Cla003860 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003860
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007512 Protein of unknown function DUF543
Location	Chr8 : 3800803 .. 3801599 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGAACAAAGGTTTTGCTGAGAACAAAGGGGTTGTGTCTCCACCGCACGATTTGAATGCCAAGTGGGACGCTTGTCTTGATTTGACGCTCCGTCGATTCGTTTACTCTTCCTTGGCTGGTGCATTTGGTGGCCTCCTTTTCTTCAGTAATATTAATTCCTCCTCACTCTTTTTCTCTTTGCTTATTTCCATCTTATTATATTTTCCTACTCTTCATATGCCGGATTTCAAACATTGGAGTTATTTCTTTTCAACCATTTCTTTCTCTCGCTATTCTTTCCTAAAATTTGGAATTGCATGTCATTCCATTGCATCAACCAATTGTTCAGATTTTTTCATCTCTCGACAGGATAGGGTTCGTTGCATCCTCGAATATCTGGATTTTCTTGATTTGTGTTAAGCAAACTTGTGAATTTGAACCCAGTTACCCACTTGTTGACATCCAGGATTTTTCTAAAATAAATGCCCTCTTTGGTTGTTTATTTTGAAGCACTTGAACTCAATAATGTACCAATTTTTAATCATTTTTCTGAAACATCAGCTGTTAGTTGTATGGTTTCAATAAACTTAATATACTAATAAGCTCTGTATCTTGATTAACAACTAGGGAGTCCGGTGACTCGTTGGGCATCTATAGCTTTTGGTGCTGGATTGGGCATTGGATCAGCATACACGGATTGTAATTCATTATTTGAAGGTTCCACCACAAAATTCGCATCTCCAAAAATCACAGAGGCTCAGCCTTCACAGGTGAAACTCACATTTTCTTTTACAGTGGAATCGTCTCCTTGA

mRNA sequence

ATGGCTGAGAACAAAGGTTTTGCTGAGAACAAAGGGGTTGTGTCTCCACCGCACGATTTGAATGCCAAGTGGGACGCTTGTCTTGATTTGACGCTCCGTCGATTCGTTTACTCTTCCTTGGCTGGTGCATTTGGTGGCCTCCTTTTCTTCAGGAGTCCGGTGACTCGTTGGGCATCTATAGCTTTTGGTGCTGGATTGGGCATTGGATCAGCATACACGGATTGTAATTCATTATTTGAAGGTTCCACCACAAAATTCGCATCTCCAAAAATCACAGAGGCTCAGCCTTCACAGGTGAAACTCACATTTTCTTTTACAGTGGAATCGTCTCCTTGA

Coding sequence (CDS)

ATGGCTGAGAACAAAGGTTTTGCTGAGAACAAAGGGGTTGTGTCTCCACCGCACGATTTGAATGCCAAGTGGGACGCTTGTCTTGATTTGACGCTCCGTCGATTCGTTTACTCTTCCTTGGCTGGTGCATTTGGTGGCCTCCTTTTCTTCAGGAGTCCGGTGACTCGTTGGGCATCTATAGCTTTTGGTGCTGGATTGGGCATTGGATCAGCATACACGGATTGTAATTCATTATTTGAAGGTTCCACCACAAAATTCGCATCTCCAAAAATCACAGAGGCTCAGCCTTCACAGGTGAAACTCACATTTTCTTTTACAGTGGAATCGTCTCCTTGA

Protein sequence

MAENKGFAENKGVVSPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTTKFASPKITEAQPSQVKLTFSFTVESSP

Homology

[Close]

BLAST of Cla003860 vs. TrEMBL
Match: A0A0A0KUY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652290 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.0e-43
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 8   AENKGVVSPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLG 67
           AENKGVV PPHDL+AKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGLG
Sbjct: 2   AENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGLG 61

Query: 68  IGSAYTDCNSLFEGSTTKFASPKITEAQPSQV 100
           IGSAYTDCNSLFEGST KF SPKITEAQPSQV
Sbjct: 62  IGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV 93

[Close]

BLAST of Cla003860 vs. TrEMBL
Match: A0A067GWJ1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041737mg PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.1e-31
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 1


Query: 10  NKGVVSPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLGIG 69
           +K +V P +DLNAKWDAC+DLT+RRFVYSSL GAF GLLFFRSPVTRWAS+AFGAGLGIG
Sbjct: 63  SKQIVPPKYDLNAKWDACIDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASVAFGAGLGIG 122

Query: 70  SAYTDCNSLFEGSTTKFASPKITEAQPS 98
           SAYTDC+  F+GS +K ASPKI+   P+
Sbjct: 123 SAYTDCSHFFDGSPSKLASPKISSDTPA 150

[Close]

BLAST of Cla003860 vs. TrEMBL
Match: V4TE08_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002721mg PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.1e-31
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 1


Query: 10  NKGVVSPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLGIG 69
           +K +V P +DLNAKWDAC+DLT+RRFVYSSL GAF GLLFFRSPVTRWAS+AFGAGLGIG
Sbjct: 71  SKQIVPPKYDLNAKWDACIDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASVAFGAGLGIG 130

Query: 70  SAYTDCNSLFEGSTTKFASPKITEAQPS 98
           SAYTDC+  F+GS +K ASPKI+   P+
Sbjct: 131 SAYTDCSHFFDGSPSKLASPKISSDTPA 158

[Close]

BLAST of Cla003860 vs. TrEMBL
Match: M5XGA8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013917mg PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.9e-31
Identity = 66/91 (72.53%), Postives = 75/91 (82.42%), Query Frame = 1


Query: 8  AENKGVVSPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLG 67
          A+NK    P +D+NAKWDACLDLT+RRFVYSSL GAFGGLL FRSPV+RWAS+AFGAGLG
Sbjct: 2  ADNKEFFPPQYDVNAKWDACLDLTVRRFVYSSLGGAFGGLLLFRSPVSRWASVAFGAGLG 61

Query: 68 IGSAYTDCNSLFEGSTTKFASPKITEAQPSQ 99
          IGSAYT+C+ LFEGS  K A+PKI E    Q
Sbjct: 62 IGSAYTECSRLFEGSPAKLAAPKIIETPAPQ 92

[Close]

BLAST of Cla003860 vs. TrEMBL
Match: A0A0D2U126_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G137900 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.9e-31
Identity = 65/86 (75.58%), Postives = 75/86 (87.21%), Query Frame = 1


Query: 9  ENKGVVSPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLGI 68
          ENK +    +D+NAKWDAC+DLTLRRFVYSSLAGAFGGLLFFRSPVTRWAS+AFGAG+GI
Sbjct: 3  ENKELTPSKYDMNAKWDACIDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASVAFGAGIGI 62

Query: 69 GSAYTDCNSLFEGSTTKFASPKITEA 95
          GSAYTDC+SLF G + K A PK+ +A
Sbjct: 63 GSAYTDCSSLFGGYSPKLAPPKLDDA 88

[Close]

BLAST of Cla003860 vs. NCBI nr
Match: gi|659119496|ref|XP_008459688.1| (PREDICTED: uncharacterized protein LOC103498730 isoform X2 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 3.5e-44
Identity = 89/95 (93.68%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 8   AENKGVVSPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLG 67
           AENKGVV PPHDLNAKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGLG
Sbjct: 2   AENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGLG 61

Query: 68  IGSAYTDCNSLFEGSTTKFASPKITEAQPSQVKLT 103
           IGSAYTDCNSLF+GST KF SPKITEAQPSQVK T
Sbjct: 62  IGSAYTDCNSLFQGSTAKFTSPKITEAQPSQVKFT 96

[Close]

BLAST of Cla003860 vs. NCBI nr
Match: gi|778708139|ref|XP_011656128.1| (PREDICTED: MICOS complex subunit Mic10 isoform X2 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-43
Identity = 88/93 (94.62%), Postives = 89/93 (95.70%), Query Frame = 1


Query: 8   AENKGVVSPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLG 67
           AENKGVV PPHDL+AKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGLG
Sbjct: 2   AENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGLG 61

Query: 68  IGSAYTDCNSLFEGSTTKFASPKITEAQPSQVK 101
           IGSAYTDCNSLFEGST KF SPKITEAQPSQVK
Sbjct: 62  IGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVK 94

[Close]

BLAST of Cla003860 vs. NCBI nr
Match: gi|700197547|gb|KGN52724.1| (hypothetical protein Csa_5G652290 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 8.6e-43
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 8   AENKGVVSPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLG 67
           AENKGVV PPHDL+AKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGLG
Sbjct: 2   AENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGLG 61

Query: 68  IGSAYTDCNSLFEGSTTKFASPKITEAQPSQV 100
           IGSAYTDCNSLFEGST KF SPKITEAQPSQV
Sbjct: 62  IGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV 93

[Close]

BLAST of Cla003860 vs. NCBI nr
Match: gi|659119494|ref|XP_008459687.1| (PREDICTED: uncharacterized protein LOC103498730 isoform X1 [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 1.5e-42
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 8  AENKGVVSPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLG 67
          AENKGVV PPHDLNAKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGLG
Sbjct: 2  AENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGLG 61

Query: 68 IGSAYTDCNSLFEGSTTKFASPKITEAQPSQ 99
          IGSAYTDCNSLF+GST KF SPKITEAQPSQ
Sbjct: 62 IGSAYTDCNSLFQGSTAKFTSPKITEAQPSQ 92

[Close]

BLAST of Cla003860 vs. NCBI nr
Match: gi|449447629|ref|XP_004141570.1| (PREDICTED: MICOS complex subunit Mic10 isoform X1 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-42
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 8  AENKGVVSPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLG 67
          AENKGVV PPHDL+AKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGLG
Sbjct: 2  AENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGLG 61

Query: 68 IGSAYTDCNSLFEGSTTKFASPKITEAQPSQ 99
          IGSAYTDCNSLFEGST KF SPKITEAQPSQ
Sbjct: 62 IGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 92

The following BLAST results are available for this feature:

BLAST of Cla003860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUY2_CUCSA	6.0e-43	94.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652290 PE=4 SV=1	[more]
A0A067GWJ1_CITSI	3.1e-31	73.86	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041737mg PE=4 S...	[more]
V4TE08_9ROSI	3.1e-31	73.86	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002721mg PE=4 SV=1	[more]
M5XGA8_PRUPE	8.9e-31	72.53	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013917mg PE=4 SV=1	[more]
A0A0D2U126_GOSRA	8.9e-31	75.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G137900 PE=4 SV=1	[more]

BLAST of Cla003860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119496\|ref\|XP_008459688.1\|	3.5e-44	93.68	PREDICTED: uncharacterized protein LOC103498730 isoform X2 [Cucumis melo]	[more]
gi\|778708139\|ref\|XP_011656128.1\|	2.3e-43	94.62	PREDICTED: MICOS complex subunit Mic10 isoform X2 [Cucumis sativus]	[more]
gi\|700197547\|gb\|KGN52724.1\|	8.6e-43	94.57	hypothetical protein Csa_5G652290 [Cucumis sativus]	[more]
gi\|659119494\|ref\|XP_008459687.1\|	1.5e-42	94.51	PREDICTED: uncharacterized protein LOC103498730 isoform X1 [Cucumis melo]	[more]
gi\|449447629\|ref\|XP_004141570.1\|	2.5e-42	94.51	PREDICTED: MICOS complex subunit Mic10 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007512	Mic10

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0061617	MICOS complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003860	Cla003860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007512	Protein of unknown function DUF543	PANTHER	PTHR21304	UNCHARACTERIZED	coord: 1..99 score: 9.9
IPR007512	Protein of unknown function DUF543	PFAM	PF04418	DUF543	coord: 14..79 score: 9.7
None	No IPR available	PANTHER	PTHR21304:SF0	MITOCHONDRIAL INNER MEMBRANE ORGANIZING SYSTEM PROTEIN F54A3.5	coord: 1..99 score: 9.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003860	Cla97C08G144610	Watermelon (97103) v2	wmwmbB104
Cla003860	Csa5G652290	Cucumber (Chinese Long) v2	cuwmB381
Cla003860	MELO3C022229	Melon (DHL92) v3.5.1	mewmB010
Cla003860	ClCG08G000160	Watermelon (Charleston Gray)	wcgwmB404
Cla003860	CSPI05G31530	Wild cucumber (PI 183967)	cpiwmB386
Cla003860	Cucsa.061510	Cucumber (Gy14) v1	cgywmB051
Cla003860	Lsi08G000110	Bottle gourd (USVL1VR-Ls)	lsiwmB469
Cla003860	CsGy5G030790	Cucumber (Gy14) v2	cgybwmB353
Cla003860	MELO3C022229.2	Melon (DHL92) v3.6.1	medwmB008
Cla003860	CsaV3_5G040560	Cucumber (Chinese Long) v3	cucwmB403
Cla003860	Bhi06G000233	Wax gourd	wgowmB123

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003860	Cucurbita maxima (Rimu)	cmawmB016
Cla003860	Cucurbita moschata (Rifu)	cmowmB015
Cla003860	Cucurbita pepo (Zucchini)	cpewmB762