Cucsa.057800 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.057800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transmembrane protein, putative
Location	scaffold00614 : 133149 .. 136197 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACCTTTCTACTTTCCTCTTCATAGCTGTGTAACGTCGACCACCTGAACTAAGAACCTAATGACCGGAGAAGAGGTTACTGGTCCGGCGGGCCCTAAGATTCTCCGTCTCCTCTATTTCGCCGGCGCCGGATGTAATTTCTTCCATTTTTCTCTTTTTATTTTCTCTCTTCCATTCTATTCATTAACCATTCCATTCGTTTATGTTGTTCAGTCATTGTCAGCTTCGCCATAAACAAGTGGCGGGAGATCGAGCGCAATTCTCTGTTGCAACAACAGCAGAAGCAGCGTTTGAATCATCAATTATCCGAATCTCCTAATGATGCTGTGCAGAAAGTCGTCGAATGATCTCAGGTTAGTTTGTTATATTCTACTATTTCTCAAGTTAGATCGCTATTGCGATGTTAGGATAATGATTTTGGATTCATAATTGATCATTCTGTGATTATAATTATGGTGTGAGATCTATTGCAACTCTGCTCATTTTCTGTAGCAATAATGGAAGGGGCAAACCCTTATGAGGATGTTGCTTTATCAACTATCACCTATAAGAAGAGAAAAGTGTAGTGATTACACTAGTTGAGTGCTAACATATTGAAAGTGCCATTGATGACTATGAGGGGGAAATCAAAGGAGCCTCTTTGAGATTAGAATTGTAAAGAAAAAGTGAGTGGGCCGTAACCAAAATAGAATGGATAATATTTAGATCTTTGACTTCTGTCTTATGCATTGTGATTTAGGTGTGCTACACGTGTTGTCTTTTGTGATACAAACTTACAGTAGACAACAAGGAGACACCGGTTTATTGAGGAAGAGAGTAAGCTCTTAGACGTACACACTGAGGCTGAATATTTCGTATATTAGGTTAAAGTGGTTATAAGATAGTTGTAAATAAAGACTAAAGACATTAATAATAAACCAAATACAAATCGTTAAAACAGAAAATAACAAGGGCTTAATTGATAATTTAGTCTAGCTAAGATCTTTACAGTATACCATGCATATTGGCACCTTGAATTGTGGGATTCTGGCCCTTGTACAGAATGGTTTGTATAAGGGCAGGGCAGCATGATTGGCATGTTCTTTTATGCAGAGCAAAATGGGCTAGAACTCGTAGTGTGTTTCTCTCCATTCTGTTCTTGATTTCTGCCTTTGCCATACTGGGGATGAGCCGAAGAGGATATTATTTGAAAGAAGAAAAAGAATAGTTGAAGTAATTAACATGAGAATACAATGGAAGTTATTGACTTTCTGGCTGGTAAATAAGGGATTTTGCTTTTGTGTAAGAGATGAGGCAAGTGTTAGACTTCTAGTTCATTCATTTGATGTATACCCCCTGCAATTAAAATACCGCATTGTCTCATAACAAAAGAATGTGTAGTTGACTTTTTTAGTGGCTATCCTGCCCATTTTTTCTAATAAGTTCCTTCAATTTTAAGATAATGCTTTCCTTTTCCACAAGCCAAGATTTCTAATAAGTGAGGCCTTAAGCATTTTCGTAGACTTTGTTGTGATAGCAACTAAAGTTTGTATAATGAAAGACTAGCCTATCCAAATCACTGTTCTAGAATATTTTATACTTCACCAAAACATCCTTCTAGGCACATCTGCATTAATATGTCCTTTTCAATCCGAAAGGTGTCATGATAATTATTCTTGTAATGAAAGCTTTAATGCTTTTGCACTTGACATGGATGTTTTCTGGTGATGGTCATTATATGGTCGTTTGGTTTATATTTTATTATGATTCATTTTTTAGTGAAGGAATTGTTGTTATACTCTCTGTAAATTTCATCATTAATATAATTTCATTTCTTTAACATAAATGAAAGTGAAGGTATTTCAGAACCTACAAAGGACAATTAACGTGATCTTCTCCTGGTTTATGTTTTtAAATTTGTAGACTTAATCCTTAATCCTTAATCCAAGTCCCTTGTTTACATGTCAGGGGTGGCCGCTCAAGGATCTTAAGATGCTTTCAGCTCAACAGTTAAGTCCCTCATTTACCACCAGATTTCTTGTTATAGTCAAGAGTACATGTAGGATTATCTATGTTTTTTTTTtAAACAGAAACAAACTTCTTTATTAATAATAAGAACTCAAAATACAAGAGAATTATACAATGAGAGGATTATCTATGTCTTTTAGCTATTATGCTGCTGGGTAGATTTTAGCCAATAATACCCAGAAAATGTTGCCTCTGTCAATAGTACTATTTCTTCCTTTCATTCCTTATCCAGCCATCTCTGTCTCTGATCTCTTTTATATGTACAAGTTCATCATGCTCTGAAGGAAACACCATTTTCAACTTGTCCTGCCAAAGCGTAACTAGAATAAATTTCTACTTTTTTTACTTGTTGGCCAATTTTGAAGTTCACTTTTAATT

mRNA sequence

GACCTTTCTACTTTCCTCTTCATAGCTGTGTAACGTCGACCACCTGAACTAAGAACCTAATGACCGGAGAAGAGGTTACTGGTCCGGCGGGCCCTAAGATTCTCCGTCTCCTCTATTTCGCCGGCGCCGGATTCATTGTCAGCTTCGCCATAAACAAGTGGCGGGAGATCGAGCGCAATTCTCTGTTGCAACAACAGCAGAAGCAGCGTTTGAATCATCAATTATCCGAATCTCCTAATGATGCTGTGCAGAAAGTCGTCGAATGATCTCAGGGGTGGCCGCTCAAGGATCTTAAGATGCTTTCAGCTCAACAGTTAAGTCCCTCATTTACCACCAGATTTCTTGTTATAGTCAAGAGTACATGTAGGATTATCTATGttttttttttaaacagaaacaaacttctttattaataataagaactcaaaatacaagagaattatacaatgagagGATTATCTATGTCTTTTAGCTATTATGCTGCTGGGTAGATTTTAGCCAATAATACCCAGAAAATGTTGCCTCTGTCAATAGTACTATTTCTTCCTTTCATTCCTTATCCAGCCATCTCTGTCTCTGATCTCTTTTATATGTACAAGTTCATCATGCTCTGAAGGAAACACCATTTTCAACTTGTCCTGCCAAAGCGTAACTAGAATAAATTTCTACTTTTTTTACTTGTTGGCCAATTTTGAAGTTCACTTTTAATT

Coding sequence (CDS)

ATGACCGGAGAAGAGGTTACTGGTCCGGCGGGCCCTAAGATTCTCCGTCTCCTCTATTTCGCCGGCGCCGGATTCATTGTCAGCTTCGCCATAAACAAGTGGCGGGAGATCGAGCGCAATTCTCTGTTGCAACAACAGCAGAAGCAGCGTTTGAATCATCAATTATCCGAATCTCCTAATGATGCTGTGCAGAAAGTCGTCGAATGA

Protein sequence

MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPNDAVQKVVE*

Homology

[Close]

BLAST of Cucsa.057800 vs. TrEMBL
Match: A0A0A0L208_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625040 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 6.1e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60
          MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of Cucsa.057800 vs. TrEMBL
Match: A0A090ITT6_CUCSA (Uncharacterized protein OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60
          MTG+EVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of Cucsa.057800 vs. TrEMBL
Match: A0A059BUR7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03276 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.8e-13
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60
          MTGEE++GPAGPK +RLLYF GAGFI   AINKWRE+ER SL  QQQ+  L  Q    P 
Sbjct: 1  MTGEEISGPAGPKAIRLLYFVGAGFICVAAINKWRELERKSL--QQQQHGLKEQSPHDPA 60

Query: 61 DAVQKVVE 69
          +AV K ++
Sbjct: 61 NAVPKAID 66

[Close]

BLAST of Cucsa.057800 vs. TrEMBL
Match: A0A0S3SIG9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G143400 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-12
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1


Query: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRL---NHQLSE 59
          MTGEEV+GPAGPK++RL++F GAG I + AINKWRE ERN+++QQQQ+Q+     H  SE
Sbjct: 1  MTGEEVSGPAGPKLIRLVFFIGAGVICTTAINKWREYERNTIIQQQQQQQRVVETHNSSE 60

[Close]

BLAST of Cucsa.057800 vs. TrEMBL
Match: A0A0L9TEH4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan585s000800 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-12
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1


Query: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRL---NHQLSE 59
          MTGEEV+GPAGPK++RL++F GAG I + AINKWRE ERN+++QQQQ+Q+     H  SE
Sbjct: 1  MTGEEVSGPAGPKLIRLVFFIGAGVICTTAINKWREYERNTIIQQQQQQQRVVETHNSSE 60

[Close]

BLAST of Cucsa.057800 vs. TAIR10
Match: AT1G16916.1 (AT1G16916.1 unknown protein)

HSP 1 Score: 76.3 bits (186), Expect = 8.5e-15
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1


Query: 8  GPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPNDAVQKVV 67
          GP  PK+LR++YF GAGF+ +FAINKWRE+ERNSLL+Q+Q++     +   P D+VQK +
Sbjct: 5  GPPAPKMLRMVYFVGAGFLCTFAINKWREMERNSLLKQEQEKNQQGDVGLLPRDSVQKAM 64

Query: 68 E 69
          +
Sbjct: 65 K 65

[Close]

BLAST of Cucsa.057800 vs. NCBI nr
Match: gi|778695678|ref|XP_011654034.1| (PREDICTED: uncharacterized protein LOC105435291 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 8.8e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60
          MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of Cucsa.057800 vs. NCBI nr
Match: gi|678241533|emb|CED89884.1| (uncharacterized protein [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60
          MTG+EVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of Cucsa.057800 vs. NCBI nr
Match: gi|659127553|ref|XP_008463762.1| (PREDICTED: uncharacterized protein LOC103501828 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 4.1e-27
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60
          MTGEEVTGPAGPKILRLLYFAGAGFI SFAINKWREIERNSLLQQ QKQRLNHQLSES N
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFICSFAINKWREIERNSLLQQHQKQRLNHQLSESRN 60

Query: 61 DAVQKVVE 69
          D VQKVVE
Sbjct: 61 DTVQKVVE 68

[Close]

BLAST of Cucsa.057800 vs. NCBI nr
Match: gi|951055637|ref|XP_014521537.1| (PREDICTED: uncharacterized protein LOC106778136 [Vigna radiata var. radiata])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-13
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRL--NHQLSES 59
          MTGEEV+GPAGPK++RL++F GAG I + AINKWRE ERN+++QQQQ+QR+   H  SES
Sbjct: 1  MTGEEVSGPAGPKLIRLVFFIGAGVICTTAINKWREYERNTIIQQQQQQRVVETHNSSES 60

[Close]

BLAST of Cucsa.057800 vs. NCBI nr
Match: gi|702377501|ref|XP_010062826.1| (PREDICTED: uncharacterized protein LOC104450096 [Eucalyptus grandis])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-13
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60
          MTGEE++GPAGPK +RLLYF GAGFI   AINKWRE+ER SL  QQQ+  L  Q    P 
Sbjct: 1  MTGEEISGPAGPKAIRLLYFVGAGFICVAAINKWRELERKSL--QQQQHGLKEQSPHDPA 60

Query: 61 DAVQKVVE 69
          +AV K ++
Sbjct: 61 NAVPKAID 66

The following BLAST results are available for this feature:

BLAST of Cucsa.057800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L208_CUCSA	6.1e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625040 PE=4 SV=1	[more]
A0A090ITT6_CUCSA	1.8e-29	98.53	Uncharacterized protein OS=Cucumis sativus PE=2 SV=1	[more]
A0A059BUR7_EUCGR	1.8e-13	60.29	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03276 PE=4 SV=1	[more]
A0A0S3SIG9_PHAAN	1.5e-12	62.30	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G143400 PE=...	[more]
A0A0L9TEH4_PHAAN	1.5e-12	62.30	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan585s000800 PE=4 SV=1	[more]

BLAST of Cucsa.057800 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16916.1	8.5e-15	54.10	unknown protein	[more]

BLAST of Cucsa.057800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695678\|ref\|XP_011654034.1\|	8.8e-30	100.00	PREDICTED: uncharacterized protein LOC105435291 [Cucumis sativus]	[more]
gi\|678241533\|emb\|CED89884.1\|	2.6e-29	98.53	uncharacterized protein [Cucumis sativus]	[more]
gi\|659127553\|ref\|XP_008463762.1\|	4.1e-27	94.12	PREDICTED: uncharacterized protein LOC103501828 [Cucumis melo]	[more]
gi\|951055637\|ref\|XP_014521537.1\|	2.6e-13	65.00	PREDICTED: uncharacterized protein LOC106778136 [Vigna radiata var. radiata]	[more]
gi\|702377501\|ref\|XP_010062826.1\|	2.6e-13	60.29	PREDICTED: uncharacterized protein LOC104450096 [Eucalyptus grandis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.057800.1	Cucsa.057800.1	mRNA
Cucsa.057800.2	Cucsa.057800.2	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.057800	Cla023318	Watermelon (97103) v1	cgywmB047
Cucsa.057800	Csa4G625040	Cucumber (Chinese Long) v2	cgycuB042
Cucsa.057800	MELO3C025654	Melon (DHL92) v3.5.1	cgymeB042
Cucsa.057800	ClCG11G017320	Watermelon (Charleston Gray)	cgywcgB047
Cucsa.057800	CSPI04G22710	Wild cucumber (PI 183967)	cgycpiB043
Cucsa.057800	CmaCh01G012550	Cucurbita maxima (Rimu)	cgycmaB0078
Cucsa.057800	CmoCh01G013110	Cucurbita moschata (Rifu)	cgycmoB0073
Cucsa.057800	Lsi04G019960	Bottle gourd (USVL1VR-Ls)	cgylsiB047
Cucsa.057800	Cp4.1LG02g02000	Cucurbita pepo (Zucchini)	cgycpeB0073
Cucsa.057800	MELO3C025654.2	Melon (DHL92) v3.6.1	cgymedB042
Cucsa.057800	CsaV3_4G032950	Cucumber (Chinese Long) v3	cgycucB045
Cucsa.057800	Cla97C11G223410	Watermelon (97103) v2	cgywmbB046
Cucsa.057800	Bhi09G002886	Wax gourd	cgywgoB048
Cucsa.057800	Carg14742	Silver-seed gourd	carcgyB0363

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.057800	Cucurbita maxima (Rimu)	cgycmaB0076
Cucsa.057800	Cucurbita moschata (Rifu)	cgycmoB0071
Cucsa.057800	Cucumber (Chinese Long) v2	cgycuB043
Cucsa.057800	Cucurbita pepo (Zucchini)	cgycpeB0074
Cucsa.057800	Silver-seed gourd	carcgyB0705