Cucsa.055310 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.055310
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA-binding 8A
Location	scaffold00598 : 38175 .. 43986 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAAACAAGAAACCCTTGTTTCGATCCCCAAAACCCCCCCTACCCTTTCTCCCATCCTCTTTCTTCTTCCCTCACCATTTTTTAAGAACCAACAACCAGCTCTGACCAACATTTGATTACCCATGGCGAGCGCTGATGTAGAGGCTGTCGACTTTGAGCCCGAGGAAGATGACCTCATGGACGAGGATGGAGCCGCCGAAGCCGATGCCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACCGGCGGCGCTTCTTCCTCGCTTTCTGGAGGTCCAAAGAAGACTAAGGGTCGTGGATTTCGAGAGGAGTCTGATCGAAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCTGATGGCCCTGGCCCCCAACGATGTTAGTTTTTCTGCTTCTCTCTTTCAGCATTTTTCTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCTTCTTTATTACTTTATTTTGGCAGATTGGCGTTTACCATTTTGTTTTGCTGGTTTTTTTTTATTCTTTGGTTCATTAGAGTTAGGGTTACGAAAATTTGGATGGTTATTTACTTGGTAGGTGGCGGGTTTAGATGTATTTGCCTGTATGTTCTACGATAGGTTGCTTTTTCACCTCCTTCAATTTAGTTAAGAGTAAGCAAATCCCTTCCTTGAGCTTGAAGAGGTCTTGCTTACTGTTAATGTCGGTTGGTTTACTCCCTTCGTTTCCACAATGTCACAGATCTTAGCTAGAACTTGATATGGAATTTAATTGTAAACGAAAAGGATTCAAGTGATGTTGTGTGAAATTATCGTGGAATACATATAGTAAGAGAAAGTTCAAAGATTGAGCCTGCATTGCCTTATATCCCCAAAGCGGTGCACTTTTTGGAAGGGGCTGAGGAGTAAAATCACTTTTACATTCATCTGCCACCACGCCTACTCCAGTCCTCCTTTAGCAATTTCCATTTTTCTTCTTCTGGGTGAACTGGATCAACTGTTAGCAAAGGGATTTACAGTGGTCTCTCTACTCTATCACGAGTAGCCACCCATTCAAGATAAGAAAAGAATGCTTACTGTTATAGTTTAACCTGATTAAAGTTGGTTTGTTGACTAAAATAAAGCCACCTCTGTTTTCTCTTACGATAAAATTCTCCCTGCTTATTTGGTTGCATTTGGGATGGCTAACACCATCTCCTTTTCTTGGAGGGTCCCTGTCAATAGCTTTGGATCTTTCTTCTGAGTGAGCATCAAAAGGATTATATCACAATATGGAAGTGTCTCTTTTATGTGGGGATTTGGTATAGATTTTGGAACACACTTAATTGATTGTCGTCTTAGATGGAGTATCATTTTCTATGCGTAGCTCTTCGTAAGAATCCTCATTACCTAAATGAAAGTTGGGTTTTCATTAGAAGTAACTGTCTGAGCTTTTCTTATGAATAATTTAGAATGAAACCACTGTATGTTTTTGGCAAAGAGACTGGAGAAATTGGTTTCTCTTTCTTGTATATTTTATTTTATTGGTTTCTCCCTGCCCCTTGTCCCTAGTTTGTTTCTTGCTCCTTTTAGTTTCTTATTAAAAAAAATTATATAAAAAAACATTTGTATATCTTTTCTTGGATCGTCTGGTGATGGGAAGGCCATGGGTGTCGGTGGAGAAAATGCTGTCCGTTCTCTCTTTTAAAAAATTTATAGTTTTAGTTGATAGACGATGTAGAAAGAAAATGAGGTTGCACCAGTGTCATCCTTTTCTTCTAACAATAGTGCCAGATTTCTTGTCTTATAAGTTATGAGGTCCACACCCATATTATCGAAGGTCTTAACTTTTTTAGAGGTGAGACCCATATTCTCTTTCTCTCTCTCTCTCTCTCTCTCTTGAAAATGAAATTAAAATTTTCATTGATAAAGTGAATTGAGATTAGCGCTCCAAAATATGAGGTATCTAAAGAAAAGACAAATAGAAGAGACAACCCAACTGATGAACAGTAGTCCAAGCCTGATGGGACGAAAAAATCAACCTCAAATTAACTCGTAGATGCAATATGTAACTAATGAATCTTTAACACTATTTGTGTAACTACCTCTCTTGAACATGTAAAAGGGGCCTTTATAATGTTAGCAAAGACTACTTTCTTAAAGGAAAAGTTCTCTTTTTTCTTGGTGGAAGTATAAGTGTACAACCTTGGCTTGTTTGATTCTTTCAAATGATCTCACTCTTCCGCTTTCCGAAGCCCCTTGAAAAGTTATTTAGATAATGGGGTTGGTTCAGCTGGGACGTTCAAATGATCTTACCTAGTTTCTTCCCCCTGTAAAGCCCCTCAAAAAGTTATTATGACAAAAATGACCATCATTTCTTTACCTAATTAAGGTCTCCATATTGGTTGCTTAAAACAAGACGATGCATCCCTTTTGTTCTCATGTGGGTTTGCATATGTTTCTTGTGCCAGGAGTGCAACCAAAGCCTCATTTGGACCGGGAGAAACCATGGTATATAGGCAAGGAGAAGAATCTCAACTGGTAGGAAGTTTCTTCATCTTCATTGTTTTAAAAAACTATTGAGGACTTGAGCCTTTGTGGAACCATAATAGGCTTACATCTCTCACAAATGATGCTTGCGCTTTTGTGAAAACACATTGAGGCTTACAATCTCTATGCCTCTCCTAGTGATTAGAAAAACAAAAGTGATTTGACTAGTTCTTCAAAAATATTAAGGCTTGAGTTGTGACAATTACTGTTGGGAACTTAAGAATGCTGAAAGCATATATGTATAGTATAAATCAATCCTCTTAGCAATAATAGTAAGAGTAATGATAAAGATCTTCTTTTAGAATTTTTTATTAACATTATGGGGGTGAAGTTTCTTTTTACAATTTTATAGGACTTGTATTTAACAATTCTTGATCATATCAATTTAGGTTTTGTAAAATGTTTTTAATTCATTGTTTGAGACTTACTTCTCATAACGCCTCGAGGCTTATGCCTTTCCTCTTGAAGAGGAAAAGTCTCAAGGCCACCTTTAGCCTGTCAAAACATTGATCTTTAATAAGCTGATGACAACATTGTTTTTCGCCGTAATGATGCCGATGCTCTTAATAATTGGTGGGAAATTTTGTATTTGTTTATGGCTGGTAATGGATTTCGTTGAATATTTCTAAGACTTTGTTGATTGGTACTAATGTGGGTAAGGAAGAAGTTGTTGAATGGGTTTTCGGTTGTTTTCTTTTGACTCCTTTTGTAGTAACACTCAATTCACAGCCTCTTGATGATGGACAAGAAACAGGAAATTCTTTTGGAATTTTAGCTTGTTCATGTTTCAATTGAACTGGAAAGCACTCTTAATACTCTTTTTGTTTTATTTTCTGAGGAAGGGGGTTCTGTCTTCCCCTTTCCTTTAGGATGTTCTTTTTTGAGCCTTTTTGTGCATAATACATATCTTGTTTCTTATCTTAAAAATGGTTATAGACTAATTCATATGGTCTTTTAACTAATATTCCTTAGATTAATACATTTAAGAAATATATTCCTTAGATGAATGTCTGATTCTAGTTACTTTGTGTAGCTATTGAAGGATGGATCATTCTGGTAACTGGTGTCCATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTCGTCAAGGTATATCTGATTCCTTTATTATTTAATTTCTCCCTAAAGAAACTAGAATTTTTGTAGTTTTTTAAGAAAAGAACATGCATATGTTTAATTATTTAATAGTTTTAGAAAGTAGAATAACTATAAAATTTCATATTTTGCTAATGATCGGATGATTTGTAAGAAGAATGAAATAGTATTGTAACTTTTAAATATTTGAAAACAATTTTTTCCCCTAAATTCTTTTGTCTCCCTTTTACTTTGTGACCTCACTCTTCTTGAAAGCACGGCAATTTGTTTTAATATTAAGCAAGGTGTGCCAAAATGTTCCTCACCTAATCTGGTGTACCTTTCCCCACCTTTTCCTATTTATTTATTTCTTTATTTTTGTTTGTCAAGTCTACCCATTGGGGCAATTATTTTCAAGCTCCACTTGATCTTGTTTGTCTCATTTTTTTTTATTAAATTAAATGGCGTTTCTTGTGAAAATTAATTACTCAAAAGGCTAACCTGAGGGTAGAGCTCAAGTGGTGACATGTTTGTAATTGTCTATAATGTTACACAAGTTTGAACCCTTACCTACTTCTATTCTATCGACACGCACACACCCATGCGCCCACACGCCCAAGCACACAATGCAAGCCTTTATTAGAGTCTGAATGGGACCTTGGGGGAGCCACCCTGCCAGATAATCTGTATGCTGGAATTTGAAACCTCTTTAGCCTTCATTTTAAAATGAAAAGTTTTGCTTCTGTTTAAGAAAAAAAAATCTTTCTTCGGTTTTTCGTGATGCCCATATTTGTGTTTTTTATTCTACAAATTGGCGGTATAATAAATTTTTTCATGCAAATATCTGGATTGAAATAACTTCATCTACAGGGTTGCCCTTCTCTTTCGTACTTGCATATCTCTGATTGAAAGTTGGTTCCTTATCCCAAAGTATTAAGTTACGGGGTATAATTTATTGCTTGAGATTATTTTTTATAACATCATCACCTTTCCCTTGCTAACCATGTAATTTTGCTTCCAACTAGCTTTAGATTTTACTCGTGATGTGTAGCTACTGTAAGAATACCATATTGTTTAGCAGATTCACATTTATTTTTCGTTTCCTGAGTTTTGTCTGAAACTGGAGCTATTTCCCTTCTTTTCCATAAATTTTGGAAATATTTATTTGTTTGTATAGGAAACCTTCTGTATGTTTCGATAATGCTTTTCCATAGTTTCGTTGAAGAAACATGAGCACGTTTTTATAGGTAACATAATGTTTGCATGGTTGTATATGTCACTTTGAGATCTGAATTATTTTGGTGACAGATGTTTGTATAGGTAAACATAATCCGCATTGCAACCATCTATTTTGCTGAAAAATCTGAGCATTACATTTTTTTAACCAACTAATTATCTATTCTAATATAAACATCTTGAATGAAATGGTGAGAAACTACCATTTGTGTTTTCGTTCTATCTTGTCTGTTTTATTGCTCTTGCTATTATATACACATATATGTACTTATATTTGTTTTGGGTTTATCAAGGGATATGCATTAATCGAATACGAGAGTTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGTGCTGAACTTCTGACCCAAATCATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACGCAAGGTATGCATCTCTAATATCTCTTCAAGATCTGCAAAGGGAATTATCAAATGAATGAATTATACAAAATTAATAAACCTTATGTAAAGTTTTGTTCTAATTTAATTGCAGACCTGCTCGAGAACGACGTTCGAGGAGCCCTAGGAGGAGATACTGATCTTGAGGTGTAGAAACTTGATGTGTGGTATTTGTGGATTTTAATGGGAAAGGTGTTTTTCTTGTGAATTGGATTAGGAGAGATAATTTCTACTGAGATCTTACTCAATTGTCTCAAGATTCCCCTGGTTTCCAGCCTTTGTTTCTCGATCGTTGATGTGAATTGATGAATTGTATGTAACTTAGAGGATTTGAGGTCCATGATTTTCTTTTCTTCTTTTCTTCTTTTTTTGGATTAATTGAGGTTTTTGCCATTTTGTGTTGAATATCTGCTATTATATATATTTTTTTGTTTTAAATTCGGCTCT

mRNA sequence

GGCAAACAAGAAACCCTTGTTTCGATCCCCAAAACCCCCCCTACCCTTTCTCCCATCCTCTTTCTTCTTCCCTCACCATTTTTTAAGAACCAACAACCAGCTCTGACCAACATTTGATTACCCATGGCGAGCGCTGATGTAGAGGCTGTCGACTTTGAGCCCGAGGAAGATGACCTCATGGACGAGGATGGAGCCGCCGAAGCCGATGCCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACCGGCGGCGCTTCTTCCTCGCTTTCTGGAGGTCCAAAGAAGACTAAGGGTCGTGGATTTCGAGAGGAGTCTGATCGAAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCTGATGGCCCTGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTAACTGGTGTCCATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTCGTCAAGGGATATGCATTAATCGAATACGAGAGTTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGTGCTGAACTTCTGACCCAAATCATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACGCAAGACCTGCTCGAGAACGACGTTCGAGGAGCCCTAGGAGGAGATACTGATCTTGAGGTGTAGAAACTTGATGTGTGGTATTTGTGGATTTTAATGGGAAAGGTGTTTTTCTTGTGAATTGGATTAGGAGAGATAATTTCTACTGAGATCTTACTCAATTGTCTCAAGATTCCCCTGGTTTCCAGCCTTTGTTTCTCGATCGTTGATGTGAATTGATGAATTGTATGTAACTTAGAGGATTTGAGGTCCATGATTTTCTTTTCTTCTTTTCTTCTTTTTTTGGATTAATTGAGGTTTTTGCCATTTTGTGTTGAATATCTGCtattatatatatttttttgttttaaattCGGCTCT

Coding sequence (CDS)

ATGGCGAGCGCTGATGTAGAGGCTGTCGACTTTGAGCCCGAGGAAGATGACCTCATGGACGAGGATGGAGCCGCCGAAGCCGATGCCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACCGGCGGCGCTTCTTCCTCGCTTTCTGGAGGTCCAAAGAAGACTAAGGGTCGTGGATTTCGAGAGGAGTCTGATCGAAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCTGATGGCCCTGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTAACTGGTGTCCATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTCGTCAAGGGATATGCATTAATCGAATACGAGAGTTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGTGCTGAACTTCTGACCCAAATCATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACGCAAGACCTGCTCGAGAACGACGTTCGAGGAGCCCTAGGAGGAGATACTGA

Protein sequence

MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGRGFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNARPARERRSRSPRRRY*

Homology

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BLAST of Cucsa.055310 vs. Swiss-Prot
Match: RB8AB_XENLA (RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.4e-41
Identity = 97/194 (50.00%), Postives = 122/194 (62.89%), Query Frame = 1


Query: 4   ADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGRGFR 63
           ADV  +     ED  MDEDG    D S      KLK               KK KGRGF 
Sbjct: 2   ADVLDLHEAGGEDFAMDEDG----DES----IHKLKEKA------------KKRKGRGFG 61

Query: 64  EESDRNTRLAGSDFDSLKS-ADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIK 123
            +    TR+   D+DS++   D PGPQRS+EGWI+ VTGVHEEA E+D+ + FGEFGEIK
Sbjct: 62  ADEGTRTRIR-EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIK 121

Query: 124 NLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNA 183
           N+HLNLDRRTGF+KGYAL+EYE+++EA  A+  ++G +L+ Q ++VDW F  GP   K  
Sbjct: 122 NIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGP--PKGK 172

Query: 184 RPARERRSRSPRRR 197
           R +  RRSRSP RR
Sbjct: 182 RRSGRRRSRSPERR 172

[Close]

BLAST of Cucsa.055310 vs. Swiss-Prot
Match: RBM8A_XENTR (RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-40
Identity = 97/194 (50.00%), Postives = 121/194 (62.37%), Query Frame = 1


Query: 4   ADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGRGFR 63
           ADV  +     ED  MDEDG    D S      KLK               KK KGRGF 
Sbjct: 2   ADVLDLHEAGGEDFAMDEDG----DES----IHKLKEKA------------KKRKGRGFG 61

Query: 64  EESDRNTRLAGSDFDSLKS-ADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIK 123
            +     R+   D+DS++   D PGPQRS+EGWI+ VTGVHEEA E+D+ + FGEFGEIK
Sbjct: 62  ADEGTRARIR-EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIK 121

Query: 124 NLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNA 183
           N+HLNLDRRTGF+KGYAL+EYE+++EA  A+  ++G +L+ Q I+VDW F  GP   K  
Sbjct: 122 NIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFVRGP--PKGK 172

Query: 184 RPARERRSRSPRRR 197
           R +  RRSRSP RR
Sbjct: 182 RRSGRRRSRSPERR 172

[Close]

BLAST of Cucsa.055310 vs. Swiss-Prot
Match: RBM8A_DANRE (RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.4e-40
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = 1


Query: 55  KKTKGRGFREESDRNTRLAGSDFDSLKS-ADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 114
           KK KGRGF  E    +R+   D+D+++   D PGPQRS+EGWI+ VTGVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGSEEGARSRVR-EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDVHD 92

Query: 115 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFS 174
            F EFGEIKNLHLNLDRRTG++KGYAL+EYE+++EA+ A+  ++G EL+ Q I+VDW F 
Sbjct: 93  KFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFV 152

Query: 175 HGPIRRKNARPARERRSRSPRRR 197
            GP   K+ R    RRSRSP RR
Sbjct: 153 RGP--PKSKRRGGRRRSRSPDRR 172

[Close]

BLAST of Cucsa.055310 vs. Swiss-Prot
Match: RB8AA_XENLA (RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-39
Identity = 96/194 (49.48%), Postives = 121/194 (62.37%), Query Frame = 1


Query: 4   ADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGRGFR 63
           ADV  +     ED  MDEDG    D S      KLK               KK KGRGF 
Sbjct: 2   ADVLDLHEAGGEDFAMDEDG----DDS----IHKLKEKA------------KKRKGRGFG 61

Query: 64  EESDRNTRLAGSDFDSLKS-ADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIK 123
            +    TR+    +DS++   D PGPQRS+EGWI+ VTGVHEEA E+D+ + FGEFGEIK
Sbjct: 62  ADEGTKTRIR-EVYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIK 121

Query: 124 NLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNA 183
           N+HLNLDRRTGF+KGYAL+EYE+++EA  A+  ++G +L+ Q ++VDW F  GP   K  
Sbjct: 122 NIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGP--PKGK 172

Query: 184 RPARERRSRSPRRR 197
           R +  RRSRSP RR
Sbjct: 182 RRSGRRRSRSPERR 172

[Close]

BLAST of Cucsa.055310 vs. Swiss-Prot
Match: RBM8A_SALSA (RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.1e-39
Identity = 94/194 (48.45%), Postives = 122/194 (62.89%), Query Frame = 1


Query: 4   ADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGRGFR 63
           ADV  +     ED  MDEDG    D S      KLK               K+ KGRGF 
Sbjct: 2   ADVLDLHEAGGEDFAMDEDG----DDS----IHKLKEKA------------KRRKGRGFG 61

Query: 64  EESDRNTRLAGSDFDSLKS-ADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIK 123
            E    +R+   D+D+++   D PGPQRS+EGWI+ VTGVHEEA E+D+ + F EFGEIK
Sbjct: 62  SEEGARSRVR-EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEFGEIK 121

Query: 124 NLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNA 183
           NLHLNLDRRTG++KGYAL+EYE+++EA+ A+  ++G +++ Q I+VDW F  GP + K  
Sbjct: 122 NLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQDMMGQPISVDWGFVRGPPKSKR- 173

Query: 184 RPARERRSRSPRRR 197
           R    RRSRSP RR
Sbjct: 182 RGGGRRRSRSPDRR 173

[Close]

BLAST of Cucsa.055310 vs. TrEMBL
Match: A0A0A0M2V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G616290 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 6.1e-107
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NARPARERRSRSPRRRY 198
           NARPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]

BLAST of Cucsa.055310 vs. TrEMBL
Match: A0A067JH32_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25949 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.7e-86
Identity = 165/199 (82.91%), Postives = 175/199 (87.94%), Query Frame = 1


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MA+AD EAVDFEPEEDDLMDEDGA + DASPRAP PKLKSAITGGASSSLS  PKKTKGR
Sbjct: 1   MANADAEAVDFEPEEDDLMDEDGAVDVDASPRAPLPKLKSAITGGASSSLSA-PKKTKGR 60

Query: 61  GFREESD--RNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEF 120
           GFREE+D  R  RLA  DFDSL +  GPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG+F
Sbjct: 61  GFREEADADRQNRLASRDFDSLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGDF 120

Query: 121 GEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIR 180
           GEIKNLHLNLDRRTGFVKGYALIEYE FEEA+ AISAM+G E+LTQIINVDWAF +GPI+
Sbjct: 121 GEIKNLHLNLDRRTGFVKGYALIEYEKFEEAQNAISAMNGTEILTQIINVDWAFCNGPIK 180

Query: 181 RKNARPARERRSRSPRRRY 198
           RKN R  R  RSRSPRRRY
Sbjct: 181 RKNMRSGRAHRSRSPRRRY 198

[Close]

BLAST of Cucsa.055310 vs. TrEMBL
Match: B9RIF4_RICCO (Polyadenylate-binding protein, putative OS=Ricinus communis GN=RCOM_1578700 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.6e-83
Identity = 161/200 (80.50%), Postives = 175/200 (87.50%), Query Frame = 1


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MA+AD EAVDFEPEEDDLMDEDG  +ADASPRAP PKLKSAITGGA+SSLS  P+KTKGR
Sbjct: 1   MANADAEAVDFEPEEDDLMDEDGGVDADASPRAPLPKLKSAITGGAASSLSA-PRKTKGR 60

Query: 61  GFREESD--RNTRLAG-SDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE 120
           GFREE+D  R TRLA   DFDSL +  GPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG+
Sbjct: 61  GFREEADADRQTRLASRGDFDSLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGD 120

Query: 121 FGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPI 180
           FGEIKNLHLNLDRRTGFVKGYALIEYE FEEA+ AI++++G ELLTQIINVDWAF +GP 
Sbjct: 121 FGEIKNLHLNLDRRTGFVKGYALIEYEKFEEAQNAIASLNGTELLTQIINVDWAFCNGPT 180

Query: 181 RRKNARPARERRSRSPRRRY 198
           +RKN R  R  RSRSPRRRY
Sbjct: 181 KRKNMRSGRTHRSRSPRRRY 199

[Close]

BLAST of Cucsa.055310 vs. TrEMBL
Match: D7U4F5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01140 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 3.1e-82
Identity = 159/202 (78.71%), Postives = 175/202 (86.63%), Query Frame = 1


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEAD-ASPRAPFPKLKSAITGGASSSLSGGPKKTKG 60
           MASADVEAVDFEPE+DDLMDEDGA + D +SPRAP PKLKSAITGGA SSL+  PKKTKG
Sbjct: 1   MASADVEAVDFEPEDDDLMDEDGAVDVDNSSPRAPLPKLKSAITGGAPSSLAAAPKKTKG 60

Query: 61  RGFREESD--RNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE 120
           RGFR+++D  RN+R A  DFDSL S  GPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE
Sbjct: 61  RGFRDDTDADRNSRFAARDFDSLDSDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE 120

Query: 121 FGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPI 180
           FGE+KNLHLNLDRRTGFVKGYALIEYE+ EEA+ AISAM+G ELLTQ I+VDWAFS+GP 
Sbjct: 121 FGEVKNLHLNLDRRTGFVKGYALIEYENLEEAQAAISAMNGTELLTQTISVDWAFSNGPF 180

Query: 181 RRKN--ARPARERRSRSPRRRY 198
           +R+N   R  R  RSRSPRRRY
Sbjct: 181 KRRNMRRRSPRGHRSRSPRRRY 202

[Close]

BLAST of Cucsa.055310 vs. TrEMBL
Match: A0A061GTK7_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_040864 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.0e-81
Identity = 163/202 (80.69%), Postives = 175/202 (86.63%), Query Frame = 1


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPE+DDLMDED A   DASP+AP PKLKSAITGGAS+SLS GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEDDDLMDEDAAG--DASPQAPMPKLKSAITGGASTSLS-GPKKTKGR 60

Query: 61  GFRE-ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFG 120
           GFRE ++DR++RLA  DF+SL +  GPGPQRSIEGWIILVTGVHEEAQEDDL NAFGEFG
Sbjct: 61  GFREDDADRHSRLASRDFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLHNAFGEFG 120

Query: 121 EIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGP--- 180
           EIKNLHLNLDRRTGFVKGYALIEYE FEEA+ AISAMDGAELLTQ INVDWAFS+GP   
Sbjct: 121 EIKNLHLNLDRRTGFVKGYALIEYEKFEEAKNAISAMDGAELLTQTINVDWAFSNGPSTG 180

Query: 181 -IRRKNARPARERRSRSPRRRY 198
             +RK  R  R  RSRSPRRRY
Sbjct: 181 GFKRKIMRSGRTHRSRSPRRRY 199

[Close]

BLAST of Cucsa.055310 vs. TAIR10
Match: AT1G51510.1 (AT1G51510.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-70
Identity = 141/206 (68.45%), Postives = 161/206 (78.16%), Query Frame = 1


Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADASPRAPFPKLKSAITGGASSSLSGGPKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   AD SPRA  P+LKSAI G    S     KKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGESA----KKTK 60

Query: 61  GRGFREE--SDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG 120
           GRGFREE  SDR  RL+  DF+SL S   PGPQRS+EGWIILV+GVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 EFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGP 180
           +FGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+GAELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNARPARERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]

BLAST of Cucsa.055310 vs. TAIR10
Match: AT5G64200.1 (AT5G64200.1 ortholog of human splicing factor SC35)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 1


Query: 87  GPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESF 146
           GP    + + +LV  +      DDL   F ++G++ ++ +  DRRTG  +G+A + Y+  
Sbjct: 8   GPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67

Query: 147 EEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNAR--------PARERRSRSPRR 196
           +EA KA+  +DG  +  + I V +A  +GP   K ++         +R  RSRSPRR
Sbjct: 68  DEAHKAVERLDGRVVDGREITVQFA-KYGPNAEKISKGRVVEPPPKSRRSRSRSPRR 123

[Close]

BLAST of Cucsa.055310 vs. TAIR10
Match: AT5G52040.2 (AT5G52040.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-09
Identity = 42/147 (28.57%), Postives = 76/147 (51.70%), Query Frame = 1


Query: 59  GRGFREESDRNTRL-AGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE 118
           GR  R E  +N R  AG    S +S+ G  P +++     ++    +  +  DL+  F  
Sbjct: 64  GRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTL----FVINFDAQNTRTRDLERHFEP 123

Query: 119 FGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAF----- 178
           +G+I N+ +         + +A I+YE+ E+A +A+ A + ++L+ ++I+V++A      
Sbjct: 124 YGKIVNVRIR--------RNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDS 183

Query: 179 ---SHGPIRRKNARPARERRSRSPRRR 197
               + P RR++  P R RRS SP RR
Sbjct: 184 RGNGYSPERRRDRSPDRRRRSPSPYRR 198

[Close]

BLAST of Cucsa.055310 vs. TAIR10
Match: AT4G25500.1 (AT4G25500.1 arginine/serine-rich splicing factor 35)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 43/152 (28.29%), Postives = 75/152 (49.34%), Query Frame = 1


Query: 58  KGRGFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGW-----IILVTGVHEEAQEDDLQ 117
           KGR  R E  ++ R  G D  S     G G +RS         + ++    +  +  DL+
Sbjct: 63  KGRRLRVEWTKSER--GGDKRS-----GGGSRRSSSSMRPSKTLFVINFDADNTRTRDLE 122

Query: 118 NAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAF 177
             F  +G+I N+ +         + +A I+YE+ E+A +A+ A + ++L+ ++I+V++A 
Sbjct: 123 KHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAV 182

Query: 178 --------SHGPIRRKNARPARERRSRSPRRR 197
                    H P RR++  P R RRS SP +R
Sbjct: 183 KDDDARGNGHSPERRRDRSPERRRRSPSPYKR 199

[Close]

BLAST of Cucsa.055310 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3)

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-08
Identity = 25/75 (33.33%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 97  ILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAM 156
           + + G+     ED L+ AF ++GE+ +  + LDR TG  +G+  + + S E A  AI A+
Sbjct: 42  LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101

Query: 157 DGAELLTQIINVDWA 172
           DG +L  +++ V++A
Sbjct: 102 DGRDLHGRVVKVNYA 116

[Close]

BLAST of Cucsa.055310 vs. NCBI nr
Match: gi|449442559|ref|XP_004139049.1| (PREDICTED: RNA-binding protein 8A-B [Cucumis sativus])

HSP 1 Score: 394.8 bits (1013), Expect = 8.8e-107
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NARPARERRSRSPRRRY 198
           NARPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]

BLAST of Cucsa.055310 vs. NCBI nr
Match: gi|802764700|ref|XP_012090039.1| (PREDICTED: RNA-binding protein 8A [Jatropha curcas])

HSP 1 Score: 326.2 bits (835), Expect = 3.8e-86
Identity = 165/199 (82.91%), Postives = 175/199 (87.94%), Query Frame = 1


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MA+AD EAVDFEPEEDDLMDEDGA + DASPRAP PKLKSAITGGASSSLS  PKKTKGR
Sbjct: 1   MANADAEAVDFEPEEDDLMDEDGAVDVDASPRAPLPKLKSAITGGASSSLSA-PKKTKGR 60

Query: 61  GFREESD--RNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEF 120
           GFREE+D  R  RLA  DFDSL +  GPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG+F
Sbjct: 61  GFREEADADRQNRLASRDFDSLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGDF 120

Query: 121 GEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIR 180
           GEIKNLHLNLDRRTGFVKGYALIEYE FEEA+ AISAM+G E+LTQIINVDWAF +GPI+
Sbjct: 121 GEIKNLHLNLDRRTGFVKGYALIEYEKFEEAQNAISAMNGTEILTQIINVDWAFCNGPIK 180

Query: 181 RKNARPARERRSRSPRRRY 198
           RKN R  R  RSRSPRRRY
Sbjct: 181 RKNMRSGRAHRSRSPRRRY 198

[Close]

BLAST of Cucsa.055310 vs. NCBI nr
Match: gi|255544924|ref|XP_002513523.1| (PREDICTED: RNA-binding protein 8A [Ricinus communis])

HSP 1 Score: 317.0 bits (811), Expect = 2.3e-83
Identity = 161/200 (80.50%), Postives = 175/200 (87.50%), Query Frame = 1


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MA+AD EAVDFEPEEDDLMDEDG  +ADASPRAP PKLKSAITGGA+SSLS  P+KTKGR
Sbjct: 1   MANADAEAVDFEPEEDDLMDEDGGVDADASPRAPLPKLKSAITGGAASSLSA-PRKTKGR 60

Query: 61  GFREESD--RNTRLAG-SDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE 120
           GFREE+D  R TRLA   DFDSL +  GPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG+
Sbjct: 61  GFREEADADRQTRLASRGDFDSLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGD 120

Query: 121 FGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPI 180
           FGEIKNLHLNLDRRTGFVKGYALIEYE FEEA+ AI++++G ELLTQIINVDWAF +GP 
Sbjct: 121 FGEIKNLHLNLDRRTGFVKGYALIEYEKFEEAQNAIASLNGTELLTQIINVDWAFCNGPT 180

Query: 181 RRKNARPARERRSRSPRRRY 198
           +RKN R  R  RSRSPRRRY
Sbjct: 181 KRKNMRSGRTHRSRSPRRRY 199

[Close]

BLAST of Cucsa.055310 vs. NCBI nr
Match: gi|225431497|ref|XP_002281228.1| (PREDICTED: RNA-binding protein 8A [Vitis vinifera])

HSP 1 Score: 312.8 bits (800), Expect = 4.4e-82
Identity = 159/202 (78.71%), Postives = 175/202 (86.63%), Query Frame = 1


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEAD-ASPRAPFPKLKSAITGGASSSLSGGPKKTKG 60
           MASADVEAVDFEPE+DDLMDEDGA + D +SPRAP PKLKSAITGGA SSL+  PKKTKG
Sbjct: 1   MASADVEAVDFEPEDDDLMDEDGAVDVDNSSPRAPLPKLKSAITGGAPSSLAAAPKKTKG 60

Query: 61  RGFREESD--RNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE 120
           RGFR+++D  RN+R A  DFDSL S  GPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE
Sbjct: 61  RGFRDDTDADRNSRFAARDFDSLDSDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGE 120

Query: 121 FGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPI 180
           FGE+KNLHLNLDRRTGFVKGYALIEYE+ EEA+ AISAM+G ELLTQ I+VDWAFS+GP 
Sbjct: 121 FGEVKNLHLNLDRRTGFVKGYALIEYENLEEAQAAISAMNGTELLTQTISVDWAFSNGPF 180

Query: 181 RRKN--ARPARERRSRSPRRRY 198
           +R+N   R  R  RSRSPRRRY
Sbjct: 181 KRRNMRRRSPRGHRSRSPRRRY 202

[Close]

BLAST of Cucsa.055310 vs. NCBI nr
Match: gi|720043881|ref|XP_010269705.1| (PREDICTED: RNA-binding protein 8A-B [Nelumbo nucifera])

HSP 1 Score: 312.4 bits (799), Expect = 5.7e-82
Identity = 161/201 (80.10%), Postives = 178/201 (88.56%), Query Frame = 1


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MA+ADVEAVDFEPEEDDLMDEDGA + + SPRAP PKLKSAITGG SSSLS GPKKTKGR
Sbjct: 1   MANADVEAVDFEPEEDDLMDEDGAVDVETSPRAPLPKLKSAITGG-SSSLS-GPKKTKGR 60

Query: 61  GFREESD--RNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEF 120
           GFREE+D  RN+R A ++F+SL S  GPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEF
Sbjct: 61  GFREETDAERNSRFAANNFESLDSDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEF 120

Query: 121 GEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIR 180
           GEI+NLHLNLDRRTGFVKGYALIEYE+FEEA+ AISAM+G ELLTQI++VDWAFS+GP R
Sbjct: 121 GEIRNLHLNLDRRTGFVKGYALIEYENFEEAQAAISAMNGTELLTQIVSVDWAFSNGPYR 180

Query: 181 RKN--ARPARERRSRSPRRRY 198
           ++N   R  R  RSRSPRRRY
Sbjct: 181 KRNMRRRSPRGHRSRSPRRRY 199

The following BLAST results are available for this feature:

BLAST of Cucsa.055310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RB8AB_XENLA	8.4e-41	50.00	RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1	[more]
RBM8A_XENTR	2.4e-40	50.00	RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1	[more]
RBM8A_DANRE	5.4e-40	57.34	RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1	[more]
RB8AA_XENLA	1.2e-39	49.48	RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1	[more]
RBM8A_SALSA	2.1e-39	48.45	RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1	[more]

BLAST of Cucsa.055310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2V3_CUCSA	6.1e-107	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G616290 PE=4 SV=1	[more]
A0A067JH32_JATCU	2.7e-86	82.91	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25949 PE=4 SV=1	[more]
B9RIF4_RICCO	1.6e-83	80.50	Polyadenylate-binding protein, putative OS=Ricinus communis GN=RCOM_1578700 PE=4...	[more]
D7U4F5_VITVI	3.1e-82	78.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01140 PE=4 SV=...	[more]
A0A061GTK7_THECC	2.0e-81	80.69	RNA-binding family protein OS=Theobroma cacao GN=TCM_040864 PE=4 SV=1	[more]

BLAST of Cucsa.055310 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G51510.1	1.1e-70	68.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G64200.1	1.1e-09	31.62	ortholog of human splicing factor SC35	[more]
AT5G52040.2	1.4e-09	28.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G25500.1	1.2e-08	28.29	arginine/serine-rich splicing factor 35	[more]
AT5G61030.1	3.4e-08	33.33	glycine-rich RNA-binding protein 3	[more]

BLAST of Cucsa.055310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442559\|ref\|XP_004139049.1\|	8.8e-107	100.00	PREDICTED: RNA-binding protein 8A-B [Cucumis sativus]	[more]
gi\|802764700\|ref\|XP_012090039.1\|	3.8e-86	82.91	PREDICTED: RNA-binding protein 8A [Jatropha curcas]	[more]
gi\|255544924\|ref\|XP_002513523.1\|	2.3e-83	80.50	PREDICTED: RNA-binding protein 8A [Ricinus communis]	[more]
gi\|225431497\|ref\|XP_002281228.1\|	4.4e-82	78.71	PREDICTED: RNA-binding protein 8A [Vitis vinifera]	[more]
gi\|720043881\|ref\|XP_010269705.1\|	5.7e-82	80.10	PREDICTED: RNA-binding protein 8A-B [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR008111	RNA-bd_8
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0000166	nucleotide binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0035145	exon-exon junction complex
cellular_component	GO:0016604	nuclear body
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.055310.1	Cucsa.055310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 97..161 score: 6.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 96..169 score: 4.5
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 95..173 score: 15
IPR008111	RNA-binding motif protein 8	PRINTS	PR01738	RNABINDINGM8	coord: 86..100 score: 2.1E-17coord: 51..63 score: 2.1E-17coord: 160..172 score: 2.1E-17coord: 142..158 score: 2.1
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 84..178 score: 7.8
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 88..196 score: 4.48
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 5..197 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.055310	Cla006324	Watermelon (97103) v1	cgywmB044
Cucsa.055310	Csa1G616290	Cucumber (Chinese Long) v2	cgycuB040
Cucsa.055310	MELO3C015160	Melon (DHL92) v3.5.1	cgymeB039
Cucsa.055310	ClCG03G013000	Watermelon (Charleston Gray)	cgywcgB045
Cucsa.055310	CSPI01G30610	Wild cucumber (PI 183967)	cgycpiB041
Cucsa.055310	CmaCh10G009140	Cucurbita maxima (Rimu)	cgycmaB0070
Cucsa.055310	CmaCh11G008620	Cucurbita maxima (Rimu)	cgycmaB0071
Cucsa.055310	CmoCh11G008720	Cucurbita moschata (Rifu)	cgycmoB0066
Cucsa.055310	CmoCh10G009550	Cucurbita moschata (Rifu)	cgycmoB0065
Cucsa.055310	Lsi06G005460	Bottle gourd (USVL1VR-Ls)	cgylsiB044
Cucsa.055310	Cp4.1LG18g01820	Cucurbita pepo (Zucchini)	cgycpeB0066
Cucsa.055310	Cp4.1LG04g12240	Cucurbita pepo (Zucchini)	cgycpeB0067
Cucsa.055310	MELO3C015160.2	Melon (DHL92) v3.6.1	cgymedB039
Cucsa.055310	CsaV3_1G043070	Cucumber (Chinese Long) v3	cgycucB043
Cucsa.055310	Bhi02G001288	Wax gourd	cgywgoB045
Cucsa.055310	Carg25436	Silver-seed gourd	carcgyB0491
Cucsa.055310	Carg16925	Silver-seed gourd	carcgyB0538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.055310	Watermelon (97103) v2	cgywmbB044