Cucsa.061510 (gene) Cucumber (Gy14) v1

NameCucsa.061510
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionDomain of unknown function (DUF543)
Locationscaffold00651 : 47377 .. 51720 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTATTACCTTTTTCCCCCTTCTCACAAAGCCGAAAGAATTGCAGGAAATTCAGAAGAAGAAGAAGGTTGAAGAAAAGAAGTGGGAGAGGATATCATACAACTTTATCCCTTGATAGCGTCTGACATTTCCTTCCTGGATATGGCTGAGAACAAAGGGGTTGTTCCTCCACCCCACGATTTGAGTGCCAAGTGGGATGCTTGTCTTGATTTGACGCTGCGTCGATTCGTTTACTCTTCCTTCGCTGGTGCATTTGGTGGCCTCCTTTTCTTCAGTAATGATAATCATAATTCCTTCTCACCCTTTCTCTTTTTTTATTTTCACCTTTTTATACTTTCCTAATCTTCACATGGCGGATGTTACAGTTTTAACCCAAGCATTTCTTTCTCTCGCTATTATTTCCTATAAATTGGAATTGCATGTTATTACATTGGATCAATCGTATATTATGATTTTTTTtCGTCTGTCGATTTGGAATGTATGTTTATCAACAAATGAAAGAGATGTACAGATTTATTCTGCGACGAGACTGTAAACTTAAGAAATTTAGGTTCGCTTAACTTGGCTCTTCACATATTTGGTGAGCATTTTTTTCTGTACTACTCGTGTATCCATTTACAAATATCAGGATTTTCTACGTTTTTGTTAAGCAAACTTGTGAATTTGAACCCAGTCAGCCAATTTCGGACATGCAGGATTTTTGCAAAATAAACGGCCTCTTTTGTTGTTTATGTTGAAGTACCGAACTCGTTAATCAATGTTTTATCATGTTTCTGAAACTTCAGTTGTTTGATTCTAATAAACTCACTAATGAGCACTGTATCGTGATTTACGACTAGGGAGTCCGGTGACTCGTTGGGCTTCTATAGCTTTTGGCGCTGGATTGGGCATTGGATCAGCATACACAGATTGTAATTCTTTATTTGAAGGTTCCACCGCCAAATTCACATCTCCAAAAATCACAGAGGCTCAGCCTTCACAGGTGAAATTCAGATGTACAGTAAAACCATCTCCTTGAATTAGAGTGTGTTTTGAATACATTCTCAAATGTTTAATTTAAAAAaTAAGTTATTTTGGAAAAAaTTTAGGTGTTTGAAAAACACGGGCCCTTAATCTGTTTAATGTGATATTATTTGATCAACCTTTTTTATTTGATAATGTGAAAAACACGTCCTAGAAGTACATACAATTTGTTTTTGACGAAGTGTCTATGTTGGATACGTCACCTTTTTTTTtGTAATAAATTGCTCATATGGTTGACACATCATGATCATACTAACATTTAATAAATTGTCCATGTGGTTGCACCTTCATTTTGGTAAGTTTAGATAGGTGGTGGGGCTGAGAGTGACATTAGATCATTGGCCAATCATTCTCAGCTCGAGTATTCAGAAATGTGCACCTGACCCTTCAGGTTCGCATATGTGATTAAACATCTTTCCTCTAAGTCCTCTTAATCATTAAGATGGAATGAATCAGTAGCTGGGAAGTGGAAGCATTTTGATTTATTGGAAAGTTAAGATACCTTAAAA

mRNA sequence

GGCTATTACCTTTTTCCCCCTTCTCACAAAGCCGAAAGAATTGCAGGAAATTCAGAAGAAGAAGAAGGTTGAAGAAAAGAAGTGGGAGAGGATATCATACAACTTTATCCCTTGATAGCGTCTGACATTTCCTTCCTGGATATGGCTGAGAACAAAGGGGTTGTTCCTCCACCCCACGATTTGAGTGCCAAGTGGGATGCTTGTCTTGATTTGACGCTGCGTCGATTCGTTTACTCTTCCTTCGCTGGTGCATTTGGTGGCCTCCTTTTCTTCAGGAGTCCGGTGACTCGTTGGGCTTCTATAGCTTTTGGCGCTGGATTGGGCATTGGATCAGCATACACAGATTGTAATTCTTTATTTGAAGGTTCCACCGCCAAATTCACATCTCCAAAAATCACAGAGGCTCAGCCTTCACAGGTGAAATTCAGATGTACAGTAAAACCATCTCCTTGAATTAGAgtgtgttttgaatacattctcaaatgtttaatttaaaaaataagttattttggaaaaaatttaggtgtttgaaaaacacGGGCCCTTAATCTGTTTAATGTGATATTATTTGATCAACCTTTTTTATTTGATAATGTGAAAAACACGTCCTAGAAGTACATACAATTTGTTTTTGACGAAGTGTCTATGTTGGATACGTCACCTTTTTTTTTGTAATAAATTGCTCATATGGTTGACACATCATGATCATACTAACATTTAATAAATTGTCCATGTGGTTGCACCTTCATtttggtaagtttagataggtggtggggctgagagtgacattagatcattggccaatcattctcagctcgagtattcagaaatgtgcacctgacccttcaggttcgcatatgtgattaaacatctttcctctaagtcctcttaatcattaagatggaatgaatcagtagctgggaagtggaagcattttgatttattggaaagttaagataccttaaaa

Coding sequence (CDS)

ATGGCTGAGAACAAAGGGGTTGTTCCTCCACCCCACGATTTGAGTGCCAAGTGGGATGCTTGTCTTGATTTGACGCTGCGTCGATTCGTTTACTCTTCCTTCGCTGGTGCATTTGGTGGCCTCCTTTTCTTCAGGAGTCCGGTGACTCGTTGGGCTTCTATAGCTTTTGGCGCTGGATTGGGCATTGGATCAGCATACACAGATTGTAATTCTTTATTTGAAGGTTCCACCGCCAAATTCACATCTCCAAAAATCACAGAGGCTCAGCCTTCACAGGTGAAATTCAGATGTACAGTAAAACCATCTCCTTGA

Protein sequence

MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVKFRCTVKPSP*
BLAST of Cucsa.061510 vs. TrEMBL
Match: A0A0A0KUY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652290 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV 94
          GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV 93

BLAST of Cucsa.061510 vs. TrEMBL
Match: D7U9C9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0041g00360 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.6e-32
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 1

Query: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENK + PPP+DL AKWDACLDLT+RRFVYSSFAGAFGGLL FRSPVTRWAS+AFGAGL
Sbjct: 1  MAENKQI-PPPYDLDAKWDACLDLTVRRFVYSSFAGAFGGLLLFRSPVTRWASVAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 93
          G+GSAYT+C+  F G  A F  PKI++A  SQ
Sbjct: 61 GLGSAYTECSQKFGGYPAMFLPPKISDAPASQ 91

BLAST of Cucsa.061510 vs. TrEMBL
Match: A0A061FS50_THECC (Domain of Uncharacterized protein function OS=Theobroma cacao GN=TCM_036507 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-31
Identity = 64/93 (68.82%), Postives = 80/93 (86.02%), Query Frame = 1

Query: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAE+K ++P  +D++AKWDACLDLT+RRFVYSS AGAFGGLLFFRSPVTRWA++AFGAG+
Sbjct: 1  MAEDKDLMPAKYDVNAKWDACLDLTVRRFVYSSMAGAFGGLLFFRSPVTRWAAVAFGAGI 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV 94
          GIGSAYTDC+ +F+GS+A    PK+ +A   QV
Sbjct: 61 GIGSAYTDCSRIFDGSSATLAPPKLADAPAPQV 93

BLAST of Cucsa.061510 vs. TrEMBL
Match: M5XGA8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013917mg PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.9e-31
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 1

Query: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MA+NK   PP +D++AKWDACLDLT+RRFVYSS  GAFGGLL FRSPV+RWAS+AFGAGL
Sbjct: 1  MADNKEFFPPQYDVNAKWDACLDLTVRRFVYSSLGGAFGGLLLFRSPVSRWASVAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 93
          GIGSAYT+C+ LFEGS AK  +PKI E    Q
Sbjct: 61 GIGSAYTECSRLFEGSPAKLAAPKIIETPAPQ 92

BLAST of Cucsa.061510 vs. TrEMBL
Match: A0A0D2U126_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G137900 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.4e-31
Identity = 64/88 (72.73%), Postives = 75/88 (85.23%), Query Frame = 1

Query: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          M ENK + P  +D++AKWDAC+DLTLRRFVYSS AGAFGGLLFFRSPVTRWAS+AFGAG+
Sbjct: 1  MGENKELTPSKYDMNAKWDACIDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASVAFGAGI 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEA 89
          GIGSAYTDC+SLF G + K   PK+ +A
Sbjct: 61 GIGSAYTDCSSLFGGYSPKLAPPKLDDA 88

BLAST of Cucsa.061510 vs. TAIR10
Match: AT1G72170.1 (AT1G72170.1 Domain of unknown function (DUF543))

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-30
Identity = 64/95 (67.37%), Postives = 74/95 (77.89%), Query Frame = 1

Query: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAE K  VPP +D++AKWDACLDLT+RRFVYSS  GAF GLLFFRSPVTRWASIA GAG+
Sbjct: 1  MAEKKDSVPPEYDVNAKWDACLDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASIALGAGI 60

Query: 61 GIGSAYTDCNSLFE---GSTAKFTSPK--ITEAQP 91
          GIGSAY+DC+  F+    S+A   +PK  ITE  P
Sbjct: 61 GIGSAYSDCSRAFDSPSSSSANLAAPKNNITETSP 95

BLAST of Cucsa.061510 vs. TAIR10
Match: AT1G22520.2 (AT1G22520.2 Domain of unknown function (DUF543))

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-28
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 1

Query: 13 DLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGLGIGSAYTDCNSL 72
          D++AKWDACLDLT RRFVYSS  GAF GLLFFRSPVTRWASIAFGAG+GIGSAYTDC+ +
Sbjct: 12 DVNAKWDACLDLTARRFVYSSLGGAFAGLLFFRSPVTRWASIAFGAGIGIGSAYTDCSRV 71

Query: 73 FEGSTAK----FTSPKITEAQPSQV 94
          F+ S++       +PK TE   SQV
Sbjct: 72 FDASSSTSATLLAAPKSTETSVSQV 96

BLAST of Cucsa.061510 vs. NCBI nr
Match: gi|778708139|ref|XP_011656128.1| (PREDICTED: MICOS complex subunit Mic10 isoform X2 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 2.8e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVKFR 97
          GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVKFR
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVKFR 96

BLAST of Cucsa.061510 vs. NCBI nr
Match: gi|659119496|ref|XP_008459688.1| (PREDICTED: uncharacterized protein LOC103498730 isoform X2 [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 5.4e-47
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 1

Query: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENKGVVPPPHDL+AKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVKF 96
          GIGSAYTDCNSLF+GSTAKFTSPKITEAQPSQVKF
Sbjct: 61 GIGSAYTDCNSLFQGSTAKFTSPKITEAQPSQVKF 95

BLAST of Cucsa.061510 vs. NCBI nr
Match: gi|700197547|gb|KGN52724.1| (hypothetical protein Csa_5G652290 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV 94
          GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV 93

BLAST of Cucsa.061510 vs. NCBI nr
Match: gi|449447629|ref|XP_004141570.1| (PREDICTED: MICOS complex subunit Mic10 isoform X1 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

Query: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 93
          GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 92

BLAST of Cucsa.061510 vs. NCBI nr
Match: gi|659119494|ref|XP_008459687.1| (PREDICTED: uncharacterized protein LOC103498730 isoform X1 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 2.9e-45
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 1

Query: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENKGVVPPPHDL+AKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 93
          GIGSAYTDCNSLF+GSTAKFTSPKITEAQPSQ
Sbjct: 61 GIGSAYTDCNSLFQGSTAKFTSPKITEAQPSQ 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KUY2_CUCSA1.4e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652290 PE=4 SV=1[more]
D7U9C9_VITVI7.6e-3275.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0041g00360 PE=4 SV=... [more]
A0A061FS50_THECC2.2e-3168.82Domain of Uncharacterized protein function OS=Theobroma cacao GN=TCM_036507 PE=4... [more]
M5XGA8_PRUPE2.9e-3171.74Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013917mg PE=4 SV=1[more]
A0A0D2U126_GOSRA8.4e-3172.73Uncharacterized protein OS=Gossypium raimondii GN=B456_013G137900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G72170.11.3e-3067.37 Domain of unknown function (DUF543)[more]
AT1G22520.22.0e-2869.41 Domain of unknown function (DUF543)[more]
Match NameE-valueIdentityDescription
gi|778708139|ref|XP_011656128.1|2.8e-48100.00PREDICTED: MICOS complex subunit Mic10 isoform X2 [Cucumis sativus][more]
gi|659119496|ref|XP_008459688.1|5.4e-4797.89PREDICTED: uncharacterized protein LOC103498730 isoform X2 [Cucumis melo][more]
gi|700197547|gb|KGN52724.1|2.0e-46100.00hypothetical protein Csa_5G652290 [Cucumis sativus][more]
gi|449447629|ref|XP_004141570.1|5.9e-46100.00PREDICTED: MICOS complex subunit Mic10 isoform X1 [Cucumis sativus][more]
gi|659119494|ref|XP_008459687.1|2.9e-4597.83PREDICTED: uncharacterized protein LOC103498730 isoform X1 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007512Mic10
IPR007512Mic10
IPR007512Mic10
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.061510.1Cucsa.061510.1mRNA
Cucsa.061510.2Cucsa.061510.2mRNA
Cucsa.061510.3Cucsa.061510.3mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007512Protein of unknown function DUF543PANTHERPTHR21304UNCHARACTERIZEDcoord: 1..92
score: 6.8
IPR007512Protein of unknown function DUF543PFAMPF04418DUF543coord: 5..73
score: 1.5
NoneNo IPR availablePANTHERPTHR21304:SF0MITOCHONDRIAL INNER MEMBRANE ORGANIZING SYSTEM PROTEIN F54A3.5coord: 1..92
score: 6.8