Cp4.1LG17g00640 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g00640
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRing finger protein, putative
LocationCp4.1LG17 : 239505 .. 240095 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCGCCGCCGCGTCTGATGACGACGACGCCTTCTTCTCTCCGCCGTCAGACAAGCGCTACACTCTCAGCAGCGGAATTATACTCCGCGTAGTTATTGTACTGTTGTTCGTCGTTATTCTCATGATTTGTTTTCATCTCTACGTTCGATTGTACCTCTTCTCCCCCAGCCGCCGGCCATCTCGACCCCGCCGTCGCCCTCGTCCGCATTTTGTATTCACGGCTGAGCCACGTAGCGCCGCTCCGCCACGTGGTTTGCCGCAGTTGGTTATCAAATCCTTGCCTCTATTCGTTCACTCGGCGAAACCCGACTCGGATCCGATTTATTGCGCGGTTTGTTTATCTGAGTTCGAAGAGAACGAAACCGGGCGGGTTATCCCCACATGTAATCACAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTATTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTAAAATCCGAACCCGAATCTTCTACTAACCCGGTCGAGATAGTTGTGGAAGAACCCGATCGTGGTAACCCGGTTGAGGTGGACGACGTGTCGGAACACGGGCCTCGAGGGCAACGGAGAATTTAG

mRNA sequence

ATGGCCACCGCCGCCGCGTCTGATGACGACGACGCCTTCTTCTCTCCGCCGTCAGACAAGCGCTACACTCTCAGCAGCGGAATTATACTCCGCGTAGTTATTGTACTGTTGTTCGTCGTTATTCTCATGATTTGTTTTCATCTCTACGTTCGATTGTACCTCTTCTCCCCCAGCCGCCGGCCATCTCGACCCCGCCGTCGCCCTCGTCCGCATTTTGTATTCACGGCTGAGCCACGTAGCGCCGCTCCGCCACGTGGTTTGCCGCAGTTGGTTATCAAATCCTTGCCTCTATTCGTTCACTCGGCGAAACCCGACTCGGATCCGATTTATTGCGCGGTTTGTTTATCTGAGTTCGAAGAGAACGAAACCGGGCGGGTTATCCCCACATGTAATCACAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTATTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTAAAATCCGAACCCGAATCTTCTACTAACCCGGTCGAGATAGTTGTGGAAGAACCCGATCGTGGTAACCCGGTTGAGGTGGACGACGTGTCGGAACACGGGCCTCGAGGGCAACGGAGAATTTAG

Coding sequence (CDS)

ATGGCCACCGCCGCCGCGTCTGATGACGACGACGCCTTCTTCTCTCCGCCGTCAGACAAGCGCTACACTCTCAGCAGCGGAATTATACTCCGCGTAGTTATTGTACTGTTGTTCGTCGTTATTCTCATGATTTGTTTTCATCTCTACGTTCGATTGTACCTCTTCTCCCCCAGCCGCCGGCCATCTCGACCCCGCCGTCGCCCTCGTCCGCATTTTGTATTCACGGCTGAGCCACGTAGCGCCGCTCCGCCACGTGGTTTGCCGCAGTTGGTTATCAAATCCTTGCCTCTATTCGTTCACTCGGCGAAACCCGACTCGGATCCGATTTATTGCGCGGTTTGTTTATCTGAGTTCGAAGAGAACGAAACCGGGCGGGTTATCCCCACATGTAATCACAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTATTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTAAAATCCGAACCCGAATCTTCTACTAACCCGGTCGAGATAGTTGTGGAAGAACCCGATCGTGGTAACCCGGTTGAGGTGGACGACGTGTCGGAACACGGGCCTCGAGGGCAACGGAGAATTTAG

Protein sequence

MATAAASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPVEVDDVSEHGPRGQRRI
Homology
[Close]
BLAST of Cp4.1LG17g00640 vs. Swiss-Prot
Match: ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 2.3e-35
Identity = 89/181 (49.17%), Postives = 112/181 (61.88%), Query Frame = 1 

Query: 6   ASDDDDAFFSPPSD-----KRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 65
           ++D D   F P  +     K Y +S  I+L  +++L FVVILM+  HLY R YL    RR
Sbjct: 3   SNDQDPIPFRPEDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRR 62

Query: 66  PSRPRRRPRPHFV--FTAEPRSAAPP----RGLPQLVIKSLPLFVHSAKPDSDPIYCAVC 125
             R R R R   +  FTA+P +AA      RGL   VIKSLP+F  S +   DPI CAVC
Sbjct: 63  HLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVC 122

Query: 126 LSEFEENETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKS----EPESSTNPVEIV 172
           LSEFEE+ETGRV+P C H+FHV CIDMWF+SH TCPLCRS V+S    E  ++    E+V
Sbjct: 123 LSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVV 182

[Close]
BLAST of Cp4.1LG17g00640 vs. Swiss-Prot
Match: ATL17_ARATH (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 9.8e-26
Identity = 68/153 (44.44%), Postives = 93/153 (60.78%), Query Frame = 1 

Query: 29  ILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPRSAAPPRGLP 88
           +L   I++L +VILM+  HLY R YL   S     P  R      F  +P S   P GL 
Sbjct: 1   MLTTTILILLIVILMVSLHLYYRWYLLRSS-----PFNRTTAASTFFTDPSST--PGGLN 60

Query: 89  QLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGRVIPTCNHSFHVGCIDMWFYSHVT 148
             +IKSLP+F  SA      + C+VCLSEF++NE+GRV+P C H+FHV CIDMWF+SH +
Sbjct: 61  PSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSS 120

Query: 149 CPLCRSEVK---SEPESSTNPVEIVVEEPDRGN 179
           CPLCRS+++      +SS + V I + +P  G+
Sbjct: 121 CPLCRSQIEPFAGGVKSSMDEVAISISDPVYGD 146

[Close]
BLAST of Cp4.1LG17g00640 vs. Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-24
Identity = 74/172 (43.02%), Postives = 101/172 (58.72%), Query Frame = 1 

Query: 22  YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHF-VFTAEPRS 81
           Y L+  I+L  VIVL   VI+++CFH Y R +LF    R  R RRR R H    +A PR 
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYAR-WLFRRHNR--RIRRRIRSHLRTLSASPRD 81

Query: 82  AAPPRGLPQLVIKSLPLFVHSAK---PDSDPIYCAVCLSEFEENETGRVIPTCNHSFHVG 141
            A    L Q V+  +P+FV+S+K   P  +   C+VCLSEFEE + GR++P C HSFHV 
Sbjct: 82  QA----LDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVD 141

Query: 142 CIDMWFYSHVTCPLCRSEV-------KSEPESSTNPVEIVVEEPDRGNPVEV 183
           CID WF S  TCPLCR+ V       ++   SS++P+    E  +R  P+++
Sbjct: 142 CIDTWFRSRSTCPLCRAPVQPPFQVIETGSSSSSSPLTFPTEGCER-EPIDL 185

[Close]
BLAST of Cp4.1LG17g00640 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.4e-24
Identity = 73/182 (40.11%), Postives = 103/182 (56.59%), Query Frame = 1 

Query: 21  RYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPR- 80
           RY+L+  I+L  VI+L   VIL++CFH Y R +LF    R  R RRR   H    A  R 
Sbjct: 21  RYSLNGKIMLASVIILFVAVILILCFHSYAR-WLFRRQNR--RIRRRISAHLRSLAAARD 80

Query: 81  ---SAAPPRGLPQLVIKSLPLFVHSAKPDSDPIY-CAVCLSEFEENETGRVIPTCNHSFH 140
              S++    L   V++ +P+FV+S K    P+  C+VCLSEFEE++ GRV+P C H FH
Sbjct: 81  PTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFH 140

Query: 141 VGCIDMWFYSHVTCPLCRSEVK-SEPESSTNPVEIV------VEEPDRGNPVEVDDVSEH 191
           V CID WF S  +CPLCR+ V+ ++P +   PV  V      +E+ + G+    D+    
Sbjct: 141 VDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESESS 199

[Close]
BLAST of Cp4.1LG17g00640 vs. Swiss-Prot
Match: ATL3_ARATH (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.2e-19
Identity = 59/173 (34.10%), Postives = 85/173 (49.13%), Query Frame = 1 

Query: 24  LSSGIILRVVIVLLFVVILMICFHLYVRLYLF---------------------SPSRRPS 83
           ++S IIL  +IVL   V+ ++  HLY +LY +                       S  P 
Sbjct: 20  VTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPP 79

Query: 84  RPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENE 143
              RR R  F+F    + A    GL    + SLP+         D + C++CLSE  + +
Sbjct: 80  VVTRRQRRRFIFVPG-QDALSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGD 139

Query: 144 TGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPD 176
             R++P CNHSFHV CIDMWF SH TCP+CR+ V    ++S+  VE V +  +
Sbjct: 140 KARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDNAE 191

[Close]
BLAST of Cp4.1LG17g00640 vs. TrEMBL
Match: A0A0A0KF25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318710 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.5e-57
Identity = 133/210 (63.33%), Postives = 144/210 (68.57%), Query Frame = 1 

Query: 6   ASDDDDA-FFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSR- 65
           A DDDDA    PPS  RY LS  I+L  +I+LLFVVILMIC HLYVRL+L S + RPSR 
Sbjct: 2   ADDDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRI 61

Query: 66  PRRRPRPHFVFTAEPRSAA---PPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 125
            RRR R HFVFTAEPR AA   P RGLPQ ++KSLP+FVHS K D DPIYCAVCLSEFEE
Sbjct: 62  RRRRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEE 121

Query: 126 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESST----NPVEIVV----- 185
           NE GR IP CNHSFHVGCIDMWFYSH TCPLCRSEVK EPE  +    +P EI +     
Sbjct: 122 NEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCEL 181

Query: 186 ------EEPDRGNPVE-------VDDVSEH 189
                 EE D   PVE       VDD S H
Sbjct: 182 GSRSGEEETDHRCPVEMAASVEVVDDESRH 211

[Close]
BLAST of Cp4.1LG17g00640 vs. TrEMBL
Match: B9RT88_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_0682030 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-38
Identity = 87/162 (53.70%), Postives = 107/162 (66.05%), Query Frame = 1 

Query: 6   ASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPR 65
           AS D D  +S  + K Y LS  I+L  +I+L FVVI+M+C HLY R YL +  RR  R  
Sbjct: 4   ASPDADNEYS--TTKGYALSGKIMLSAIIILFFVVIMMVCLHLYARWYLLNARRRQHRRA 63

Query: 66  RRPRPHFVFTAEPRSA----APPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEEN 125
           R  R H +F  +P +A     P RGL   V+ +LP+F +S+K   DPI CAVCLSEFEEN
Sbjct: 64  RNRRAHLIFYVDPSNANNVTVPSRGLDAAVLNTLPVFAYSSKTHPDPIECAVCLSEFEEN 123

Query: 126 ETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESS 164
           E GR +P CNHSFH+ CIDMWF+SH TCPLCRS V+  PE S
Sbjct: 124 ERGRTLPKCNHSFHIECIDMWFHSHSTCPLCRSAVEPVPEDS 163

[Close]
BLAST of Cp4.1LG17g00640 vs. TrEMBL
Match: V4RFV8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005780mg PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.1e-38
Identity = 96/185 (51.89%), Postives = 119/185 (64.32%), Query Frame = 1 

Query: 8   DDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRR 67
           +D D   S   ++ Y LS  I+L  +++L FVVILM+C HLY R YL    RR  R  R 
Sbjct: 3   NDVDPRGSNSDNRGYALSGRIMLSSIVILFFVVILMVCLHLYARWYLVQARRRQVRRHRH 62

Query: 68  PRPHFVFTAEPR--SAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGR 127
            R  FVF  +P   SA   RGL   V+KSLP+FV+S+K  +D + CAVCLSEFEENE+GR
Sbjct: 63  RRTQFVFYVDPTNPSATSSRGLDSSVLKSLPVFVYSSKTHADAMDCAVCLSEFEENESGR 122

Query: 128 VIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPVEVDDV 187
           V+P CNHSFH+GCIDMWF+SH TCPLCR+ V+       +PV     +PD  NPV V  V
Sbjct: 123 VLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELVTAQPEDPV-----QPD--NPVPV-RV 179

Query: 188 SEHGP 191
           S H P
Sbjct: 183 SVHEP 179

[Close]
BLAST of Cp4.1LG17g00640 vs. TrEMBL
Match: G3CHK4_PONTR (Ring zinc finger transcription factor OS=Poncirus trifoliata PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.1e-38
Identity = 96/185 (51.89%), Postives = 119/185 (64.32%), Query Frame = 1 

Query: 8   DDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRR 67
           +D D   S   ++ Y LS  I+L  +++L FVVILM+C HLY R YL    RR  R  R 
Sbjct: 3   NDVDPRGSNSDNRGYALSGRIMLSSIVILFFVVILMVCLHLYARWYLVQARRRQVRRHRH 62

Query: 68  PRPHFVFTAEPR--SAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGR 127
            R  FVF  +P   SA   RGL   V+KSLP+FV+S+K  +D + CAVCLSEFEENE+GR
Sbjct: 63  RRTQFVFYVDPTNPSATSSRGLDSSVLKSLPVFVYSSKTHADAMDCAVCLSEFEENESGR 122

Query: 128 VIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPVEVDDV 187
           V+P CNHSFH+GCIDMWF+SH TCPLCR+ V+       +PV     +PD  NPV V  V
Sbjct: 123 VLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELVTAQPEDPV-----QPD--NPVPV-RV 179

Query: 188 SEHGP 191
           S H P
Sbjct: 183 SVHEP 179

[Close]
BLAST of Cp4.1LG17g00640 vs. TrEMBL
Match: A0A067JV40_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18911 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-36
Identity = 80/152 (52.63%), Postives = 100/152 (65.79%), Query Frame = 1 

Query: 18  SDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAE 77
           + + Y +S  I+L  +++L FVVILM+C HLY R YL +  RR  R  R  R H VF  +
Sbjct: 13  ASRSYAISGRIMLSAIVILFFVVILMVCLHLYARWYLLNARRRQIRRVRNRRTHLVFYVD 72

Query: 78  PRS------AAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGRVIPTCN 137
           P          P RGL   V+KSLP+F +S+K   D I CAVCLSEFEENE GR +P CN
Sbjct: 73  PSDPNAAHVTVPSRGLDPAVLKSLPVFDYSSKTHPDSIECAVCLSEFEENEKGRTLPKCN 132

Query: 138 HSFHVGCIDMWFYSHVTCPLCRSEVKSEPESS 164
           HSFH+ CIDMWF+SH TCPLCRS V+  PE++
Sbjct: 133 HSFHIECIDMWFHSHSTCPLCRSPVEPVPENA 164

[Close]
BLAST of Cp4.1LG17g00640 vs. TAIR10
Match: AT3G16720.1 (AT3G16720.1 TOXICOS EN LEVADURA 2)

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-36
Identity = 89/181 (49.17%), Postives = 112/181 (61.88%), Query Frame = 1 

Query: 6   ASDDDDAFFSPPSD-----KRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 65
           ++D D   F P  +     K Y +S  I+L  +++L FVVILM+  HLY R YL    RR
Sbjct: 3   SNDQDPIPFRPEDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRR 62

Query: 66  PSRPRRRPRPHFV--FTAEPRSAAPP----RGLPQLVIKSLPLFVHSAKPDSDPIYCAVC 125
             R R R R   +  FTA+P +AA      RGL   VIKSLP+F  S +   DPI CAVC
Sbjct: 63  HLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVC 122

Query: 126 LSEFEENETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKS----EPESSTNPVEIV 172
           LSEFEE+ETGRV+P C H+FHV CIDMWF+SH TCPLCRS V+S    E  ++    E+V
Sbjct: 123 LSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVV 182

[Close]
BLAST of Cp4.1LG17g00640 vs. TAIR10
Match: AT4G15975.1 (AT4G15975.1 RING/U-box superfamily protein)

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-26
Identity = 67/153 (43.79%), Postives = 92/153 (60.13%), Query Frame = 1 

Query: 29  ILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPRSAAPPRGLP 88
           +L   I++L +VILM+  HLY R YL   S     P  R      F  +P S   P GL 
Sbjct: 1   MLTTTILILLIVILMVSLHLYYRWYLLRSS-----PFNRTTAASTFFTDPSST--PGGLN 60

Query: 89  QLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGRVIPTCNHSFHVGCIDMWFYSHVT 148
             +IKSLP+F  SA      + C+VCLSEF++NE+GRV+P C H+FHV CIDMWF+SH +
Sbjct: 61  PSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVDCIDMWFHSHSS 120

Query: 149 CPLCRSEVK---SEPESSTNPVEIVVEEPDRGN 179
           CPLCRS ++      +S+ + V I + +P  G+
Sbjct: 121 CPLCRSLIEPFAGGVKSTMDEVAISISDPVYGD 146

[Close]
BLAST of Cp4.1LG17g00640 vs. TAIR10
Match: AT2G47560.1 (AT2G47560.1 RING/U-box superfamily protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-25
Identity = 74/172 (43.02%), Postives = 101/172 (58.72%), Query Frame = 1 

Query: 22  YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHF-VFTAEPRS 81
           Y L+  I+L  VIVL   VI+++CFH Y R +LF    R  R RRR R H    +A PR 
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYAR-WLFRRHNR--RIRRRIRSHLRTLSASPRD 81

Query: 82  AAPPRGLPQLVIKSLPLFVHSAK---PDSDPIYCAVCLSEFEENETGRVIPTCNHSFHVG 141
            A    L Q V+  +P+FV+S+K   P  +   C+VCLSEFEE + GR++P C HSFHV 
Sbjct: 82  QA----LDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVD 141

Query: 142 CIDMWFYSHVTCPLCRSEV-------KSEPESSTNPVEIVVEEPDRGNPVEV 183
           CID WF S  TCPLCR+ V       ++   SS++P+    E  +R  P+++
Sbjct: 142 CIDTWFRSRSTCPLCRAPVQPPFQVIETGSSSSSSPLTFPTEGCER-EPIDL 185

[Close]
BLAST of Cp4.1LG17g00640 vs. TAIR10
Match: AT3G62690.1 (AT3G62690.1 AtL5)

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-25
Identity = 73/182 (40.11%), Postives = 103/182 (56.59%), Query Frame = 1 

Query: 21  RYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPR- 80
           RY+L+  I+L  VI+L   VIL++CFH Y R +LF    R  R RRR   H    A  R 
Sbjct: 21  RYSLNGKIMLASVIILFVAVILILCFHSYAR-WLFRRQNR--RIRRRISAHLRSLAAARD 80

Query: 81  ---SAAPPRGLPQLVIKSLPLFVHSAKPDSDPIY-CAVCLSEFEENETGRVIPTCNHSFH 140
              S++    L   V++ +P+FV+S K    P+  C+VCLSEFEE++ GRV+P C H FH
Sbjct: 81  PTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFH 140

Query: 141 VGCIDMWFYSHVTCPLCRSEVK-SEPESSTNPVEIV------VEEPDRGNPVEVDDVSEH 191
           V CID WF S  +CPLCR+ V+ ++P +   PV  V      +E+ + G+    D+    
Sbjct: 141 VDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESESS 199

[Close]
BLAST of Cp4.1LG17g00640 vs. TAIR10
Match: AT1G72310.1 (AT1G72310.1 RING/U-box superfamily protein)

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-20
Identity = 59/173 (34.10%), Postives = 85/173 (49.13%), Query Frame = 1 

Query: 24  LSSGIILRVVIVLLFVVILMICFHLYVRLYLF---------------------SPSRRPS 83
           ++S IIL  +IVL   V+ ++  HLY +LY +                       S  P 
Sbjct: 20  VTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPP 79

Query: 84  RPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENE 143
              RR R  F+F    + A    GL    + SLP+         D + C++CLSE  + +
Sbjct: 80  VVTRRQRRRFIFVPG-QDALSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGD 139

Query: 144 TGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPD 176
             R++P CNHSFHV CIDMWF SH TCP+CR+ V    ++S+  VE V +  +
Sbjct: 140 KARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDNAE 191

[Close]
BLAST of Cp4.1LG17g00640 vs. NCBI nr
Match: gi|659117077|ref|XP_008458410.1| (PREDICTED: RING-H2 finger protein ATL2-like [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 6.3e-57
Identity = 133/210 (63.33%), Postives = 144/210 (68.57%), Query Frame = 1 

Query: 5   AASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPS-RRPSR 64
           A  DDD   FSPPS +RY LS  I+L  +I+LLFVVILMIC HLYVRL+L S S  RPSR
Sbjct: 2   ADDDDDGTLFSPPSYRRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSSTHRPSR 61

Query: 65  PR---RRPRPHFVFTAEPRSAA---PPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSE 124
            R   RR R HFVFTAEPR AA   P RGLPQ ++KSLP+FVH AK D DPIYCAVCLSE
Sbjct: 62  SRIRRRRRREHFVFTAEPRIAAAGAPSRGLPQSILKSLPVFVHLAKTDPDPIYCAVCLSE 121

Query: 125 FEENETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPV-EIVV----- 184
           FEENE GR IP CNH FHVGCIDMWFYSHVTCPLCRSEVK EP   + P  EI +     
Sbjct: 122 FEENEIGRSIPKCNHRFHVGCIDMWFYSHVTCPLCRSEVKPEPGCGSGPCGEIAIDVSEV 181

Query: 185 ------EEPDRGNPVE-------VDDVSEH 189
                 EE D G PVE       V+D S H
Sbjct: 182 GSRSGEEERDGGCPVEMAASVEVVEDESRH 211

[Close]
BLAST of Cp4.1LG17g00640 vs. NCBI nr
Match: gi|449465577|ref|XP_004150504.1| (PREDICTED: RING-H2 finger protein ATL2-like [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-56
Identity = 133/210 (63.33%), Postives = 144/210 (68.57%), Query Frame = 1 

Query: 6   ASDDDDA-FFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSR- 65
           A DDDDA    PPS  RY LS  I+L  +I+LLFVVILMIC HLYVRL+L S + RPSR 
Sbjct: 2   ADDDDDASLLYPPSYTRYALSGKIMLGAIILLLFVVILMICLHLYVRLFLLSSTPRPSRI 61

Query: 66  PRRRPRPHFVFTAEPRSAA---PPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 125
            RRR R HFVFTAEPR AA   P RGLPQ ++KSLP+FVHS K D DPIYCAVCLSEFEE
Sbjct: 62  RRRRRRQHFVFTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEE 121

Query: 126 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESST----NPVEIVV----- 185
           NE GR IP CNHSFHVGCIDMWFYSH TCPLCRSEVK EPE  +    +P EI +     
Sbjct: 122 NEIGRSIPKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCEL 181

Query: 186 ------EEPDRGNPVE-------VDDVSEH 189
                 EE D   PVE       VDD S H
Sbjct: 182 GSRSGEEETDHRCPVEMAASVEVVDDESRH 211

[Close]
BLAST of Cp4.1LG17g00640 vs. NCBI nr
Match: gi|255551823|ref|XP_002516957.1| (PREDICTED: RING-H2 finger protein ATL2 [Ricinus communis])

HSP 1 Score: 167.9 bits (424), Expect = 1.7e-38
Identity = 87/162 (53.70%), Postives = 107/162 (66.05%), Query Frame = 1 

Query: 6   ASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPR 65
           AS D D  +S  + K Y LS  I+L  +I+L FVVI+M+C HLY R YL +  RR  R  
Sbjct: 4   ASPDADNEYS--TTKGYALSGKIMLSAIIILFFVVIMMVCLHLYARWYLLNARRRQHRRA 63

Query: 66  RRPRPHFVFTAEPRSA----APPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEEN 125
           R  R H +F  +P +A     P RGL   V+ +LP+F +S+K   DPI CAVCLSEFEEN
Sbjct: 64  RNRRAHLIFYVDPSNANNVTVPSRGLDAAVLNTLPVFAYSSKTHPDPIECAVCLSEFEEN 123

Query: 126 ETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESS 164
           E GR +P CNHSFH+ CIDMWF+SH TCPLCRS V+  PE S
Sbjct: 124 ERGRTLPKCNHSFHIECIDMWFHSHSTCPLCRSAVEPVPEDS 163

[Close]
BLAST of Cp4.1LG17g00640 vs. NCBI nr
Match: gi|567852699|ref|XP_006419513.1| (hypothetical protein CICLE_v10005780mg [Citrus clementina])

HSP 1 Score: 167.2 bits (422), Expect = 2.9e-38
Identity = 96/185 (51.89%), Postives = 119/185 (64.32%), Query Frame = 1 

Query: 8   DDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRR 67
           +D D   S   ++ Y LS  I+L  +++L FVVILM+C HLY R YL    RR  R  R 
Sbjct: 3   NDVDPRGSNSDNRGYALSGRIMLSSIVILFFVVILMVCLHLYARWYLVQARRRQVRRHRH 62

Query: 68  PRPHFVFTAEPR--SAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGR 127
            R  FVF  +P   SA   RGL   V+KSLP+FV+S+K  +D + CAVCLSEFEENE+GR
Sbjct: 63  RRTQFVFYVDPTNPSATSSRGLDSSVLKSLPVFVYSSKTHADAMDCAVCLSEFEENESGR 122

Query: 128 VIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPVEVDDV 187
           V+P CNHSFH+GCIDMWF+SH TCPLCR+ V+       +PV     +PD  NPV V  V
Sbjct: 123 VLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELVTAQPEDPV-----QPD--NPVPV-RV 179

Query: 188 SEHGP 191
           S H P
Sbjct: 183 SVHEP 179

[Close]
BLAST of Cp4.1LG17g00640 vs. NCBI nr
Match: gi|337733634|gb|AEI72266.1| (ring zinc finger transcription factor [Citrus trifoliata])

HSP 1 Score: 167.2 bits (422), Expect = 2.9e-38
Identity = 96/185 (51.89%), Postives = 119/185 (64.32%), Query Frame = 1 

Query: 8   DDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRR 67
           +D D   S   ++ Y LS  I+L  +++L FVVILM+C HLY R YL    RR  R  R 
Sbjct: 3   NDVDPRGSNSDNRGYALSGRIMLSSIVILFFVVILMVCLHLYARWYLVQARRRQVRRHRH 62

Query: 68  PRPHFVFTAEPR--SAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGR 127
            R  FVF  +P   SA   RGL   V+KSLP+FV+S+K  +D + CAVCLSEFEENE+GR
Sbjct: 63  RRTQFVFYVDPTNPSATSSRGLDSSVLKSLPVFVYSSKTHADAMDCAVCLSEFEENESGR 122

Query: 128 VIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPVEVDDV 187
           V+P CNHSFH+GCIDMWF+SH TCPLCR+ V+       +PV     +PD  NPV V  V
Sbjct: 123 VLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELVTAQPEDPV-----QPD--NPVPV-RV 179

Query: 188 SEHGP 191
           S H P
Sbjct: 183 SVHEP 179

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g00640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL2_ARATH2.3e-3549.17RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2[more]
ATL17_ARATH9.8e-2644.44RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2 SV=2[more]
ATL64_ARATH1.9e-2443.02RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1[more]
ATL5_ARATH5.4e-2440.11RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1[more]
ATL3_ARATH5.2e-1934.10RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2 SV=1[more]
BLAST of Cp4.1LG17g00640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF25_CUCSA7.5e-5763.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318710 PE=4 SV=1[more]
B9RT88_RICCO1.2e-3853.70Ring finger protein, putative OS=Ricinus communis GN=RCOM_0682030 PE=4 SV=1[more]
V4RFV8_9ROSI2.1e-3851.89Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005780mg PE=4 SV=1[more]
G3CHK4_PONTR2.1e-3851.89Ring zinc finger transcription factor OS=Poncirus trifoliata PE=2 SV=1[more]
A0A067JV40_JATCU1.9e-3652.63Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18911 PE=4 SV=1[more]
BLAST of Cp4.1LG17g00640 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G16720.11.3e-3649.17 TOXICOS EN LEVADURA 2[more]
AT4G15975.13.6e-2643.79 RING/U-box superfamily protein[more]
AT2G47560.11.0e-2543.02 RING/U-box superfamily protein[more]
AT3G62690.13.0e-2540.11 AtL5[more]
AT1G72310.12.9e-2034.10 RING/U-box superfamily protein[more]
BLAST of Cp4.1LG17g00640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659117077|ref|XP_008458410.1|6.3e-5763.33PREDICTED: RING-H2 finger protein ATL2-like [Cucumis melo][more]
gi|449465577|ref|XP_004150504.1|1.1e-5663.33PREDICTED: RING-H2 finger protein ATL2-like [Cucumis sativus][more]
gi|255551823|ref|XP_002516957.1|1.7e-3853.70PREDICTED: RING-H2 finger protein ATL2 [Ricinus communis][more]
gi|567852699|ref|XP_006419513.1|2.9e-3851.89hypothetical protein CICLE_v10005780mg [Citrus clementina][more]
gi|337733634|gb|AEI72266.1|2.9e-3851.89ring zinc finger transcription factor [Citrus trifoliata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0071229 cellular response to acid chemical
biological_process GO:0031347 regulation of defense response
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0035556 intracellular signal transduction
biological_process GO:0009814 defense response, incompatible interaction
biological_process GO:1901701 cellular response to oxygen-containing compound
biological_process GO:0071310 cellular response to organic substance
biological_process GO:0008152 metabolic process
biological_process GO:0002376 immune system process
biological_process GO:0044710 single-organism metabolic process
biological_process GO:0007165 signal transduction
biological_process GO:0045087 innate immune response
biological_process GO:0098542 defense response to other organism
biological_process GO:0044237 cellular metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g00640.1Cp4.1LG17g00640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 110..153
score: 8.5
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 111..152
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 111..153
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 109..156
score: 3.2
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 21..175
score: 2.6
NoneNo IPR availablePANTHERPTHR14155:SF117E3 UBIQUITIN-PROTEIN LIGASE ATL41-RELATEDcoord: 21..175
score: 2.6
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 91..159
score: 3.28

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g00640Cucsa.069210Cucumber (Gy14) v1cgycpeB0108
Cp4.1LG17g00640Cucsa.252890Cucumber (Gy14) v1cgycpeB0678
Cp4.1LG17g00640CmaCh17G003400Cucurbita maxima (Rimu)cmacpeB377
Cp4.1LG17g00640CmoCh14G016490Cucurbita moschata (Rifu)cmocpeB233
Cp4.1LG17g00640Cla021758Watermelon (97103) v1cpewmB329
Cp4.1LG17g00640Cla009289Watermelon (97103) v1cpewmB340
Cp4.1LG17g00640Csa3G164500Cucumber (Chinese Long) v2cpecuB307
Cp4.1LG17g00640Csa6G318710Cucumber (Chinese Long) v2cpecuB324
Cp4.1LG17g00640MELO3C021312Melon (DHL92) v3.5.1cpemeB283
Cp4.1LG17g00640MELO3C006682Melon (DHL92) v3.5.1cpemeB314
Cp4.1LG17g00640ClCG06G004970Watermelon (Charleston Gray)cpewcgB297
Cp4.1LG17g00640CSPI06G17490Wild cucumber (PI 183967)cpecpiB325
Cp4.1LG17g00640CSPI03G14620Wild cucumber (PI 183967)cpecpiB307
Cp4.1LG17g00640Lsi09G014490Bottle gourd (USVL1VR-Ls)cpelsiB247
Cp4.1LG17g00640Lsi05G015570Bottle gourd (USVL1VR-Ls)cpelsiB268
Cp4.1LG17g00640MELO3C006682.2Melon (DHL92) v3.6.1cpemedB368
Cp4.1LG17g00640MELO3C021312.2Melon (DHL92) v3.6.1cpemedB331
Cp4.1LG17g00640CsaV3_3G014860Cucumber (Chinese Long) v3cpecucB0379
Cp4.1LG17g00640CsaV3_6G023850Cucumber (Chinese Long) v3cpecucB0404
Cp4.1LG17g00640Bhi01G000739Wax gourdcpewgoB0398
Cp4.1LG17g00640Bhi12G001805Wax gourdcpewgoB0390
Cp4.1LG17g00640CsGy6G016920Cucumber (Gy14) v2cgybcpeB784
Cp4.1LG17g00640CsGy3G014770Cucumber (Gy14) v2cgybcpeB348
Cp4.1LG17g00640Carg18855Silver-seed gourdcarcpeB0985
Cp4.1LG17g00640Carg05518Silver-seed gourdcarcpeB0102
Cp4.1LG17g00640Carg19652Silver-seed gourdcarcpeB0394
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g00640Cp4.1LG12g02840Cucurbita pepo (Zucchini)cpecpeB158
Cp4.1LG17g00640Cp4.1LG03g11560Cucurbita pepo (Zucchini)cpecpeB337
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g00640Cucurbita pepo (Zucchini)cpecpeB343
Cp4.1LG17g00640Cucurbita maxima (Rimu)cmacpeB270
Cp4.1LG17g00640Cucurbita maxima (Rimu)cmacpeB915
Cp4.1LG17g00640Cucurbita moschata (Rifu)cmocpeB340
Cp4.1LG17g00640Cucurbita moschata (Rifu)cmocpeB852
Cp4.1LG17g00640Watermelon (Charleston Gray)cpewcgB291
Cp4.1LG17g00640Cucumber (Gy14) v2cgybcpeB202
Cp4.1LG17g00640Cucumber (Chinese Long) v3cpecucB0376