Carg14742 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14742
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein, putative
Location	Cucurbita_argyrosperma_scaffold_048 : 744079 .. 746972 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACGACGTTTTTATTTCCCCTAATTTTGCGAAGGTGAAGAAAATCTGAAATTTTGACTTTTTCTAGAACCCTGGGTTAGGGCAACGAGACGACGGTGACGGCCTGAAGGAAGAAGCTAATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGTCCTAAGGTTCTACGTCTGCTCTATTTCGTTGGTGCTGGATGTAAATTTCTTCGATTCACCTCTTTTTCTTCTCTGTTTTAAATTTTGATTGTTTCGATTTATTAATTGTTCTATTCGATTATGTTTTGTAGTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCGCAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAATCTCCTAATGATGCGGTACAGAAAGTCGTTAAGTGAACTTAGGTTCGTTTGTTATTTTCAGAAATTTCGCTTGTATTACCAACAGGATATTGGATTTTTTTTTTCTTTCTATTTAGGACAATAATGTTGGATGGATGATAGATTTTTCTGTGATTATAATTATGCTGTGAGGTTTCTTCCTTCTCTACGAATCGGAGTTCTTCTCCCTTTCTATAGCAATAATGGAAGGGACAAACACTTCTGGAATGCAGCTTTATCAATTATCACCTTTAAGAAGAGAAAGTGTAATGACTACAATAATTGAGTGCAATTGTTTCCTGAAAATGAAAGGAGGGGCGAGGGGGCGGTGGAAATTCTTTCGAATTAAAGTTTCAGAATGGAAATGTCATTGATGACTTTGCGGAGAAAAAGAAAGAAAAAAAAAAGACAATGGAACTTCTTGGAGATTAGAATTGTGACGTCTGCCGGAACCAAAATAAGTTGGATAGAAGTTGTTCCTTCGGATTATGTAATGCCATATTCACTGCTGGTTTATGTATTGTGATTGATGCTGGATTCATCTGTTGTCTTTAAAATATACCATACATTTTGGCACCTTAGTTTGTGGGATTCTGGCCCTTATATAGAGTGGTTTGAGCTTGTGTTAGTAGTTATCTTATGAAGAAATGATGTTGTAACTATGCGAGGCAGCTTGATTGTGAGATCCCACTTCGGTTGGGGAGGAGAACGAAACATTCTTTAAAAGGGTGTGGAAACCTCTCTCTAGGAGATGCTTTTTAAAACCTTGAGGGAAATATCTGCTAGCGGTGGTCTTAGGCCGTTACATTGATAATCTTGTTCTTTTTTCAGACTCAGCTATTACTAGTAGTTAGTTTTTCTCTGTCTTGTTCTTAATTTCTTGCTTCATCATATTCAGGATGAGCCAACAGGGATGCTATTTGAAAATTTGAAATAAAGAAGTGGAAGTAATTACTTAAGAATACAACAGAAGTTATTGACTTTCTGGCATGAGGGATTTTTCTTTTGTGTATGAGATATGTCTACTTTTGGAGTTCTAGTTCATTCATTTGATGTGTACCCCTTGGATTCAGTTACTGTATAGTTGACTTTTGTGGGTGGCTATTCTGCCTCGTGGTCTTAATAATTTCTTTCAATTTTGGGATAACGTTTTCCACAAGCTAAGGTTTCTAATGAACTTTAAAAGTAAGGCCTTGAGCATCTTCGTAGACTTTGTGAATTTGAGATAGCAACTAAAGTTTGTACAGTGAAAGACTAGCTTATCCAAATTACTGTTCGAGAATATTTTATACTTCACCAAAACATCCATCTGGGCATACATCTGTGTTAGTATGTCCTTTTCAACTTGAAAAATGTAATAATTATTCTTGTAATCAAGGCTTTATTGCTTGTGTGCATGATATGGTTATCTTTTGGTGACTGTCATTTTATGGTCGTTTGTCAGTTCCCAAAACTTTATCTGCAAGAAACCATTGGAGTTGTATAATTATTTTAGTTCTTCATTGTTTGTGGATGAATTATTATTGTGCTACTCCCTGTAAATTTTTTTTTTAACATAATATCATTTCTGTAAAACAAAAGAAAAGGAAGGTAGTTAATGTGATGTTTTGCTGTTTTATGTTTTAAGTATGTAGTTTTAATACTTAATTCAAGTCCCTTATGCATGGTGTCACAATCGCACTTTTCATGGCTGCAGACGTTGCGATCGCAAGCATGACCGTGACACATTGCAGGGCTGATAATCAAGGATCTTAAGATGCTTCCGGTTCCAGTTCAACAGCTAAGTCCGTCATTTTCAACAAGATTTCTTGTTCTTGATAAAAGTATGCTAGGATTATCTATGCTTTTTAACTGTGACGCTGGGTAGATTTGAGCCATTACCAAACAAATGATGCATCTTTTAGTAGTACTGTGTCTTCCTTCGTCCTGGATCAAGCCATCTCTCTGTTTCTAATCTCCACTATATGTACAAGTCCATTATGGTCTGAAAGAAACAGCATTTTTAAAACTAGTACTATCATAGGGTAACTAAAGTAAATTTCTCCTCTTCCACCTGTTGGTCAATTCCGAAGTTCAATTCCTGATTATTTATGTTAGCATAGGAGCTGATTGCATTTCTTAATCATTCAATCTATAGAGATGGGAAAATATAACTTTGGGCTGGTTTAGAATTCCAATTCAAACACTTGTTTAGATGGTTAAATGTGAATGTTTCTAGTGTTGTTTCTGATGAGTTCCTTGACTTAGAAGACAAACTTCACATGTGCTTAAAAAGCAGTAAAAGAACATGTAGTTCTGAATGGCAACTTAGTATTTGTTTATTACAATTCTAGAAAGTTTCTTCAAAAGATGTCCTCTATTGAACTTGCATAGAGTGATTAATGTAAGTTCACTTTTGTCATCTTAGGCAAATTTGAACATTGCTATTGAAGTAATGAAAGAGAAACTTAGAGTTGGGCCTCTAATCAAAAGAATGAAAGAGAAACTTAGGTTG

mRNA sequence

AAAACGACGTTTTTATTTCCCCTAATTTTGCGAAGGTGAAGAAAATCTGAAATTTTGACTTTTTCTAGAACCCTGGGTTAGGGCAACGAGACGACGGTGACGGCCTGAAGGAAGAAGCTAATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGTCCTAAGGTTCTACGTCTGCTCTATTTCGTTGGTGCTGGATTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCGCAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAATCTCCTAATGATGCGGTACAGAAAGTCGTTAAGTGAACTTAGACGTTGCGATCGCAAGCATGACCGTGACACATTGCAGGGCTGATAATCAAGGATCTTAAGATGCTTCCGGTTCCAGTTCAACAGCTAAGTCCGTCATTTTCAACAAGATTTCTTGTTCTTGATAAAAGTATGCTAGGATTATCTATGCTTTTTAACTGTGACGCTGGGTAGATTTGAGCCATTACCAAACAAATGATGCATCTTTTAGTAGTACTGTGTCTTCCTTCGTCCTGGATCAAGCCATCTCTCTGTTTCTAATCTCCACTATATGTACAAGTCCATTATGGTCTGAAAGAAACAGCATTTTTAAAACTAGTACTATCATAGGGTAACTAAAGTAAATTTCTCCTCTTCCACCTGTTGGTCAATTCCGAAGTTCAATTCCTGATTATTTATGTTAGCATAGGAGCTGATTGCATTTCTTAATCATTCAATCTATAGAGATGGGAAAATATAACTTTGGGCTGGTTTAGAATTCCAATTCAAACACTTGTTTAGATGGTTAAATGTGAATGTTTCTAGTGTTGTTTCTGATGAGTTCCTTGACTTAGAAGACAAACTTCACATGTGCTTAAAAAGCAGTAAAAGAACATGTAGTTCTGAATGGCAACTTAGTATTTGTTTATTACAATTCTAGAAAGTTTCTTCAAAAGATGTCCTCTATTGAACTTGCATAGAGTGATTAATGTAAGTTCACTTTTGTCATCTTAGGCAAATTTGAACATTGCTATTGAAGTAATGAAAGAGAAACTTAGAGTTGGGCCTCTAATCAAAAGAATGAAAGAGAAACTTAGGTTG

Coding sequence (CDS)

ATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGTCCTAAGGTTCTACGTCTGCTCTATTTCGTTGGTGCTGGATTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCGCAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAATCTCCTAATGATGCGGTACAGAAAGTCGTTAAGTGA

Protein sequence

MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPNDAVQKVVK

Homology

[Close]

BLAST of Carg14742 vs. NCBI nr
Match: XP_022941532.1 (uncharacterized protein LOC111446806 [Cucurbita moschata])

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIE KSLLQQRQKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]

BLAST of Carg14742 vs. NCBI nr
Match: XP_023522224.1 (uncharacterized protein LOC111786101 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 2.4e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIERKSLLQQ+QKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIERKSLLQQQQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]

BLAST of Carg14742 vs. NCBI nr
Match: XP_022982102.1 (uncharacterized protein LOC111481043 [Cucurbita maxima])

HSP 1 Score: 132.1 bits (331), Expect = 7.1e-28
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIE KSLLQQRQKQRLDHQFAE+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]

BLAST of Carg14742 vs. NCBI nr
Match: XP_023522217.1 (uncharacterized protein LOC111786101 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.6 bits (309), Expect = 2.5e-25
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIERKSLLQQ+QKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIERKSLLQQQQKQRLDHQFAESPN 60

Query: 61 DA 63
          DA
Sbjct: 61 DA 62

[Close]

BLAST of Carg14742 vs. NCBI nr
Match: XP_011654034.1 (PREDICTED: uncharacterized protein LOC105435291 [Cucumis sativus] >KGN55049.1 hypothetical protein Csa_4G625040 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 9.0e-23
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEV GPAGPK+LRLLYF GAGF+ + A+NKWREIER SLLQQ+QKQRL+HQ +ESPN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of Carg14742 vs. TAIR10
Match: AT1G16916.1 (unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 4.6e-13
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 8  GPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPNDAVQKVV 67
          GP  PK+LR++YFVGAGF+ T A+NKWRE+ER SLL+Q Q++         P D+VQK +
Sbjct: 5  GPPAPKMLRMVYFVGAGFLCTFAINKWREMERNSLLKQEQEKNQQGDVGLLPRDSVQKAM 64

Query: 68 K 69
          K
Sbjct: 65 K 65

[Close]

BLAST of Carg14742 vs. TrEMBL
Match: tr|A0A0A0L208|A0A0A0L208_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.9e-23
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEV GPAGPK+LRLLYF GAGF+ + A+NKWREIER SLLQQ+QKQRL+HQ +ESPN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of Carg14742 vs. TrEMBL
Match: tr|A0A090ITT6|A0A090ITT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-22
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTG+EV GPAGPK+LRLLYF GAGF+ + A+NKWREIER SLLQQ+QKQRL+HQ +ESPN
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of Carg14742 vs. TrEMBL
Match: tr|A0A1S3CKG5|A0A1S3CKG5_CUCME (uncharacterized protein LOC103501828 OS=Cucumis melo OX=3656 GN=LOC103501828 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-21
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEV GPAGPK+LRLLYF GAGF+ + A+NKWREIER SLLQQ QKQRL+HQ +ES N
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFICSFAINKWREIERNSLLQQHQKQRLNHQLSESRN 60

Query: 61 DAVQKVVK 69
          D VQKVV+
Sbjct: 61 DTVQKVVE 68

[Close]

BLAST of Carg14742 vs. TrEMBL
Match: tr|A0A1Q3AYA9|A0A1Q3AYA9_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_04238 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEE AGP GPKVLRLLYFVGAGF+ T A+NKWRE+ERKSLLQ++       Q + +P 
Sbjct: 1  MTGEEPAGPPGPKVLRLLYFVGAGFICTAAINKWRELERKSLLQKQ-------QLSNNPP 60

Query: 61 DAVQKVVK 69
            VQKVV+
Sbjct: 61 STVQKVVE 61

[Close]

BLAST of Carg14742 vs. TrEMBL
Match: tr|A0A2I4GZ95|A0A2I4GZ95_9ROSI (uncharacterized protein LOC109012164 OS=Juglans regia OX=51240 GN=LOC109012164 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.9e-14
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPA PKVLRLLYFVGAGF+ T A+NKWR++ERK++LQ++Q     +Q  E   
Sbjct: 1  MTGEEVAGPAAPKVLRLLYFVGAGFICTAAINKWRQLERKAMLQKQQ----GNQLPEDSA 60

Query: 61 DAVQKVV 68
          +AVQK V
Sbjct: 61 NAVQKAV 63

The following BLAST results are available for this feature:

BLAST of Carg14742 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941532.1	1.1e-28	98.53	uncharacterized protein LOC111446806 [Cucurbita moschata]	[more]
XP_023522224.1	2.4e-28	97.06	uncharacterized protein LOC111786101 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022982102.1	7.1e-28	95.59	uncharacterized protein LOC111481043 [Cucurbita maxima]	[more]
XP_023522217.1	2.5e-25	96.77	uncharacterized protein LOC111786101 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_011654034.1	9.0e-23	79.41	PREDICTED: uncharacterized protein LOC105435291 [Cucumis sativus] >KGN55049.1 hy...	[more]

BLAST of Carg14742 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16916.1	4.6e-13	54.10	unknown protein	[more]

BLAST of Carg14742 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14742 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L208\|A0A0A0L208_CUCSA	5.9e-23	79.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1	[more]
tr\|A0A090ITT6\|A0A090ITT6_CUCSA	1.7e-22	77.94	Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]
tr\|A0A1S3CKG5\|A0A1S3CKG5_CUCME	3.3e-21	76.47	uncharacterized protein LOC103501828 OS=Cucumis melo OX=3656 GN=LOC103501828 PE=...	[more]
tr\|A0A1Q3AYA9\|A0A1Q3AYA9_CEPFO	3.0e-14	64.71	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_04238 PE=4...	[more]
tr\|A0A2I4GZ95\|A0A2I4GZ95_9ROSI	3.9e-14	64.18	uncharacterized protein LOC109012164 OS=Juglans regia OX=51240 GN=LOC109012164 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14742-RA	Carg14742-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14742	Cla023318	Watermelon (97103) v1	carwmB0304
Carg14742	Csa4G625040	Cucumber (Chinese Long) v2	carcuB0339
Carg14742	MELO3C025654	Melon (DHL92) v3.5.1	carmeB0317
Carg14742	ClCG11G017320	Watermelon (Charleston Gray)	carwcgB0305
Carg14742	CSPI04G22710	Wild cucumber (PI 183967)	carcpiB0345
Carg14742	Cucsa.057800	Cucumber (Gy14) v1	carcgyB0363
Carg14742	CmaCh01G012550	Cucurbita maxima (Rimu)	carcmaB0437
Carg14742	CmoCh01G013110	Cucurbita moschata (Rifu)	carcmoB0430
Carg14742	Lsi04G019960	Bottle gourd (USVL1VR-Ls)	carlsiB286
Carg14742	Cp4.1LG02g02000	Cucurbita pepo (Zucchini)	carcpeB0431
Carg14742	CsGy4G021170	Cucumber (Gy14) v2	carcgybB0323
Carg14742	MELO3C025654.2	Melon (DHL92) v3.6.1	carmedB0326
Carg14742	CsaV3_4G032950	Cucumber (Chinese Long) v3	carcucB0344
Carg14742	Cla97C11G223410	Watermelon (97103) v2	carwmbB0321
Carg14742	Bhi09G002886	Wax gourd	carwgoB0394

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14742	Silver-seed gourd	carcarB338
Carg14742	Cucurbita maxima (Rimu)	carcmaB0432
Carg14742	Cucurbita moschata (Rifu)	carcmoB0426
Carg14742	Cucurbita pepo (Zucchini)	carcpeB0432