CmoCh01G013110 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G013110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaC08g38120D protein
Location	Cmo_Chr01 : 10402275 .. 10402669 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGAAGGTGAAGAAAATCTGAAATTTTGACTTTTTCTAGAACCCTGGGTTAGGGCAACGAGACGACGGTGACGGCCTGAAGGAAGAAGCTAATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGTCCTAAGGTTCTACGTCTGCTCTATTTCGTTGGTGCTGGATGTAAATTTCTTCGATTCACCTCTTTTTCTTCTCTGTTTTAAATTTTGATTGTTTCGATTTATTAATTGTTCTATTCGATTATGTTTTGTAGTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCACAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAATCTCCTAATGATGCGGTACAGAAAGTCGTTAAGTGAACTTAG

mRNA sequence

GCGAAGGTGAAGAAAATCTGAAATTTTGACTTTTTCTAGAACCCTGGGTTAGGGCAACGAGACGACGGTGACGGCCTGAAGGAAGAAGCTAATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGTCCTAAGGTTCTACGTCTGCTCTATTTCGTTGGTGCTGGATTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCACAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAATCTCCTAATGATGCGGTACAGAAAGTCGTTAAGTGAACTTAG

Coding sequence (CDS)

ATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGTCCTAAGGTTCTACGTCTGCTCTATTTCGTTGGTGCTGGATTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCACAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAATCTCCTAATGATGCGGTACAGAAAGTCGTTAAGTGA

Homology

[Close]

BLAST of CmoCh01G013110 vs. TrEMBL
Match: A0A0A0L208_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625040 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-22
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEEV GPAGPK+LRLLYF GAGF+ + A+NKWREIE  SLLQQ+QKQRL+HQ +ESPN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of CmoCh01G013110 vs. TrEMBL
Match: A0A090ITT6_CUCSA (Uncharacterized protein OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-22
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTG+EV GPAGPK+LRLLYF GAGF+ + A+NKWREIE  SLLQQ+QKQRL+HQ +ESPN
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of CmoCh01G013110 vs. TrEMBL
Match: A0A059BUR7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03276 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-12
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEE++GPAGPK +RLLYFVGAGF+   A+NKWRE+E KSL  Q+Q+  L  Q    P 
Sbjct: 1  MTGEEISGPAGPKAIRLLYFVGAGFICVAAINKWRELERKSL--QQQQHGLKEQSPHDPA 60

Query: 61 DAVQKVV 68
          +AV K +
Sbjct: 61 NAVPKAI 65

[Close]

BLAST of CmoCh01G013110 vs. TrEMBL
Match: B9I1S9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11040g PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-12
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1


Query: 4  EEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLL-QQRQKQRLDHQF-AESPND 63
          E  AGPAGPKVLRLLYFVGAGF+ T+ +NKWREIE KS+L QQ+Q++++   F   S  +
Sbjct: 5  EAAAGPAGPKVLRLLYFVGAGFICTVGINKWREIERKSILEQQQQEKKMKSDFLPRSSTN 64

Query: 64 AVQKVVK 69
          +VQK +K
Sbjct: 65 SVQKAIK 71

[Close]

BLAST of CmoCh01G013110 vs. TrEMBL
Match: Q2HSD4_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g076020 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-12
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEE +GP GPK++RL+YFVGA    T+A+NKWRE E KS++QQ+Q+Q+     AE PN
Sbjct: 1  MTGEEYSGPPGPKLMRLVYFVGAAVAVTVAINKWREFESKSIIQQQQQQKGVKVVAEIPN 60

Query: 61 D----AVQKVVK 69
               AV K +K
Sbjct: 61 SSDSVAVHKALK 72

[Close]

BLAST of CmoCh01G013110 vs. TAIR10
Match: AT1G16916.1 (AT1G16916.1 unknown protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-12
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 8  GPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPNDAVQKVV 67
          GP  PK+LR++YFVGAGF+ T A+NKWRE+E  SLL+Q Q++         P D+VQK +
Sbjct: 5  GPPAPKMLRMVYFVGAGFLCTFAINKWREMERNSLLKQEQEKNQQGDVGLLPRDSVQKAM 64

Query: 68 K 69
          K
Sbjct: 65 K 65

[Close]

BLAST of CmoCh01G013110 vs. NCBI nr
Match: gi|778695678|ref|XP_011654034.1| (PREDICTED: uncharacterized protein LOC105435291 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-22
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEEV GPAGPK+LRLLYF GAGF+ + A+NKWREIE  SLLQQ+QKQRL+HQ +ESPN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of CmoCh01G013110 vs. NCBI nr
Match: gi|678241533|emb|CED89884.1| (uncharacterized protein [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 5.1e-22
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTG+EV GPAGPK+LRLLYF GAGF+ + A+NKWREIE  SLLQQ+QKQRL+HQ +ESPN
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of CmoCh01G013110 vs. NCBI nr
Match: gi|659127553|ref|XP_008463762.1| (PREDICTED: uncharacterized protein LOC103501828 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 9.6e-21
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEEV GPAGPK+LRLLYF GAGF+ + A+NKWREIE  SLLQQ QKQRL+HQ +ES N
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFICSFAINKWREIERNSLLQQHQKQRLNHQLSESRN 60

Query: 61 DAVQKVVK 69
          D VQKVV+
Sbjct: 61 DTVQKVVE 68

[Close]

BLAST of CmoCh01G013110 vs. NCBI nr
Match: gi|702377501|ref|XP_010062826.1| (PREDICTED: uncharacterized protein LOC104450096 [Eucalyptus grandis])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60
          MTGEE++GPAGPK +RLLYFVGAGF+   A+NKWRE+E KSL  Q+Q+  L  Q    P 
Sbjct: 1  MTGEEISGPAGPKAIRLLYFVGAGFICVAAINKWRELERKSL--QQQQHGLKEQSPHDPA 60

Query: 61 DAVQKVV 68
          +AV K +
Sbjct: 61 NAVPKAI 65

[Close]

BLAST of CmoCh01G013110 vs. NCBI nr
Match: gi|743901509|ref|XP_011044076.1| (PREDICTED: uncharacterized protein LOC105139362 [Populus euphratica])

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-12
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 1


Query: 4  EEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLL-QQRQKQRLDHQF-AESPND 63
          E  AGPAGPKVLRLLYFVGAGF+ T+ +NKWREIE KS+L QQ+Q++++ + F   S  +
Sbjct: 5  EAAAGPAGPKVLRLLYFVGAGFICTVGINKWREIERKSILEQQQQEKKMKNDFLPRSSTN 64

Query: 64 AVQKVVK 69
          +VQK +K
Sbjct: 65 SVQKAIK 71

The following BLAST results are available for this feature:

BLAST of CmoCh01G013110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G013110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L208_CUCSA	1.2e-22	77.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625040 PE=4 SV=1	[more]
A0A090ITT6_CUCSA	3.6e-22	76.47	Uncharacterized protein OS=Cucumis sativus PE=2 SV=1	[more]
A0A059BUR7_EUCGR	1.1e-12	58.21	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03276 PE=4 SV=1	[more]
B9I1S9_POPTR	2.6e-12	59.70	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11040g PE=4 SV=1	[more]
Q2HSD4_MEDTR	7.4e-12	54.17	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g076020 PE=4 SV=1	[more]

BLAST of CmoCh01G013110 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16916.1	1.3e-12	52.46	unknown protein	[more]

BLAST of CmoCh01G013110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695678\|ref\|XP_011654034.1\|	1.8e-22	77.94	PREDICTED: uncharacterized protein LOC105435291 [Cucumis sativus]	[more]
gi\|678241533\|emb\|CED89884.1\|	5.1e-22	76.47	uncharacterized protein [Cucumis sativus]	[more]
gi\|659127553\|ref\|XP_008463762.1\|	9.6e-21	75.00	PREDICTED: uncharacterized protein LOC103501828 [Cucumis melo]	[more]
gi\|702377501\|ref\|XP_010062826.1\|	1.6e-12	58.21	PREDICTED: uncharacterized protein LOC104450096 [Eucalyptus grandis]	[more]
gi\|743901509\|ref\|XP_011044076.1\|	2.1e-12	59.70	PREDICTED: uncharacterized protein LOC105139362 [Populus euphratica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G013110.1	CmoCh01G013110.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G013110	Cucsa.057800	Cucumber (Gy14) v1	cgycmoB0073
CmoCh01G013110	CmaCh01G012550	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G013110	Cla023318	Watermelon (97103) v1	cmowmB457
CmoCh01G013110	Csa4G625040	Cucumber (Chinese Long) v2	cmocuB462
CmoCh01G013110	MELO3C025654	Melon (DHL92) v3.5.1	cmomeB433
CmoCh01G013110	ClCG11G017320	Watermelon (Charleston Gray)	cmowcgB392
CmoCh01G013110	CSPI04G22710	Wild cucumber (PI 183967)	cmocpiB466
CmoCh01G013110	Lsi04G019960	Bottle gourd (USVL1VR-Ls)	cmolsiB421
CmoCh01G013110	Cp4.1LG02g02000	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G013110	MELO3C025654.2	Melon (DHL92) v3.6.1	cmomedB497
CmoCh01G013110	CsaV3_4G032950	Cucumber (Chinese Long) v3	cmocucB0552
CmoCh01G013110	Cla97C11G223410	Watermelon (97103) v2	cmowmbB436
CmoCh01G013110	Bhi09G002886	Wax gourd	cmowgoB0599
CmoCh01G013110	CsGy4G021170	Cucumber (Gy14) v2	cgybcmoB484
CmoCh01G013110	Carg14742	Silver-seed gourd	carcmoB0430

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G013110	Silver-seed gourd	carcmoB0871
CmoCh01G013110	Cucurbita moschata (Rifu)	cmocmoB013
CmoCh01G013110	Cucurbita moschata (Rifu)	cmocmoB174
CmoCh01G013110	Cucurbita moschata (Rifu)	cmocmoB330
CmoCh01G013110	Cucurbita maxima (Rimu)	cmacmoB041
CmoCh01G013110	Melon (DHL92) v3.5.1	cmomeB384
CmoCh01G013110	Cucurbita pepo (Zucchini)	cmocpeB461