Carg05518 (gene) Silver-seed gourd

Overview
NameCarg05518
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING-H2 finger protein ATL2-like
LocationCucurbita_argyrosperma_scaffold_046 : 893277 .. 894032 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGAGGACGACGATGACGGCGGCGGACTCTTCTCTCCGTCGTCCTTCAAAAGCTACGCTCTCAGCGGCAAAATTATGCTCGGCGCAGTCATTGTGTTGTTATTTGTCGTTATCCTCATGATTTGTCTTCATCTCTATGTTCGATTGTATCTCCTGTCATCCAGCCGCCGACAATCCCGTAGTCACCGTCGCCGTCGCCGCCGTGTGCAATTTGAATTCCCAATGGAGCCTCGAATTGCCGCCGCTTCATCGCGTGGTTTGCCGCAGTCGATTCTCAAATCCCTACCCGTTTTCGTTCACTCGATGAAACCCGACCCGGATCCGGTTTATTGTGCGGTTTGTTTATCGGAGTTTGAAGAGAACGAAATCGGGCGGACTATTCCCAAATGTAACCATAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTACTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTCAAACCCGAACCTGGATCCGAATCCGGCCCATCTAATGACCCGGTGGAGCTAGTTCTTGATGTTTGCGAACCGGGTTCGAGATCTAGCGAGGATGAACCGGTTCGTGAGTGTCCGGTTGAGATGGCGGCATCGGTGGAGATGGTGGATGACGAATCGAGGCCAGTAGCCGGCATGTCGGAGACAACGACGAGTTTTGTGAAATCGTTGTCTTTGAAAAGGATTCTAAGTAGAGATGCAACGAAACGAGATCTGGAGAAGGAGGAATCGGCGGTCGTTCGTTGA

mRNA sequence

ATGGCCGCCGAGGACGACGATGACGGCGGCGGACTCTTCTCTCCGTCGTCCTTCAAAAGCTACGCTCTCAGCGGCAAAATTATGCTCGGCGCAGTCATTGTGTTGTTATTTGTCGTTATCCTCATGATTTGTCTTCATCTCTATGTTCGATTGTATCTCCTGTCATCCAGCCGCCGACAATCCCGTAGTCACCGTCGCCGTCGCCGCCGTGTGCAATTTGAATTCCCAATGGAGCCTCGAATTGCCGCCGCTTCATCGCGTGGTTTGCCGCAGTCGATTCTCAAATCCCTACCCGTTTTCGTTCACTCGATGAAACCCGACCCGGATCCGGTTTATTGTGCGGTTTGTTTATCGGAGTTTGAAGAGAACGAAATCGGGCGGACTATTCCCAAATGTAACCATAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTACTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTCAAACCCGAACCTGGATCCGAATCCGGCCCATCTAATGACCCGGTGGAGCTAGTTCTTGATGTTTGCGAACCGGGTTCGAGATCTAGCGAGGATGAACCGGTTCGTGAGTGTCCGGTTGAGATGGCGGCATCGGTGGAGATGGTGGATGACGAATCGAGGCCAGTAGCCGGCATGTCGGAGACAACGACGAGTTTTGTGAAATCGTTGTCTTTGAAAAGGATTCTAAGTAGAGATGCAACGAAACGAGATCTGGAGAAGGAGGAATCGGCGGTCGTTCGTTGA

Coding sequence (CDS)

ATGGCCGCCGAGGACGACGATGACGGCGGCGGACTCTTCTCTCCGTCGTCCTTCAAAAGCTACGCTCTCAGCGGCAAAATTATGCTCGGCGCAGTCATTGTGTTGTTATTTGTCGTTATCCTCATGATTTGTCTTCATCTCTATGTTCGATTGTATCTCCTGTCATCCAGCCGCCGACAATCCCGTAGTCACCGTCGCCGTCGCCGCCGTGTGCAATTTGAATTCCCAATGGAGCCTCGAATTGCCGCCGCTTCATCGCGTGGTTTGCCGCAGTCGATTCTCAAATCCCTACCCGTTTTCGTTCACTCGATGAAACCCGACCCGGATCCGGTTTATTGTGCGGTTTGTTTATCGGAGTTTGAAGAGAACGAAATCGGGCGGACTATTCCCAAATGTAACCATAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTACTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTCAAACCCGAACCTGGATCCGAATCCGGCCCATCTAATGACCCGGTGGAGCTAGTTCTTGATGTTTGCGAACCGGGTTCGAGATCTAGCGAGGATGAACCGGTTCGTGAGTGTCCGGTTGAGATGGCGGCATCGGTGGAGATGGTGGATGACGAATCGAGGCCAGTAGCCGGCATGTCGGAGACAACGACGAGTTTTGTGAAATCGTTGTCTTTGAAAAGGATTCTAAGTAGAGATGCAACGAAACGAGATCTGGAGAAGGAGGAATCGGCGGTCGTTCGTTGA

Protein sequence

MAAEDDDDGGGLFSPSSFKSYALSGKIMLGAVIVLLFVVILMICLHLYVRLYLLSSSRRQSRSHRRRRRRVQFEFPMEPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEENEIGRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDVCEPGSRSSEDEPVRECPVEMAASVEMVDDESRPVAGMSETTTSFVKSLSLKRILSRDATKRDLEKEESAVVR
Homology
[Close]
BLAST of Carg05518 vs. NCBI nr
Match: XP_022958821.1 (RING-H2 finger protein ATL2-like [Cucurbita moschata])

HSP 1 Score: 372.9 bits (956), Expect = 8.8e-100
Identity = 244/251 (97.21%), Postives = 245/251 (97.61%), Query Frame = 0 

Query: 1   MAAEXXXXXXXLFSPSSFKSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAAEXXXXXXXLFSPSSFKSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAAEXXXXXXXLFSPSSFKSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXEFPMEPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEF 120
           XXXXXXXXXXXXXEF  EPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEF
Sbjct: 61  XXXXXXXXXXXXXEFTTEPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEF 120

Query: 121 EENEIGRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDVC 180
           EENEIGRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDVC
Sbjct: 121 EENEIGRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDVC 180

Query: 181 EPGSRSSEDEPVRECPVEMAASVEMVDDESRPVAGMSETTTSFVKSLSLKRILSRDATKR 240
           EPGSRSSEDEPVREC VEMAASVE+VDDESRP A MSETTTSFVKSLSLKRILSRDATKR
Sbjct: 181 EPGSRSSEDEPVRECLVEMAASVELVDDESRPAADMSETTTSFVKSLSLKRILSRDATKR 240

Query: 241 DLEKEESAVVR 252
           DLEKEESA VR
Sbjct: 241 DLEKEESAAVR 251

[Close]
BLAST of Carg05518 vs. NCBI nr
Match: XP_023548720.1 (RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358.6 bits (919), Expect = 1.7e-95
Identity = 239/252 (94.84%), Postives = 243/252 (96.43%), Query Frame = 0 

Query: 1   MAAEXXXXXXXLFSPSSFKSYALSGKIMLGAV-XXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAAEXXXXXXXLFSPSSFKSYALSGKIMLGAV XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAAEXXXXXXXLFSPSSFKSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXEFPMEPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSE 120
           XXXXXXXXXXXXXX F  EPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSE
Sbjct: 61  XXXXXXXXXXXXXXXFTTEPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSE 120

Query: 121 FEENEIGRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDV 180
           FEE+EIGRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKP PGSESGPSNDPVE+VLDV
Sbjct: 121 FEESEIGRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPVPGSESGPSNDPVEIVLDV 180

Query: 181 CEPGSRSSEDEPVRECPVEMAASVEMVDDESRPVAGMSETTTSFVKSLSLKRILSRDATK 240
           CEPGSRSSEDEPVRECPVEMAASVE+VD E RPVA MSETTTSFVKSLSLKRILSRDAT+
Sbjct: 181 CEPGSRSSEDEPVRECPVEMAASVELVDVELRPVADMSETTTSFVKSLSLKRILSRDATE 240

Query: 241 RDLEKEESAVVR 252
           RDLEKEESA VR
Sbjct: 241 RDLEKEESAAVR 252

[Close]
BLAST of Carg05518 vs. NCBI nr
Match: XP_023006465.1 (RING-H2 finger protein ATL2-like [Cucurbita maxima])

HSP 1 Score: 354.4 bits (908), Expect = 3.2e-94
Identity = 223/240 (92.92%), Postives = 229/240 (95.42%), Query Frame = 0 

Query: 12  LFSPSSFKSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 71
           LFSPSSFKSYALSGKIMLG V XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 11  LFSPSSFKSYALSGKIMLGTVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 70

Query: 72  XXEFPMEPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEENEIGRTIPK 131
           XX F  EPRIAAASSRGLP SILK+LPVFVHSMKPDPDPVYCAVCLSEFEENEIGRTIPK
Sbjct: 71  XXXFTTEPRIAAASSRGLPHSILKTLPVFVHSMKPDPDPVYCAVCLSEFEENEIGRTIPK 130

Query: 132 CNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDVCEPGSRSSEDEP 191
           CNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPS+DPVE+VLDVCEPGSRSSEDEP
Sbjct: 131 CNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSDDPVEIVLDVCEPGSRSSEDEP 190

Query: 192 VRECPVEMAASVEMVDDESRPVAGMSETTTSFVKSLSLKRILSRDATKRDLEKEESAVVR 251
            RECPVEMAASVE+VDD SRPVA  SETTTSF+KSLSLKRILSRDAT+RDLEKEESA VR
Sbjct: 191 DRECPVEMAASVELVDDASRPVADTSETTTSFMKSLSLKRILSRDATERDLEKEESAAVR 250

[Close]
BLAST of Carg05518 vs. NCBI nr
Match: XP_004150504.1 (PREDICTED: RING-H2 finger protein ATL2-like [Cucumis sativus] >KGN47424.1 hypothetical protein Csa_6G318710 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 6.0e-64
Identity = 177/236 (75.00%), Postives = 192/236 (81.36%), Query Frame = 0 

Query: 12  LFSPSSFKSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 71
           L  P S+  YALSGKIMLGA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 10  LLYPPSYTRYALSGKIMLGAIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 69

Query: 72  XXEFPMEPRIAAAS--SRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEENEIGRTI 131
              F  EPRIAAA   SRGLPQSILKSLPVFVHS K DPDP+YCAVCLSEFEENEIGR+I
Sbjct: 70  FV-FTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSI 129

Query: 132 PKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDVCEPGSRSSED 191
           PKCNHSFHVGCIDMWFYSH TCPLCRSEVKPEP  ESGP +DP E+ +DVCE GSRS E+
Sbjct: 130 PKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCELGSRSGEE 189

Query: 192 EPVRECPVEMAASVEMVDDESRPVAGMSE-----TTTSFVKSLSLKRILSRDATKR 241
           E    CPVEMAASVE+VDDESR V  MS+      T +FVKSLS+K  +    ++R
Sbjct: 190 ETDHRCPVEMAASVEVVDDESRHVNDMSDDGTSRATVNFVKSLSVKEEIEAVGSER 244

[Close]
BLAST of Carg05518 vs. NCBI nr
Match: XP_008458410.1 (PREDICTED: RING-H2 finger protein ATL2-like [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 4.0e-60
Identity = 176/238 (73.95%), Postives = 192/238 (80.67%), Query Frame = 0 

Query: 12  LFSPSSFKSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 71
           LFSP S++ YALSGKIMLGA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 10  LFSPPSYRRYALSGKIMLGAIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 69

Query: 72  XXE--FPMEPRIAAAS--SRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEENEIGR 131
           XX   F  EPRIAAA   SRGLPQSILKSLPVFVH  K DPDP+YCAVCLSEFEENEIGR
Sbjct: 70  XXXXVFTAEPRIAAAGAPSRGLPQSILKSLPVFVHLAKTDPDPIYCAVCLSEFEENEIGR 129

Query: 132 TIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDVCEPGSRSS 191
           +IPKCNH FHVGCIDMWFYSHVTCPLCRSEVKPEPG  SGP     E+ +DV E GSRS 
Sbjct: 130 SIPKCNHRFHVGCIDMWFYSHVTCPLCRSEVKPEPGCGSGPCG---EIAIDVSEVGSRSG 189

Query: 192 EDEPVRECPVEMAASVEMVDDESRPVAGMSE-----TTTSFVKSLSLKRILSRDATKR 241
           E+E    CPVEMAASVE+V+DESR V  MS+      T +FVKSLS+K  +    ++R
Sbjct: 190 EEERDGGCPVEMAASVEVVEDESRHVNDMSDDGTSRATVNFVKSLSVKEEIEAAGSER 244

[Close]
BLAST of Carg05518 vs. TAIR10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-29
Identity = 116/187 (62.03%), Postives = 133/187 (71.12%), Query Frame = 0 

Query: 16  SSFKSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEF 75
           S  K+YA+SGKIML A+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   F
Sbjct: 19  SGSKTYAMSGKIMLSAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVFF 78

Query: 76  PMEPRIAAAS---SRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEENEIGRTIPKC 135
             +P  AA S   SRGL  +++KSLPVF  S +   DP+ CAVCLSEFEE+E GR +P C
Sbjct: 79  TADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNC 138

Query: 136 NHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLD-------VCEPGSR 192
            H+FHV CIDMWF+SH TCPLCRS V+   G ES  +    E+V+        V EP S 
Sbjct: 139 QHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPVLVIEPSSS 198

[Close]
BLAST of Carg05518 vs. TAIR10
Match: AT4G15975.1 (RING/U-box superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 4.0e-22
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 0 

Query: 88  GLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEENEIGRTIPKCNHSFHVGCIDMWFYS 147
           GL  SI+KSLP+F  S       + C+VCLSEF++NE GR +P C H+FHV CIDMWF+S
Sbjct: 51  GLNPSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVDCIDMWFHS 110

Query: 148 HVTCPLCRSEVKPEPGSESGPSNDPVELVLDVCEP 183
           H +CPLCRS ++P  G   G  +   E+ + + +P
Sbjct: 111 HSSCPLCRSLIEPFAG---GVKSTMDEVAISISDP 142

[Close]
BLAST of Carg05518 vs. TAIR10
Match: AT3G62690.1 (AtL5)

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-21
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 0 

Query: 78  EPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPV-YCAVCLSEFEENEIGRTIPKCNHSF 137
           +P  +++S   L  ++L+ +P+FV+S+K    P+  C+VCLSEFEE++ GR +PKC H F
Sbjct: 77  DPTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVF 136

Query: 138 HVGCIDMWFYSHVTCPLCRSEV-------KPEPGSESGPSNDPVE 175
           HV CID WF S  +CPLCR+ V       +PEP +   PS  P+E
Sbjct: 137 HVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIE 181

[Close]
BLAST of Carg05518 vs. TAIR10
Match: AT2G47560.1 (RING/U-box superfamily protein)

HSP 1 Score: 98.2 bits (243), Expect = 7.6e-21
Identity = 65/163 (39.88%), Postives = 88/163 (53.99%), Query Frame = 0 

Query: 82  AAASSRGLPQSILKSLPVFVHSMK---PDPDPVYCAVCLSEFEENEIGRTIPKCNHSFHV 141
           A+   + L Q++L  +P+FV+S K          C+VCLSEFEE + GR +PKC HSFHV
Sbjct: 74  ASPRDQALDQAVLDKIPIFVYSSKXXXXXXXXXXCSVCLSEFEEEDEGRLLPKCGHSFHV 133

Query: 142 GCIDMWFYSHVTCPLCRSEVKP-----EPGSESGPSNDPVELVLDVCEPGSRSSEDEPVR 201
            CID WF S  TCPLCR+ V+P     E GS S  S+ P+    + C       E EP+ 
Sbjct: 134 DCIDTWFRSRSTCPLCRAPVQPPFQVIETGSSS--SSSPLTFPTEGC-------EREPID 193

Query: 202 ECPVEMAASVEMVDDESRPVAGMSETTTSFVKS--LSLKRILS 235
              + +  S E+  + S P   + E  + F  S  LSLKR+ S
Sbjct: 194 LAGIIVDISREVEFEGSNPGLPI-ENGSKFPGSRVLSLKRLWS 226

[Close]
BLAST of Carg05518 vs. TAIR10
Match: AT1G35330.1 (RING/U-box superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-19
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 0 

Query: 85  SSRGLPQSILKSLPVFVHS----MKPDPDPVYCAVCLSEFEENEIGRTIPKCNHSFHVGC 144
           +SRGL + ++ S P F++S    +K     V CA+CL+EFE+ E  R +P C+H+FH  C
Sbjct: 96  TSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASC 155

Query: 145 IDMWFYSHVTCPLCRSEVKPEPGSE 166
           ID+W  S  TCP+CR+ + P+PGS+
Sbjct: 156 IDVWLSSRSTCPVCRASLPPKPGSD 180

[Close]
BLAST of Carg05518 vs. Swiss-Prot
Match: sp|Q8L9T5|ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-28
Identity = 116/187 (62.03%), Postives = 133/187 (71.12%), Query Frame = 0 

Query: 16  SSFKSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEF 75
           S  K+YA+SGKIML A+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   F
Sbjct: 19  SGSKTYAMSGKIMLSAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVFF 78

Query: 76  PMEPRIAAAS---SRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEENEIGRTIPKC 135
             +P  AA S   SRGL  +++KSLPVF  S +   DP+ CAVCLSEFEE+E GR +P C
Sbjct: 79  TADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNC 138

Query: 136 NHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLD-------VCEPGSR 192
            H+FHV CIDMWF+SH TCPLCRS V+   G ES  +    E+V+        V EP S 
Sbjct: 139 QHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPVLVIEPSSS 198

[Close]
BLAST of Carg05518 vs. Swiss-Prot
Match: sp|Q8LF65|ATL17_ARATH (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-21
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 0 

Query: 88  GLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEENEIGRTIPKCNHSFHVGCIDMWFYS 147
           GL  SI+KSLP+F  S       + C+VCLSEF++NE GR +P C H+FHV CIDMWF+S
Sbjct: 51  GLNPSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHS 110

Query: 148 HVTCPLCRSEVKPEPGSESGPSNDPVELVLDVCEP 183
           H +CPLCRS+++P  G   G  +   E+ + + +P
Sbjct: 111 HSSCPLCRSQIEPFAG---GVKSSMDEVAISISDP 142

[Close]
BLAST of Carg05518 vs. Swiss-Prot
Match: sp|Q9LZJ6|ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.1e-20
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 0 

Query: 78  EPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPV-YCAVCLSEFEENEIGRTIPKCNHSF 137
           +P  +++S   L  ++L+ +P+FV+S+K    P+  C+VCLSEFEE++ GR +PKC H F
Sbjct: 77  DPTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVF 136

Query: 138 HVGCIDMWFYSHVTCPLCRSEV-------KPEPGSESGPSNDPVE 175
           HV CID WF S  +CPLCR+ V       +PEP +   PS  P+E
Sbjct: 137 HVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIE 181

[Close]
BLAST of Carg05518 vs. Swiss-Prot
Match: sp|O22255|ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-19
Identity = 65/163 (39.88%), Postives = 88/163 (53.99%), Query Frame = 0 

Query: 82  AAASSRGLPQSILKSLPVFVHSMK---PDPDPVYCAVCLSEFEENEIGRTIPKCNHSFHV 141
           A+   + L Q++L  +P+FV+S K          C+VCLSEFEE + GR +PKC HSFHV
Sbjct: 74  ASPRDQALDQAVLDKIPIFVYSSKXXXXXXXXXXCSVCLSEFEEEDEGRLLPKCGHSFHV 133

Query: 142 GCIDMWFYSHVTCPLCRSEVKP-----EPGSESGPSNDPVELVLDVCEPGSRSSEDEPVR 201
            CID WF S  TCPLCR+ V+P     E GS S  S+ P+    + C       E EP+ 
Sbjct: 134 DCIDTWFRSRSTCPLCRAPVQPPFQVIETGSSS--SSSPLTFPTEGC-------EREPID 193

Query: 202 ECPVEMAASVEMVDDESRPVAGMSETTTSFVKS--LSLKRILS 235
              + +  S E+  + S P   + E  + F  S  LSLKR+ S
Sbjct: 194 LAGIIVDISREVEFEGSNPGLPI-ENGSKFPGSRVLSLKRLWS 226

[Close]
BLAST of Carg05518 vs. Swiss-Prot
Match: sp|Q9C7I1|ATL34_ARATH (RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-17
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 0 

Query: 85  SSRGLPQSILKSLPVFVHS----MKPDPDPVYCAVCLSEFEENEIGRTIPKCNHSFHVGC 144
           +SRGL + ++ S P F++S    +K     V CA+CL+EFE+ E  R +P C+H+FH  C
Sbjct: 96  TSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASC 155

Query: 145 IDMWFYSHVTCPLCRSEVKPEPGSE 166
           ID+W  S  TCP+CR+ + P+PGS+
Sbjct: 156 IDVWLSSRSTCPVCRASLPPKPGSD 180

[Close]
BLAST of Carg05518 vs. TrEMBL
Match: tr|A0A0A0KF25|A0A0A0KF25_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318710 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.9e-64
Identity = 177/236 (75.00%), Postives = 192/236 (81.36%), Query Frame = 0 

Query: 12  LFSPSSFKSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 71
           L  P S+  YALSGKIMLGA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 10  LLYPPSYTRYALSGKIMLGAIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 69

Query: 72  XXEFPMEPRIAAAS--SRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEENEIGRTI 131
              F  EPRIAAA   SRGLPQSILKSLPVFVHS K DPDP+YCAVCLSEFEENEIGR+I
Sbjct: 70  FV-FTAEPRIAAAGVPSRGLPQSILKSLPVFVHSEKTDPDPIYCAVCLSEFEENEIGRSI 129

Query: 132 PKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDVCEPGSRSSED 191
           PKCNHSFHVGCIDMWFYSH TCPLCRSEVKPEP  ESGP +DP E+ +DVCE GSRS E+
Sbjct: 130 PKCNHSFHVGCIDMWFYSHATCPLCRSEVKPEPECESGPHDDPGEIAIDVCELGSRSGEE 189

Query: 192 EPVRECPVEMAASVEMVDDESRPVAGMSE-----TTTSFVKSLSLKRILSRDATKR 241
           E    CPVEMAASVE+VDDESR V  MS+      T +FVKSLS+K  +    ++R
Sbjct: 190 ETDHRCPVEMAASVEVVDDESRHVNDMSDDGTSRATVNFVKSLSVKEEIEAVGSER 244

[Close]
BLAST of Carg05518 vs. TrEMBL
Match: tr|A0A1S3C7X4|A0A1S3C7X4_CUCME (RING-H2 finger protein ATL2-like OS=Cucumis melo OX=3656 GN=LOC103497834 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.6e-60
Identity = 176/238 (73.95%), Postives = 192/238 (80.67%), Query Frame = 0 

Query: 12  LFSPSSFKSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 71
           LFSP S++ YALSGKIMLGA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 10  LFSPPSYRRYALSGKIMLGAIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 69

Query: 72  XXE--FPMEPRIAAAS--SRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEENEIGR 131
           XX   F  EPRIAAA   SRGLPQSILKSLPVFVH  K DPDP+YCAVCLSEFEENEIGR
Sbjct: 70  XXXXVFTAEPRIAAAGAPSRGLPQSILKSLPVFVHLAKTDPDPIYCAVCLSEFEENEIGR 129

Query: 132 TIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDVCEPGSRSS 191
           +IPKCNH FHVGCIDMWFYSHVTCPLCRSEVKPEPG  SGP     E+ +DV E GSRS 
Sbjct: 130 SIPKCNHRFHVGCIDMWFYSHVTCPLCRSEVKPEPGCGSGPCG---EIAIDVSEVGSRSG 189

Query: 192 EDEPVRECPVEMAASVEMVDDESRPVAGMSE-----TTTSFVKSLSLKRILSRDATKR 241
           E+E    CPVEMAASVE+V+DESR V  MS+      T +FVKSLS+K  +    ++R
Sbjct: 190 EEERDGGCPVEMAASVEVVEDESRHVNDMSDDGTSRATVNFVKSLSVKEEIEAAGSER 244

[Close]
BLAST of Carg05518 vs. TrEMBL
Match: tr|A0A2P6QYJ5|A0A2P6QYJ5_ROSCH (Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0423331 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.3e-30
Identity = 100/168 (59.52%), Postives = 117/168 (69.64%), Query Frame = 0 

Query: 19  KSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFPME 78
           K YALSGKIML A+ XXXXXXXXX              XXXXXXXXXXXXXXX      E
Sbjct: 30  KGYALSGKIMLSAIVXXXXXXXXXVCLHLYARWYLLRAXXXXXXXXXXXXXXXLIFHEDE 89

Query: 79  PRIAAASS-RGLPQSILKSLPVFVHSMKPDPDPVY-CAVCLSEFEENEIGRTIPKCNHSF 138
              A + + RGL +S+LKSLPVFV+  K  P+P+  CAVCLSEFEENE GR +PKC HSF
Sbjct: 90  ATAAVSDAMRGLDESVLKSLPVFVYDSKTHPEPILECAVCLSEFEENETGRVLPKCKHSF 149

Query: 139 HVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDVCEPGS 185
           H+ CIDMWF+SH TCPLCR  V+P+P SE     +P ++VL+VCEP S
Sbjct: 150 HIECIDMWFHSHSTCPLCRCAVEPQPESE-----NPGDVVLNVCEPES 192

[Close]
BLAST of Carg05518 vs. TrEMBL
Match: tr|A0A2P5CLT3|A0A2P5CLT3_PARAD (43kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_142100 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.8e-29
Identity = 96/186 (51.61%), Postives = 111/186 (59.68%), Query Frame = 0 

Query: 13  FSPSSFKSYALSGKIMLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 72
           FSP + KSYALSGKIML A+    XXXXX                    XXXXXXX    
Sbjct: 38  FSPLNDKSYALSGKIMLSAIVILFXXXXXMVCLHLYARWYLLRVRRRNSXXXXXXXSHLV 97

Query: 73  XEFPMEPRIAAASSRGLPQSILKSLPVFVHSMK---PDPDP----VYCAVCLSEFEENEI 132
             F ++P   AAS+RGL  ++L SLPVFV+S K   P+ DP    + CAVCLSEFEENE 
Sbjct: 98  --FHVDPASVAASTRGLDPAVLNSLPVFVYSAKTHLPESDPDHPAMECAVCLSEFEENET 157

Query: 133 GRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLDVCEPGSR 192
           GR +PKCNHSFH  CIDMWF+SH TCPLCRS V+P P        DP E+  +VC     
Sbjct: 158 GRRLPKCNHSFHTECIDMWFHSHSTCPLCRSPVEPGP--------DP-EIRTEVCIVVGE 212

[Close]
BLAST of Carg05518 vs. TrEMBL
Match: tr|V4RFV8|V4RFV8_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005780mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.1e-29
Identity = 70/113 (61.95%), Postives = 82/113 (72.57%), Query Frame = 0 

Query: 82  AAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFEENEIGRTIPKCNHSFHVGCI 141
           +A SSRGL  S+LKSLPVFV+S K   D + CAVCLSEFEENE GR +P CNHSFH+GCI
Sbjct: 77  SATSSRGLDSSVLKSLPVFVYSSKTHADAMDCAVCLSEFEENESGRVLPGCNHSFHIGCI 136

Query: 142 DMWFYSHVTCPLCRSEVK---PEPGSESGPSNDPVELVLDVCEPGSRSSEDEP 192
           DMWF+SH TCPLCR+ V+    +P     P N PV + + V EPGS SS DEP
Sbjct: 137 DMWFHSHSTCPLCRTPVELVTAQPEDPVQPDN-PVPVRVSVHEPGS-SSIDEP 187

The following BLAST results are available for this feature:
BLAST of Carg05518 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958821.18.8e-10097.21RING-H2 finger protein ATL2-like [Cucurbita moschata][more]
XP_023548720.11.7e-9594.84RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo][more]
XP_023006465.13.2e-9492.92RING-H2 finger protein ATL2-like [Cucurbita maxima][more]
XP_004150504.16.0e-6475.00PREDICTED: RING-H2 finger protein ATL2-like [Cucumis sativus] >KGN47424.1 hypoth... [more]
XP_008458410.14.0e-6073.95PREDICTED: RING-H2 finger protein ATL2-like [Cucumis melo][more]
BLAST of Carg05518 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G16720.11.5e-2962.03TOXICOS EN LEVADURA 2[more]
AT4G15975.14.0e-2248.42RING/U-box superfamily protein[more]
AT3G62690.13.4e-2144.76AtL5[more]
AT2G47560.17.6e-2139.88RING/U-box superfamily protein[more]
AT1G35330.17.1e-1944.71RING/U-box superfamily protein[more]
BLAST of Carg05518 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8L9T5|ATL2_ARATH2.8e-2862.03RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2[more]
sp|Q8LF65|ATL17_ARATH1.9e-2148.42RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2[more]
sp|Q9LZJ6|ATL5_ARATH6.1e-2044.76RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1[more]
sp|O22255|ATL64_ARATH1.4e-1939.88RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1[more]
sp|Q9C7I1|ATL34_ARATH1.3e-1744.71RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1[more]
BLAST of Carg05518 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KF25|A0A0A0KF25_CUCSA3.9e-6475.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318710 PE=4 SV=1[more]
tr|A0A1S3C7X4|A0A1S3C7X4_CUCME2.6e-6073.95RING-H2 finger protein ATL2-like OS=Cucumis melo OX=3656 GN=LOC103497834 PE=4 SV... [more]
tr|A0A2P6QYJ5|A0A2P6QYJ5_ROSCH8.3e-3059.52Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm... [more]
tr|A0A2P5CLT3|A0A2P5CLT3_PARAD1.8e-2951.6143kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_142100... [more]
tr|V4RFV8|V4RFV8_9ROSI4.1e-2961.95Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005780mg PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05518-RACarg05518-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 113..154
e-value: 5.2E-6
score: 36.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 113..155
e-value: 3.7E-11
score: 43.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 113..155
score: 12.43
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 78..161
e-value: 8.4E-18
score: 65.8
NoneNo IPR availablePANTHERPTHR14155:SF232RING-H2 FINGER PROTEIN ATL2-RELATEDcoord: 23..178
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 23..178
NoneNo IPR availableCDDcd16461RING-H2_EL5_likecoord: 113..155
e-value: 1.85399E-17
score: 72.7279
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 94..161

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05518Cla021758Watermelon (97103) v1carwmB0070
Carg05518Cla009289Watermelon (97103) v1carwmB0073
Carg05518Csa3G164500Cucumber (Chinese Long) v2carcuB0071
Carg05518Csa6G318710Cucumber (Chinese Long) v2carcuB0079
Carg05518MELO3C021312Melon (DHL92) v3.5.1carmeB0067
Carg05518MELO3C006682Melon (DHL92) v3.5.1carmeB0074
Carg05518ClCG06G004970Watermelon (Charleston Gray)carwcgB0073
Carg05518CSPI06G17490Wild cucumber (PI 183967)carcpiB0083
Carg05518CSPI03G14620Wild cucumber (PI 183967)carcpiB0075
Carg05518Cucsa.069210Cucumber (Gy14) v1carcgyB0074
Carg05518Cucsa.252890Cucumber (Gy14) v1carcgyB0083
Carg05518CmaCh17G003400Cucurbita maxima (Rimu)carcmaB0091
Carg05518CmoCh14G016490Cucurbita moschata (Rifu)carcmoB0096
Carg05518Lsi09G014490Bottle gourd (USVL1VR-Ls)carlsiB061
Carg05518Lsi05G015570Bottle gourd (USVL1VR-Ls)carlsiB065
Carg05518Cp4.1LG17g00640Cucurbita pepo (Zucchini)carcpeB0102
Carg05518Cp4.1LG03g11560Cucurbita pepo (Zucchini)carcpeB0106
Carg05518Cp4.1LG12g02840Cucurbita pepo (Zucchini)carcpeB0099
Carg05518CsGy6G016920Cucumber (Gy14) v2carcgybB0079
Carg05518CsGy3G014770Cucumber (Gy14) v2carcgybB0072
Carg05518MELO3C021312.2Melon (DHL92) v3.6.1carmedB0068
Carg05518MELO3C006682.2Melon (DHL92) v3.6.1carmedB0075
Carg05518CsaV3_6G023850Cucumber (Chinese Long) v3carcucB0086
Carg05518CsaV3_3G014860Cucumber (Chinese Long) v3carcucB0079
Carg05518Cla97C05G087800Watermelon (97103) v2carwmbB0069
Carg05518Cla97C06G114460Watermelon (97103) v2carwmbB0070
Carg05518Bhi12G001805Wax gourdcarwgoB0084
Carg05518Bhi01G000739Wax gourdcarwgoB0086
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg05518Carg19652Silver-seed gourdcarcarB079
Carg05518Carg18855Silver-seed gourdcarcarB085
The following block(s) are covering this gene:
GeneOrganismBlock
Carg05518Cucurbita pepo (Zucchini)carcpeB0098
Carg05518Cucurbita pepo (Zucchini)carcpeB0108
Carg05518Cucurbita pepo (Zucchini)carcpeB0109
Carg05518Wild cucumber (PI 183967)carcpiB0073
Carg05518Wild cucumber (PI 183967)carcpiB0082
Carg05518Cucumber (Chinese Long) v2carcuB0078
Carg05518Cucumber (Chinese Long) v2carcuB0070
Carg05518Cucumber (Chinese Long) v3carcucB0077
Carg05518Cucumber (Chinese Long) v3carcucB0085
Carg05518Bottle gourd (USVL1VR-Ls)carlsiB062
Carg05518Bottle gourd (USVL1VR-Ls)carlsiB064
Carg05518Melon (DHL92) v3.5.1carmeB0072
Carg05518Melon (DHL92) v3.6.1carmedB0073
Carg05518Watermelon (Charleston Gray)carwcgB0071
Carg05518Watermelon (Charleston Gray)carwcgB0072
Carg05518Watermelon (97103) v1carwmB0071
Carg05518Watermelon (97103) v2carwmbB0068
Carg05518Cucumber (Gy14) v2carcgybB0070
Carg05518Cucumber (Gy14) v2carcgybB0078
Carg05518Cucumber (Gy14) v1carcgyB0076
Carg05518Cucurbita maxima (Rimu)carcmaB0089
Carg05518Cucurbita maxima (Rimu)carcmaB0096
Carg05518Cucurbita moschata (Rifu)carcmoB0095
Carg05518Cucurbita moschata (Rifu)carcmoB0097
Carg05518Cucurbita moschata (Rifu)carcmoB0104