Cucsa.059610 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.059610
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Calcium-binding EF-hand family protein
Location	scaffold00621 : 158931 .. 159249 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCCAAGAACCAAATCCCCCAATCGGAATCTGGGTTCCAAGATTGGCTGCCCGTCATGGCTGGAAACCTCGGCGGCGAGGGGCTGATCGGAGAGCTCTGTAATGGGTTCAATCTGCTGATGGATAGAGAGAAGGGAGTGATCAATTTCGAGAGCTTGAAGAGGAATGCGGCGGCTTTAGGGCTCGGGGATTTGAGTGATGATGAACTCCGAGGAATGTTGCGGGAAGGGGATTTTGATGGCGATGGCGCTCTTAATCAGATGGAATTTTGTGTTCTTATGTTTAGATTAAGTCCTGAATTGATGGAAGCTTCTC

mRNA sequence

ATGACTCCCAAGAACCAAATCCCCCAATCGGAATCTGGGTTCCAAGATTGGCTGCCCGTCATGGCTGGAAACCTCGGCGGCGAGGGGCTGATCGGAGAGCTCTGTAATGGGTTCAATCTGCTGATGGATAGAGAGAAGGGAGTGATCAATTTCGAGAGCTTGAAGAGGAATGCGGCGGCTTTAGGGCTCGGGGATTTGAGTGATGATGAACTCCGAGGAATGTTGCGGGAAGGGGATTTTGATGGCGATGGCGCTCTTAATCAGATGGAATTTTGTGTTCTTATGTTTAGATTAAGTCCTGAATTGATGGAAGCTTCTC

Coding sequence (CDS)

ATGACTCCCAAGAACCAAATCCCCCAATCGGAATCTGGGTTCCAAGATTGGCTGCCCGTCATGGCTGGAAACCTCGGCGGCGAGGGGCTGATCGGAGAGCTCTGTAATGGGTTCAATCTGCTGATGGATAGAGAGAAGGGAGTGATCAATTTCGAGAGCTTGAAGAGGAATGCGGCGGCTTTAGGGCTCGGGGATTTGAGTGATGATGAACTCCGAGGAATGTTGCGGGAAGGGGATTTTGATGGCGATGGCGCTCTTAATCAGATGGAATTTTGTGTTCTTATGTTTAGATTAAGTCCTGAATTGATGGAAGCTTCTC

Protein sequence

MTPKNQIPQSESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDDELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEASX

Homology

[Close]

BLAST of Cucsa.059610 vs. Swiss-Prot
Match: PBP1_ARATH (Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-35
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 1


Query: 4   KNQIPQSESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAA-LG 63
           +NQ PQ    FQD+ P MAG LGGEGLI E+C GF LLMD++KGVI FESL+RNA+  LG
Sbjct: 13  ENQEPQ----FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLG 72

Query: 64  LGDLSDDELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           LGDL+DD++R M+ EGDFD DGALNQMEFCVLMFRLSPELMEAS
Sbjct: 73  LGDLTDDDVRYMINEGDFDRDGALNQMEFCVLMFRLSPELMEAS 112

[Close]

BLAST of Cucsa.059610 vs. Swiss-Prot
Match: KIC_ARATH (Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-24
Identity = 53/94 (56.38%), Postives = 70/94 (74.47%), Query Frame = 1


Query: 11  ESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDDE 70
           E+ ++D LPVMA  +  E  + ELC GF+LL D E+ +I  ESL+RN+  LG+  +S ++
Sbjct: 19  ETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKED 78

Query: 71  LRGMLREGDFDGDGALNQMEFCVLMFRLSPELME 105
            +GM+REGD DGDGALNQ EFCVLM RLSPE+ME
Sbjct: 79  AQGMVREGDLDGDGALNQTEFCVLMVRLSPEMME 112

[Close]

BLAST of Cucsa.059610 vs. Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-09
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 14  FQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDDELRG 73
           F D+L VM   +  +    E+   F L  D E G I+F++LKR A  LG  +LSD+EL+ 
Sbjct: 86  FSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELG-ENLSDEELQE 145

Query: 74  MLREGDFDGDGALNQMEFCVLMFRLS 100
           M+ E D DGDG +N+ EF  +M + S
Sbjct: 146 MIDEADRDGDGEVNEQEFLRIMKKTS 170

[Close]

BLAST of Cucsa.059610 vs. Swiss-Prot
Match: CETN2_MOUSE (Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.8e-09
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 14  FQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDDELRG 73
           F D+L VM   +  +    E+   F L  D E G I+F++LKR A  LG  +L+D+EL+ 
Sbjct: 86  FSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELG-ENLTDEELQE 145

Query: 74  MLREGDFDGDGALNQMEFCVLMFRLS 100
           M+ E D DGDG +N+ EF  +M + S
Sbjct: 146 MIDEADRDGDGEVNEQEFLRIMKKTS 170

[Close]

BLAST of Cucsa.059610 vs. Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-08
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 14  FQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDDELRG 73
           F D+L VM   +  +    E+   F L  D E G I+F++LKR A  LG  +L+D+EL+ 
Sbjct: 86  FNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELG-ENLTDEELQE 145

Query: 74  MLREGDFDGDGALNQMEFCVLMFRLS 100
           M+ E D DGDG +N+ EF  +M + S
Sbjct: 146 MIDEADRDGDGEVNEEEFLRIMKKTS 170

[Close]

BLAST of Cucsa.059610 vs. TrEMBL
Match: A0A0A0L2H0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G081900 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.2e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MTPKNQIPQSESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAA 60
           MTPKNQIPQSESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAA
Sbjct: 1   MTPKNQIPQSESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAA 60

Query: 61  LGLGDLSDDELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           LGLGDLSDDELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS
Sbjct: 61  LGLGDLSDDELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 106

[Close]

BLAST of Cucsa.059610 vs. TrEMBL
Match: A0A0A0L347_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099590 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-41
Identity = 85/96 (88.54%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 11  ESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDDE 70
           +SGF+DWLP MA  LGGEGLIGELCNGFNLLM+REKGVI+FESLKRNAAALGLGDLSD++
Sbjct: 7   KSGFEDWLPTMAERLGGEGLIGELCNGFNLLMNREKGVIDFESLKRNAAALGLGDLSDED 66

Query: 71  LRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           LR MLREGDFDGDGALNQMEFCVLMFRLSPELME S
Sbjct: 67  LRSMLREGDFDGDGALNQMEFCVLMFRLSPELMEES 102

[Close]

BLAST of Cucsa.059610 vs. TrEMBL
Match: A0A0D2NJQ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G078700 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-38
Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 10  SESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDD 69
           S SGFQD+LPVMA  LGG+GLIGELCNGFNLLMDREKGVI F+SLK+N+A LGL DL+DD
Sbjct: 13  SSSGFQDFLPVMADKLGGDGLIGELCNGFNLLMDREKGVITFDSLKKNSALLGLQDLTDD 72

Query: 70  ELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           +L+ M+ EGDFDGDGALNQMEFCVLMFRLSPELMEAS
Sbjct: 73  DLKCMMEEGDFDGDGALNQMEFCVLMFRLSPELMEAS 109

[Close]

BLAST of Cucsa.059610 vs. TrEMBL
Match: A0A0D2VEP2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G165400 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.5e-38
Identity = 78/95 (82.11%), Postives = 88/95 (92.63%), Query Frame = 1


Query: 12  SGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDDEL 71
           SGF+D+LP+MA  LGGEGLIGELCNGFNLLMD EKGVI F+SLK+N+A LGL DLSDD+L
Sbjct: 14  SGFEDFLPIMANKLGGEGLIGELCNGFNLLMDSEKGVITFDSLKKNSALLGLQDLSDDDL 73

Query: 72  RGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           R M++EGDFDGDGALNQM+FCVLMFRLSPELMEAS
Sbjct: 74  RCMVKEGDFDGDGALNQMDFCVLMFRLSPELMEAS 108

[Close]

BLAST of Cucsa.059610 vs. TrEMBL
Match: A0A061F769_THECC (Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_031234 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.6e-37
Identity = 77/97 (79.38%), Postives = 88/97 (90.72%), Query Frame = 1


Query: 10  SESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDD 69
           S S FQD+LPVMA  LGG+GLIGELCNGFNLLMD +KGVI F+SLK+N+A LGL +L+DD
Sbjct: 13  SSSDFQDFLPVMANKLGGDGLIGELCNGFNLLMDSDKGVITFDSLKKNSALLGLQELTDD 72

Query: 70  ELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           +LR M++EGDFDGDGALNQMEFCVLMFRLSPELMEAS
Sbjct: 73  DLRSMMKEGDFDGDGALNQMEFCVLMFRLSPELMEAS 109

[Close]

BLAST of Cucsa.059610 vs. TAIR10
Match: AT4G27280.1 (AT4G27280.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 161.0 bits (406), Expect = 4.1e-40
Identity = 82/105 (78.10%), Postives = 91/105 (86.67%), Query Frame = 1


Query: 3   PKNQIPQSESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAA-L 62
           P  Q PQ    F D+LP MAGNLGGEGLIGELCNGF LLMDREKGVI FESL+RNAAA L
Sbjct: 10  PTQQNPQPN--FHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVL 69

Query: 63  GLGDLSDDELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           GLGDL+D+++R M++EGDFD DGALNQMEFCVLMFRLSP+LMEAS
Sbjct: 70  GLGDLTDEDVRCMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEAS 112

[Close]

BLAST of Cucsa.059610 vs. TAIR10
Match: AT5G54490.1 (AT5G54490.1 pinoid-binding protein 1)

HSP 1 Score: 150.2 bits (378), Expect = 7.2e-37
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 1


Query: 4   KNQIPQSESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAA-LG 63
           +NQ PQ    FQD+ P MAG LGGEGLI E+C GF LLMD++KGVI FESL+RNA+  LG
Sbjct: 13  ENQEPQ----FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLG 72

Query: 64  LGDLSDDELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           LGDL+DD++R M+ EGDFD DGALNQMEFCVLMFRLSPELMEAS
Sbjct: 73  LGDLTDDDVRYMINEGDFDRDGALNQMEFCVLMFRLSPELMEAS 112

[Close]

BLAST of Cucsa.059610 vs. TAIR10
Match: AT2G46600.1 (AT2G46600.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-25
Identity = 53/94 (56.38%), Postives = 70/94 (74.47%), Query Frame = 1


Query: 11  ESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDDE 70
           E+ ++D LPVMA  +  E  + ELC GF+LL D E+ +I  ESL+RN+  LG+  +S ++
Sbjct: 19  ETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKED 78

Query: 71  LRGMLREGDFDGDGALNQMEFCVLMFRLSPELME 105
            +GM+REGD DGDGALNQ EFCVLM RLSPE+ME
Sbjct: 79  AQGMVREGDLDGDGALNQTEFCVLMVRLSPEMME 112

[Close]

BLAST of Cucsa.059610 vs. NCBI nr
Match: gi|449470409|ref|XP_004152909.1| (PREDICTED: calcium-binding protein PBP1 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.0e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MTPKNQIPQSESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAA 60
           MTPKNQIPQSESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAA
Sbjct: 1   MTPKNQIPQSESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAA 60

Query: 61  LGLGDLSDDELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           LGLGDLSDDELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS
Sbjct: 61  LGLGDLSDDELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 106

[Close]

BLAST of Cucsa.059610 vs. NCBI nr
Match: gi|659126968|ref|XP_008463452.1| (PREDICTED: calcium-binding protein PBP1-like [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 100/106 (94.34%), Postives = 101/106 (95.28%), Query Frame = 1


Query: 1   MTPKNQIPQSESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAA 60
           MT  N IPQSESGFQDWLPVMAG LGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAA
Sbjct: 1   MTSNNHIPQSESGFQDWLPVMAGKLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAA 60

Query: 61  LGLGDLSDDELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           LGLGDLSDDELRGMLREGD +GDGALNQMEFCVLMFRLSPELMEAS
Sbjct: 61  LGLGDLSDDELRGMLREGDLNGDGALNQMEFCVLMFRLSPELMEAS 106

[Close]

BLAST of Cucsa.059610 vs. NCBI nr
Match: gi|449463164|ref|XP_004149304.1| (PREDICTED: calcium-binding protein PBP1 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-41
Identity = 85/96 (88.54%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 11  ESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDDE 70
           +SGF+DWLP MA  LGGEGLIGELCNGFNLLM+REKGVI+FESLKRNAAALGLGDLSD++
Sbjct: 7   KSGFEDWLPTMAERLGGEGLIGELCNGFNLLMNREKGVIDFESLKRNAAALGLGDLSDED 66

Query: 71  LRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           LR MLREGDFDGDGALNQMEFCVLMFRLSPELME S
Sbjct: 67  LRSMLREGDFDGDGALNQMEFCVLMFRLSPELMEES 102

[Close]

BLAST of Cucsa.059610 vs. NCBI nr
Match: gi|659102784|ref|XP_008452312.1| (PREDICTED: calcium-binding protein PBP1 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 5.9e-41
Identity = 84/96 (87.50%), Postives = 90/96 (93.75%), Query Frame = 1


Query: 11  ESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDDE 70
           +SGF+DWLP MA  LGGEGLIGELCNGFNLLMDREKGVI+FESLKRNAAALGL DLSD++
Sbjct: 7   KSGFEDWLPTMAERLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLADLSDED 66

Query: 71  LRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           LR MLREGDFDGDGALNQMEFCVLMFRLSPELM+ S
Sbjct: 67  LRSMLREGDFDGDGALNQMEFCVLMFRLSPELMDES 102

[Close]

BLAST of Cucsa.059610 vs. NCBI nr
Match: gi|823131730|ref|XP_012459273.1| (PREDICTED: calcium-binding protein PBP1 [Gossypium raimondii])

HSP 1 Score: 166.4 bits (420), Expect = 2.7e-38
Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 10  SESGFQDWLPVMAGNLGGEGLIGELCNGFNLLMDREKGVINFESLKRNAAALGLGDLSDD 69
           S SGFQD+LPVMA  LGG+GLIGELCNGFNLLMDREKGVI F+SLK+N+A LGL DL+DD
Sbjct: 13  SSSGFQDFLPVMADKLGGDGLIGELCNGFNLLMDREKGVITFDSLKKNSALLGLQDLTDD 72

Query: 70  ELRGMLREGDFDGDGALNQMEFCVLMFRLSPELMEAS 107
           +L+ M+ EGDFDGDGALNQMEFCVLMFRLSPELMEAS
Sbjct: 73  DLKCMMEEGDFDGDGALNQMEFCVLMFRLSPELMEAS 109

The following BLAST results are available for this feature:

BLAST of Cucsa.059610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PBP1_ARATH	1.3e-35	73.08	Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1	[more]
KIC_ARATH	3.8e-24	56.38	Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2	[more]
CETN2_BOVIN	3.5e-09	41.86	Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1	[more]
CETN2_MOUSE	7.8e-09	40.70	Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1	[more]
CETN1_HUMAN	1.7e-08	40.70	Centrin-1 OS=Homo sapiens GN=CETN1 PE=1 SV=1	[more]

BLAST of Cucsa.059610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2H0_CUCSA	7.2e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G081900 PE=4 SV=1	[more]
A0A0A0L347_CUCSA	1.4e-41	88.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099590 PE=4 SV=1	[more]
A0A0D2NJQ7_GOSRA	1.9e-38	82.47	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G078700 PE=4 SV=1	[more]
A0A0D2VEP2_GOSRA	9.5e-38	82.11	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G165400 PE=4 SV=1	[more]
A0A061F769_THECC	3.6e-37	79.38	Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_031234 PE=4 SV=...	[more]

BLAST of Cucsa.059610 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27280.1	4.1e-40	78.10	Calcium-binding EF-hand family protein	[more]
AT5G54490.1	7.2e-37	73.08	pinoid-binding protein 1	[more]
AT2G46600.1	2.2e-25	56.38	Calcium-binding EF-hand family protein	[more]

BLAST of Cucsa.059610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470409\|ref\|XP_004152909.1\|	1.0e-53	100.00	PREDICTED: calcium-binding protein PBP1 [Cucumis sativus]	[more]
gi\|659126968\|ref\|XP_008463452.1\|	1.2e-49	94.34	PREDICTED: calcium-binding protein PBP1-like [Cucumis melo]	[more]
gi\|449463164\|ref\|XP_004149304.1\|	2.0e-41	88.54	PREDICTED: calcium-binding protein PBP1 [Cucumis sativus]	[more]
gi\|659102784\|ref\|XP_008452312.1\|	5.9e-41	87.50	PREDICTED: calcium-binding protein PBP1 [Cucumis melo]	[more]
gi\|823131730\|ref\|XP_012459273.1\|	2.7e-38	82.47	PREDICTED: calcium-binding protein PBP1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.059610.1	Cucsa.059610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13833	EF-hand_8	coord: 45..97 score: 1.1
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 66..101 score: 1
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 14..98 score: 1.3
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 32..98 score: 7.2
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 79..91 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 14..106 score: 1.3
None	No IPR available	PANTHER	PTHR10891:SF585	SUBFAMILY NOT NAMED	coord: 14..106 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.059610	Cla005258	Watermelon (97103) v1	cgywmB048
Cucsa.059610	Csa3G081900	Cucumber (Chinese Long) v2	cgycuB044
Cucsa.059610	ClCG10G005840	Watermelon (Charleston Gray)	cgywcgB049
Cucsa.059610	CSPI03G05450	Wild cucumber (PI 183967)	cgycpiB044
Cucsa.059610	CmaCh16G008410	Cucurbita maxima (Rimu)	cgycmaB0080
Cucsa.059610	CmoCh16G009210	Cucurbita moschata (Rifu)	cgycmoB0075
Cucsa.059610	Cp4.1LG00g00210	Cucurbita pepo (Zucchini)	cgycpeB0076
Cucsa.059610	MELO3C025433.2	Melon (DHL92) v3.6.1	cgymedB047
Cucsa.059610	CsaV3_3G005500	Cucumber (Chinese Long) v3	cgycucB046
Cucsa.059610	Cla97C10G190010	Watermelon (97103) v2	cgywmbB048
Cucsa.059610	Bhi11G000534	Wax gourd	cgywgoB049
Cucsa.059610	Carg24830	Silver-seed gourd	carcgyB0904

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.059610	Cucurbita maxima (Rimu)	cgycmaB0081
Cucsa.059610	Cucurbita moschata (Rifu)	cgycmoB0076
Cucsa.059610	Cucurbita pepo (Zucchini)	cgycpeB0077
Cucsa.059610	Bottle gourd (USVL1VR-Ls)	cgylsiB048
Cucsa.059610	Silver-seed gourd	carcgyB0738