

BLAST of Cucsa.069210 vs. Swiss-Prot
Match: ATL60_ARATH (RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-22
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 1


Query: 23  GKIMLGAIILLLFVVILMICLHLYVRLF------------LLSSTPRPSRIRRRRRRQHF 82
           GK++L +I+ +   ++ ++ LHLY RLF            + S  P  + I R  RR+ F
Sbjct: 22  GKVLLFSIVSIFTGILFLLLLHLYARLFWWRVEQHFNLNLIQSDDPGSTVIGRNPRRRRF 81

Query: 83  VFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPK 142
           VF          + + GL   IL+S+ V V       D + CAVCLS+  + +  R +P+
Sbjct: 82  VFAQSQEDP---LHNAGLDSKILQSIHVVVFKCTDFKDGLECAVCLSDLVDGDKARVLPR 141

Query: 143 CNHSFHVGCIDMWFYSHATCPLCRSEV 158
           CNH FHV CIDMWF SH+TCPLCR+ V
Sbjct: 142 CNHGFHVDCIDMWFQSHSTCPLCRNTV 165

[Close]

BLAST of Cucsa.069210 vs. TrEMBL
Match: A0A0A0KF25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318710 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 9.3e-128
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1


Query: 1   MADDDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSR 60
           MADDDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSR
Sbjct: 1   MADDDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSR 60

Query: 61  IRRRRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFE 120
           IRRRRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFE
Sbjct: 61  IRRRRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFE 120

Query: 121 ENEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCE 180
           ENEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCE
Sbjct: 121 ENEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCE 180

Query: 181 LGSRSGEEETDHRCPVEMAASVEVVDDESRHVNDMSDDGTSRAT 225
           LGSRSGEEETDHRCPVEMAASVEVVDDESRHVNDMSDDGTSRAT
Sbjct: 181 LGSRSGEEETDHRCPVEMAASVEVVDDESRHVNDMSDDGTSRAT 224

[Close]

BLAST of Cucsa.069210 vs. TrEMBL
Match: B9RT88_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_0682030 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.6e-49
Identity = 101/169 (59.76%), Postives = 123/169 (72.78%), Query Frame = 1


Query: 19  YALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVFTAEPRI 78
           YALSGKIML AII+L FVVI+M+CLHLY R +LL++  R  R R R RR H +F  +P  
Sbjct: 18  YALSGKIMLSAIIILFFVVIMMVCLHLYARWYLLNARRRQHR-RARNRRAHLIFYVDPSN 77

Query: 79  A-AAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPKCNHSFHV 138
           A    VPSRGL  ++L +LPVF +S KT PDPI CAVCLSEFEENE GR++PKCNHSFH+
Sbjct: 78  ANNVTVPSRGLDAAVLNTLPVFAYSSKTHPDPIECAVCLSEFEENERGRTLPKCNHSFHI 137

Query: 139 GCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCELGSRSG 187
            CIDMWF+SH+TCPLCRS V+P PE       D   +  ++ E GSR+G
Sbjct: 138 ECIDMWFHSHSTCPLCRSAVEPVPE-------DSVRVNSEINETGSRAG 178

[Close]

BLAST of Cucsa.069210 vs. TrEMBL
Match: A0A067JV40_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18911 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.6e-47
Identity = 103/171 (60.23%), Postives = 124/171 (72.51%), Query Frame = 1


Query: 19  YALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVF---TAE 78
           YA+SG+IML AI++L FVVILM+CLHLY R +LL++  R  R R R RR H VF    ++
Sbjct: 17  YAISGRIMLSAIVILFFVVILMVCLHLYARWYLLNARRRQIR-RVRNRRTHLVFYVDPSD 76

Query: 79  PRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPKCNHSF 138
           P  A   VPSRGL  ++LKSLPVF +S KT PD I CAVCLSEFEENE GR++PKCNHSF
Sbjct: 77  PNAAHVTVPSRGLDPAVLKSLPVFDYSSKTHPDSIECAVCLSEFEENEKGRTLPKCNHSF 136

Query: 139 HVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCELGSRSG 187
           H+ CIDMWF+SH+TCPLCRS V+P PE  +   D   EI     E+GS SG
Sbjct: 137 HIECIDMWFHSHSTCPLCRSPVEPVPE-NAVQVDSSSEI----IEIGSDSG 181

[Close]

BLAST of Cucsa.069210 vs. TrEMBL
Match: M5XE39_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009161mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 4.0e-46
Identity = 97/185 (52.43%), Postives = 121/185 (65.41%), Query Frame = 1


Query: 4   DDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRR 63
           D D      P  Y  YA+SGKIML AII+L FVVILM+CLHLY R +LL +  R  R  R
Sbjct: 11  DPDHQDAFAPQPYKGYAVSGKIMLSAIIILFFVVILMVCLHLYARWYLLRARRRHLRRNR 70

Query: 64  RRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKT-------DPDPIYCAVCL 123
           R RR H +F  +P  A    P+RGL  SIL SLPVFV+S K+       +   + CAVCL
Sbjct: 71  RNRRTHIMFHEDPYAATLSTPTRGLDASILNSLPVFVYSSKSTETTQFREQPILECAVCL 130

Query: 124 SEFEENEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAI 182
           SEFE+ E GR +PKC HSFH+ CIDMWF+SH+TCPLCR+ V+P PE E+       ++ +
Sbjct: 131 SEFEDGEKGRLLPKCKHSFHIECIDMWFHSHSTCPLCRAPVEPGPESET-----RADVVL 190

[Close]

BLAST of Cucsa.069210 vs. TrEMBL
Match: V4RFV8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005780mg PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.0e-45
Identity = 100/175 (57.14%), Postives = 124/175 (70.86%), Query Frame = 1


Query: 19  YALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVFTAEPRI 78
           YALSG+IML +I++L FVVILM+CLHLY R +L+ +  R  R R R RR  FVF  +P  
Sbjct: 17  YALSGRIMLSSIVILFFVVILMVCLHLYARWYLVQARRRQVR-RHRHRRTQFVFYVDPTN 76

Query: 79  AAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPKCNHSFHVG 138
            +A   SRGL  S+LKSLPVFV+S KT  D + CAVCLSEFEENE GR +P CNHSFH+G
Sbjct: 77  PSA-TSSRGLDSSVLKSLPVFVYSSKTHADAMDCAVCLSEFEENESGRVLPGCNHSFHIG 136

Query: 139 CIDMWFYSHATCPLCRSEVK---PEPECESGPHDDPGEIAIDVCELGSRSGEEET 191
           CIDMWF+SH+TCPLCR+ V+    +PE    P D+P  + + V E GS S +E T
Sbjct: 137 CIDMWFHSHSTCPLCRTPVELVTAQPEDPVQP-DNPVPVRVSVHEPGSSSIDEPT 188

[Close]

BLAST of Cucsa.069210 vs. TAIR10
Match: AT3G16720.1 (AT3G16720.1 TOXICOS EN LEVADURA 2)

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-44
Identity = 99/183 (54.10%), Postives = 120/183 (65.57%), Query Frame = 1


Query: 19  YALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVF-TAEPR 78
           YA+SGKIML AI++L FVVILM+ LHLY R +LL +  R  R R R RR   VF TA+P 
Sbjct: 24  YAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPS 83

Query: 79  IAAAGV-PSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPKCNHSFH 138
            AA  V  SRGL  +++KSLPVF  S++T  DPI CAVCLSEFEE+E GR +P C H+FH
Sbjct: 84  TAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFH 143

Query: 139 VGCIDMWFYSHATCPLCRSEVKPEPECES--GPHDDPGEIAID-----VCELGSRSGEEE 193
           V CIDMWF+SH+TCPLCRS V+     ES     +    IA+D     V E  S SG  +
Sbjct: 144 VDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPVLVIEPSSSSGLTD 203

[Close]

BLAST of Cucsa.069210 vs. TAIR10
Match: AT3G62690.1 (AT3G62690.1 AtL5)

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-31
Identity = 78/190 (41.05%), Postives = 108/190 (56.84%), Query Frame = 1


Query: 17  TRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVFTAEP 76
           +RY+L+GKIML ++I+L   VIL++C H Y R        R +R  RRR   H    A  
Sbjct: 20  SRYSLNGKIMLASVIILFVAVILILCFHSYARWLFR----RQNRRIRRRISAHLRSLAAA 79

Query: 77  RIAAAGVPSRG-LPQSILKSLPVFVHSEKTDPDPIY-CAVCLSEFEENEIGRSIPKCNHS 136
           R       S   L  ++L+ +P+FV+S KT   P+  C+VCLSEFEE++ GR +PKC H 
Sbjct: 80  RDPTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHV 139

Query: 137 FHVGCIDMWFYSHATCPLCRSEVKP-EPECESGPHDD--PGEIAIDVCELGSRSGEEETD 196
           FHV CID WF S ++CPLCR+ V+P +P  E  P     P    I+  E GS S  +E++
Sbjct: 140 FHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESE 199

Query: 197 HRCPVEMAAS 202
              P   + S
Sbjct: 200 SSTPSSSSGS 205

[Close]

BLAST of Cucsa.069210 vs. TAIR10
Match: AT2G47560.1 (AT2G47560.1 RING/U-box superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 3.2e-31
Identity = 68/144 (47.22%), Postives = 88/144 (61.11%), Query Frame = 1


Query: 19  YALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVFTAEPRI 78
           YAL+GKIML ++I+L   VI+++C H Y R           RIRRR R      +A PR 
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHN---RRIRRRIRSHLRTLSASPR- 81

Query: 79  AAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIY---CAVCLSEFEENEIGRSIPKCNHSF 138
                  + L Q++L  +P+FV+S K  P P     C+VCLSEFEE + GR +PKC HSF
Sbjct: 82  ------DQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSF 141

Query: 139 HVGCIDMWFYSHATCPLCRSEVKP 160
           HV CID WF S +TCPLCR+ V+P
Sbjct: 142 HVDCIDTWFRSRSTCPLCRAPVQP 155

[Close]

BLAST of Cucsa.069210 vs. TAIR10
Match: AT4G15975.1 (AT4G15975.1 RING/U-box superfamily protein)

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-30
Identity = 75/198 (37.88%), Postives = 106/198 (53.54%), Query Frame = 1


Query: 26  MLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVFTAEPRIAAAGVPS 85
           ML   IL+L +VILM+ LHLY R +LL S+P        R      F  +P    +  P 
Sbjct: 1   MLTTTILILLIVILMVSLHLYYRWYLLRSSPF------NRTTAASTFFTDP----SSTPG 60

Query: 86  RGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPKCNHSFHVGCIDMWFY 145
            GL  SI+KSLP+F  S  T    + C+VCLSEF++NE GR +P C H+FHV CIDMWF+
Sbjct: 61  -GLNPSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVDCIDMWFH 120

Query: 146 SHATCPLCRSEVKPEPECESGPHDDPGEIAIDVC-----ELGSRSGEEETDHRCPVEMAA 205
           SH++CPLCRS ++P      G      E+AI +      +     G E T    P +   
Sbjct: 121 SHSSCPLCRSLIEP---FAGGVKSTMDEVAISISDPVYGDTNHHEGTETTGDSVPEDSQR 180

Query: 206 SVEVVDDESRHVNDMSDD 219
               ++   R++ ++ +D
Sbjct: 181 KPAAIEISQRNLGEIEND 184

[Close]

BLAST of Cucsa.069210 vs. TAIR10
Match: AT1G53820.1 (AT1G53820.1 RING/U-box superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 1


Query: 23  GKIMLGAIILLLFVVILMICLHLYVRLF------------LLSSTPRPSRIRRRRRRQHF 82
           GK++L +I+ +   ++ ++ LHLY RLF            + S  P  + I R  RR+ F
Sbjct: 22  GKVLLFSIVSIFTGILFLLLLHLYARLFWWRVEQHFNLNLIQSDDPGSTVIGRNPRRRRF 81

Query: 83  VFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPK 142
           VF          + + GL   IL+S+ V V       D + CAVCLS+  + +  R +P+
Sbjct: 82  VFAQSQEDP---LHNAGLDSKILQSIHVVVFKCTDFKDGLECAVCLSDLVDGDKARVLPR 141

Query: 143 CNHSFHVGCIDMWFYSHATCPLCRSEV 158
           CNH FHV CIDMWF SH+TCPLCR+ V
Sbjct: 142 CNHGFHVDCIDMWFQSHSTCPLCRNTV 165

[Close]

BLAST of Cucsa.069210 vs. NCBI nr
Match: gi|449465577|ref|XP_004150504.1| (PREDICTED: RING-H2 finger protein ATL2-like [Cucumis sativus])

HSP 1 Score: 464.2 bits (1193), Expect = 1.3e-127
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1


Query: 1   MADDDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSR 60
           MADDDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSR
Sbjct: 1   MADDDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSR 60

Query: 61  IRRRRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFE 120
           IRRRRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFE
Sbjct: 61  IRRRRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFE 120

Query: 121 ENEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCE 180
           ENEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCE
Sbjct: 121 ENEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCE 180

Query: 181 LGSRSGEEETDHRCPVEMAASVEVVDDESRHVNDMSDDGTSRAT 225
           LGSRSGEEETDHRCPVEMAASVEVVDDESRHVNDMSDDGTSRAT
Sbjct: 181 LGSRSGEEETDHRCPVEMAASVEVVDDESRHVNDMSDDGTSRAT 224

[Close]

BLAST of Cucsa.069210 vs. NCBI nr
Match: gi|659117077|ref|XP_008458410.1| (PREDICTED: RING-H2 finger protein ATL2-like [Cucumis melo])

HSP 1 Score: 392.9 bits (1008), Expect = 3.8e-106
Identity = 198/227 (87.22%), Postives = 203/227 (89.43%), Query Frame = 1


Query: 1   MADDDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSST---PR 60
           MADDDDD +L  PPSY RYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSS+   P 
Sbjct: 1   MADDDDDGTLFSPPSYRRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSSTHRPS 60

Query: 61  PSRIRRRRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLS 120
            SRIRRRRRR+HFVFTAEPRIAAAG PSRGLPQSILKSLPVFVH  KTDPDPIYCAVCLS
Sbjct: 61  RSRIRRRRRREHFVFTAEPRIAAAGAPSRGLPQSILKSLPVFVHLAKTDPDPIYCAVCLS 120

Query: 121 EFEENEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAID 180
           EFEENEIGRSIPKCNH FHVGCIDMWFYSH TCPLCRSEVKPEP C SGP    GEIAID
Sbjct: 121 EFEENEIGRSIPKCNHRFHVGCIDMWFYSHVTCPLCRSEVKPEPGCGSGP---CGEIAID 180

Query: 181 VCELGSRSGEEETDHRCPVEMAASVEVVDDESRHVNDMSDDGTSRAT 225
           V E+GSRSGEEE D  CPVEMAASVEVV+DESRHVNDMSDDGTSRAT
Sbjct: 181 VSEVGSRSGEEERDGGCPVEMAASVEVVEDESRHVNDMSDDGTSRAT 224

[Close]

BLAST of Cucsa.069210 vs. NCBI nr
Match: gi|255551823|ref|XP_002516957.1| (PREDICTED: RING-H2 finger protein ATL2 [Ricinus communis])

HSP 1 Score: 202.2 bits (513), Expect = 9.5e-49
Identity = 101/169 (59.76%), Postives = 123/169 (72.78%), Query Frame = 1


Query: 19  YALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVFTAEPRI 78
           YALSGKIML AII+L FVVI+M+CLHLY R +LL++  R  R R R RR H +F  +P  
Sbjct: 18  YALSGKIMLSAIIILFFVVIMMVCLHLYARWYLLNARRRQHR-RARNRRAHLIFYVDPSN 77

Query: 79  A-AAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPKCNHSFHV 138
           A    VPSRGL  ++L +LPVF +S KT PDPI CAVCLSEFEENE GR++PKCNHSFH+
Sbjct: 78  ANNVTVPSRGLDAAVLNTLPVFAYSSKTHPDPIECAVCLSEFEENERGRTLPKCNHSFHI 137

Query: 139 GCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCELGSRSG 187
            CIDMWF+SH+TCPLCRS V+P PE       D   +  ++ E GSR+G
Sbjct: 138 ECIDMWFHSHSTCPLCRSAVEPVPE-------DSVRVNSEINETGSRAG 178

[Close]

BLAST of Cucsa.069210 vs. NCBI nr
Match: gi|470121627|ref|XP_004296864.1| (PREDICTED: RING-H2 finger protein ATL2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 199.9 bits (507), Expect = 4.7e-48
Identity = 98/169 (57.99%), Postives = 120/169 (71.01%), Query Frame = 1


Query: 13  PPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVF 72
           P  Y  YALSGKIML AI++L FVVILM+CLHLY R +LL +  R  R  RR RR H +F
Sbjct: 20  PEPYKGYALSGKIMLSAIVVLFFVVILMVCLHLYARWYLLRARRRNLRRNRRSRRTHMLF 79

Query: 73  TAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIY-CAVCLSEFEENEIGRSIPKC 132
             E   A     +RGL +S+LKSLPVFV+  KT P+ +  CAVCLSEFEENE GR +PKC
Sbjct: 80  HDE-NAAGVSAATRGLDESVLKSLPVFVYDSKTHPEAVLECAVCLSEFEENETGRVLPKC 139

Query: 133 NHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCE 181
            HSFH+ CIDMWF+SH+TCPLCR  V+P PE      D+PG++ ++VCE
Sbjct: 140 KHSFHIECIDMWFHSHSTCPLCRCAVEPGPE-----SDNPGDVVLNVCE 182

[Close]

BLAST of Cucsa.069210 vs. NCBI nr
Match: gi|802701768|ref|XP_012083978.1| (PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas])

HSP 1 Score: 197.6 bits (501), Expect = 2.3e-47
Identity = 103/171 (60.23%), Postives = 124/171 (72.51%), Query Frame = 1


Query: 19  YALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRIRRRRRRQHFVF---TAE 78
           YA+SG+IML AI++L FVVILM+CLHLY R +LL++  R  R R R RR H VF    ++
Sbjct: 17  YAISGRIMLSAIVILFFVVILMVCLHLYARWYLLNARRRQIR-RVRNRRTHLVFYVDPSD 76

Query: 79  PRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSIPKCNHSF 138
           P  A   VPSRGL  ++LKSLPVF +S KT PD I CAVCLSEFEENE GR++PKCNHSF
Sbjct: 77  PNAAHVTVPSRGLDPAVLKSLPVFDYSSKTHPDSIECAVCLSEFEENEKGRTLPKCNHSF 136

Query: 139 HVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCELGSRSG 187
           H+ CIDMWF+SH+TCPLCRS V+P PE  +   D   EI     E+GS SG
Sbjct: 137 HIECIDMWFHSHSTCPLCRSPVEPVPE-NAVQVDSSSEI----IEIGSDSG 181

The following BLAST results are available for this feature:

BLAST of Cucsa.069210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL2_ARATH	2.7e-43	54.10	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2	[more]
ATL5_ARATH	2.6e-30	41.05	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1	[more]
ATL64_ARATH	5.8e-30	47.22	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1	[more]
ATL17_ARATH	9.8e-30	37.88	RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2 SV=2	[more]
ATL60_ARATH	2.6e-22	38.78	RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2 SV=1	[more]

BLAST of Cucsa.069210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF25_CUCSA	9.3e-128	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318710 PE=4 SV=1	[more]
B9RT88_RICCO	6.6e-49	59.76	Ring finger protein, putative OS=Ricinus communis GN=RCOM_0682030 PE=4 SV=1	[more]
A0A067JV40_JATCU	1.6e-47	60.23	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18911 PE=4 SV=1	[more]
M5XE39_PRUPE	4.0e-46	52.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009161mg PE=4 SV=1	[more]
V4RFV8_9ROSI	2.0e-45	57.14	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005780mg PE=4 SV=1	[more]

BLAST of Cucsa.069210 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G16720.1	1.5e-44	54.10	TOXICOS EN LEVADURA 2	[more]
AT3G62690.1	1.5e-31	41.05	AtL5	[more]
AT2G47560.1	3.2e-31	47.22	RING/U-box superfamily protein	[more]
AT4G15975.1	2.1e-30	37.88	RING/U-box superfamily protein	[more]
AT1G53820.1	1.5e-23	38.78	RING/U-box superfamily protein	[more]

BLAST of Cucsa.069210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465577\|ref\|XP_004150504.1\|	1.3e-127	100.00	PREDICTED: RING-H2 finger protein ATL2-like [Cucumis sativus]	[more]
gi\|659117077\|ref\|XP_008458410.1\|	3.8e-106	87.22	PREDICTED: RING-H2 finger protein ATL2-like [Cucumis melo]	[more]
gi\|255551823\|ref\|XP_002516957.1\|	9.5e-49	59.76	PREDICTED: RING-H2 finger protein ATL2 [Ricinus communis]	[more]
gi\|470121627\|ref\|XP_004296864.1\|	4.7e-48	57.99	PREDICTED: RING-H2 finger protein ATL2 [Fragaria vesca subsp. vesca]	[more]
gi\|802701768\|ref\|XP_012083978.1\|	2.3e-47	60.23	PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0098542	defense response to other organism
biological_process	GO:0045087	innate immune response
biological_process	GO:0007165	signal transduction
biological_process	GO:0044710	single-organism metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.069210.1	Cucsa.069210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 111..154 score: 7.9
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 112..153 score: 6.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 112..154 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 111..157 score: 1.6
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 17..176 score: 1.8
None	No IPR available	PANTHER	PTHR14155:SF117	E3 UBIQUITIN-PROTEIN LIGASE ATL41-RELATED	coord: 17..176 score: 1.8
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 92..160 score: 2.72

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.069210	Cla021758	Watermelon (97103) v1	cgywmB068
Cucsa.069210	Cla009289	Watermelon (97103) v1	cgywmB069
Cucsa.069210	Csa3G164500	Cucumber (Chinese Long) v2	cgycuB063
Cucsa.069210	Csa6G318710	Cucumber (Chinese Long) v2	cgycuB064
Cucsa.069210	MELO3C021312	Melon (DHL92) v3.5.1	cgymeB069
Cucsa.069210	MELO3C006682	Melon (DHL92) v3.5.1	cgymeB070
Cucsa.069210	ClCG06G004970	Watermelon (Charleston Gray)	cgywcgB069
Cucsa.069210	CSPI03G14620	Wild cucumber (PI 183967)	cgycpiB064
Cucsa.069210	CSPI06G17490	Wild cucumber (PI 183967)	cgycpiB065
Cucsa.069210	CmaCh17G003400	Cucurbita maxima (Rimu)	cgycmaB0111
Cucsa.069210	CmoCh14G016490	Cucurbita moschata (Rifu)	cgycmoB0105
Cucsa.069210	Lsi05G015570	Bottle gourd (USVL1VR-Ls)	cgylsiB069
Cucsa.069210	Lsi09G014490	Bottle gourd (USVL1VR-Ls)	cgylsiB068
Cucsa.069210	Cp4.1LG12g02840	Cucurbita pepo (Zucchini)	cgycpeB0107
Cucsa.069210	Cp4.1LG17g00640	Cucurbita pepo (Zucchini)	cgycpeB0108
Cucsa.069210	MELO3C006682.2	Melon (DHL92) v3.6.1	cgymedB069
Cucsa.069210	MELO3C021312.2	Melon (DHL92) v3.6.1	cgymedB068
Cucsa.069210	CsaV3_3G014860	Cucumber (Chinese Long) v3	cgycucB066
Cucsa.069210	CsaV3_6G023850	Cucumber (Chinese Long) v3	cgycucB067
Cucsa.069210	Cla97C05G087800	Watermelon (97103) v2	cgywmbB066
Cucsa.069210	Cla97C06G114460	Watermelon (97103) v2	cgywmbB067
Cucsa.069210	Bhi01G000739	Wax gourd	cgywgoB074
Cucsa.069210	Bhi12G001805	Wax gourd	cgywgoB073
Cucsa.069210	Carg18855	Silver-seed gourd	carcgyB0785
Cucsa.069210	Carg19652	Silver-seed gourd	carcgyB0328
Cucsa.069210	Carg05518	Silver-seed gourd	carcgyB0074

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cucsa.069210	Cucsa.252890	Cucumber (Gy14) v1	cgycgyB020

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.069210	Cucurbita maxima (Rimu)	cgycmaB0112
Cucsa.069210	Cucurbita maxima (Rimu)	cgycmaB0113
Cucsa.069210	Cucurbita moschata (Rifu)	cgycmoB0106
Cucsa.069210	Cucurbita moschata (Rifu)	cgycmoB0107
Cucsa.069210	Watermelon (Charleston Gray)	cgywcgB068