Carg25436 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25436
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding 8A
Location	Cucurbita_argyrosperma_scaffold_300 : 106513 .. 110260 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATTGGGAAACCCTTGTTTGGATTCCCAAAACCCCTGCCATTCCCATCTTCTTCCCTCCCGTTTGCCCTTCAGCATTTGGCAGAACCGATTTGGAGCTCTGAGAGACCTTTGGGTTAGCTATGGCCAGCGCTGATGTTGAGGCTGTCGACTTTGAGCCCGAGGAAGACGACCTCATGGACGAGGATGGAGCTGCCGAAGCCGATGTCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACTGGTGGCGCATCTTCCACGTTGGCCGGTGGTTTGAAGAAAACCAAGGGTCGTGGATTTCGAGAAGATTCTGATCGTAACACCCGTCTTGCTGGGTCGGATTTCGATTCCCTCAATTCTGCTGATGGCCCTGGCGTCCAACGATGTTAGTCTTGCCTTTCTCTCTTTCTCTATCTATCTGTTATTCTCATTTACTTCGTTTGACTGATTGCGTTTTTTTTTTTTTTTTTTTTTTCTGTTAATGTCGGTTAGTTTTCCCTCTTGTTTCAATAATGCAAATCTTAGCTGAAATTTTGGTGTTAAAGATTCATGTTTATTAGCTATATATTGCTTCTTGGAGTTGAATGCAAGGTTGGTTTCTTTTAGGAGTTTGGTGGTTGAGAGGATCTTCGGCTACTTATCTAAAGAGGAAGAATTTTCTTCTTTCTAGGGGGGAACTGAGGAAGTATAACCTTGGTTCGTTTGGGTCTTTCAAACGAAAGTTATTTACAATATGGGGTTAGTTCAATTGGGTCATTCAAATGAGCTTACTTACTCTTTATCCCTTTAAACCACAAAAGTTATTAAGAAAATGAAGAAGTTAATCGGGAACTTTTTAGGGAGAGGCAAATAGAGAGGGTAGCGGCACATTGTGAAATGCTTATTGTTCGCTTACCTTCCTCATTGGTTGCTTAAAACAAGGAACCTTTTTGTTCTAGTGTGGGTTTGTAGATTTTCCTTGGAGAGATCATTCAGCATCAGCTGATTATAATCAAGGACGGGTTAAGTGGTCTCAGTTGGTTTACTTGTTCTCCTTCATCCTCTTGTCCTAAATCCCCTTGGTTCCATGCCAATAAGTGTTGATCGTTAGCTGGTCAATTCTTCTATTTTAAGTTGGAAAAGGGGAGAAATTACAGTATTGGTCGGGTGTTTTAGACCTCTACTCATTCCTAGCTTGTATGATGTATGATCTCTCATGTATCAAATATGAGGTTGAAACTCATAGATGGAATAAACTTTACCCTCATAAGTAAATTTTGCTAATTATGCATCCTAATCAATAAGATTCTAAATTGTGGGCTTTGGGTAGTTTGGAGTTTTATTGTGCTAATCGTTTCTCTCTAAAGCTTTTTGTGATTTATTTGTAGTACAATAGATGTGGGGTATGCACATTTGAGTACGTGCCAATTACCTTTGAGCTAGGCTCATTTTGGCTTGTGAGTTGCTTATTGTATTCTAAAAAGTTTGTCTTTTGGGATCAAGCATTCTAAAGTTCCTAATAGGATTCAAGTTTTCTCCGTGGTCCCTTGTCATCTATTTCATCAAAACTAATGACAGGAATATCGGATTCAGTGATGAAATCCTTGAATCTCTCCCTTATTCCCAACAGTGTATTAACCTTAGTAATAGTGTAGAGGATAAGCCACCTTTTATCGTTCACCCTTTTCCTATGGCTGTTGAATGTTGTCTTCCTGGAATTTTGCTCACACGATTGTATGCACATGTATTTTGCAGTCTTTCTCTTGAAAGCCTAAAATGATTTGCCTTTTTGGTGCTAAAATGGTTCTTTGGTGAATGCTTGTATTGCTCATCTTTGGCACTTGTGCTTGAAAAGACGCAATTGATTTTTTTATGATACTCTAATACTTGGAATGATTTCTTTGCTTTGATTCATTTTGTAGCTCTCCTCTGGAGCTTTTTCAACAATTTTTTTTTTTTTTAATTATTATCCTATCTTAGAGATTTAAACTGGGAAGCTCTTCATAATTTCTTCGTTTGGGTTTGGGGTACATCTTATCCTCCCCTTTTGTGCACTTTTTCAATGTTTTTTAGTTATTTATAGAGTTTTTGTCTACTGAACAAGAAAAGCGGCCCAGGACTTTAGTCATTTCAAGAAAAAAAAATCCACAAACAATTATCCTCTTGGATTTATGAGTAAACAAATGATTGGATGTGTCCAAATTTCCATAAACAAGAAAGTTCACGTGTGAGGCAGTATATCCTTTAGCTAGTGCACTTTTTGAACAATTTCTAATTCTAGTTACTGTGTGTAGCTATTGAAGGATGGATCATTCTGGTATCTGGTGTACACGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGACTTTGGGGAGATAAAGAATTTGCATCTAAATCTCGATCGCCGTACTGGGTTTGTCAAGGTATATTTGGTTACCATTTATTTTTATTTTTTCCTATAGAAACCGGAACTTATGTTTTATCTGCTTCCGATTAAGGAGAAGGAGAATATGCATATATGTGGTTGTCTTATAGTTAAAAATGTATAATAACTAGGAAGTTTTGAAAGGAATCCAAATAGAAAACTCATATTTTGATGATGATCGTATGGTTTGTAAGAAGAATGGAGTAGTATTGTAAATTCTATTTTGATATTGAAAAACAATTTAATTTGCGTCTTCTCCCTTTTCTTTGCGTCCCTTCCCAAAAGCACAATAAATTATCTTAATATTAAGTCTACCGATTGGGGCAGTGTTTTTCAAGCTCCATTCGAGTTTATAGCATCTTTCATGAGCATTAAACTTCGAAATCTGGATTATTTTGGTGATAGATATCTGCATAGGTAACACATTGCATGCATATTACAATAGTCTGCTTTGCCATAGGTTATTAAGTGACAGCCGTATGTATTGGAGCTGTAAGTAGAAATTTTTAGTTCCGATATTATATCCCGAGTTGATTGATGAAGATGACTATTCGGGCTTCCATTGCATCTCATCTGTTATCTATTGTTAACGATCCCCGACTCAGAAATTTACCGATTTTCCACTGTGCTGAAGTGCTGATTAATATTTACTATTTTGGTTTTGGCAAGGGGTATGCGTTGATCGAATACGAGAGCTTTGAGGAAGCAGAGAAAGCAATATCTACCATGGATGGAGCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCGTGGACCCATCAGAAGAAAGAACACAAGGTATGCTTGCTTCTACAAGATCCATTCAATATTTGCAAGGGGAATAGTCACAGTCTATAACCTTTCGTTCTAATTTAACCGCAGACCTGCACGAGAACGACGTTCGAGGAGCCCAAGGAGGAGATATTGATCTGGAGGTGTAGAACTCCAGGTGTGGTGTGGTGTTTATGATTTTAAATTGGAAAGGTGTTGTGTTGTGGATTAGATATTAGGTGATGTTTCTACTGAGCTCTTACTCAACTGTCTCTCAAGATTCCCCTGGTTTCTTGGGGGATCTGAAGTTGATGATATTCCCCCCTTTTTCCTTGGATTACTTGAGGTTCATGCTTTTTTGTGTTGAAACCTGCTATTTTGTATATTCTTTTGTTCCAAATTTGGTTCGGATCGAGGGTTTTGGATTTGATCGTTCTCCGAAAGCCCTCCTCCGTTGGAATCACATGTACTCTTTTCTTTGAGGTCAGAGGTTCAAATTCTCGTTATTTCATATGATTTTAGTATTAATATATTGATTTTATTTTT

mRNA sequence

GAAATTGGGAAACCCTTGTTTGGATTCCCAAAACCCCTGCCATTCCCATCTTCTTCCCTCCCGTTTGCCCTTCAGCATTTGGCAGAACCGATTTGGAGCTCTGAGAGACCTTTGGGTTAGCTATGGCCAGCGCTGATGTTGAGGCTGTCGACTTTGAGCCCGAGGAAGACGACCTCATGGACGAGGATGGAGCTGCCGAAGCCGATGTCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACTGGTGGCGCATCTTCCACGTTGGCCGGTGGTTTGAAGAAAACCAAGGGTCGTGGATTTCGAGAAGATTCTGATCGTAACACCCGTCTTGCTGGGTCGGATTTCGATTCCCTCAATTCTGCTGATGGCCCTGGCGTCCAACGATCTATTGAAGGATGGATCATTCTGGTATCTGGTGTACACGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGACTTTGGGGAGATAAAGAATTTGCATCTAAATCTCGATCGCCGTACTGGGTTTGTCAAGGGGTATGCGTTGATCGAATACGAGAGCTTTGAGGAAGCAGAGAAAGCAATATCTACCATGGATGGAGCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCGTGGACCCATCAGAAGAAAGAACACAAGACCTGCACGAGAACGACGTTCGAGGAGCCCAAGGAGGAGATATTGATCTGGAGGTGTAGAACTCCAGGTGTGGTGTGGTGTTTATGATTTTAAATTGGAAAGGTGTTGTGTTGTGGATTAGATATTAGGTGATGTTTCTACTGAGCTCTTACTCAACTGTCTCTCAAGATTCCCCTGGTTTCTTGGGGGATCTGAAGTTGATGATATTCCCCCCTTTTTCCTTGGATTACTTGAGGTTCATGCTTTTTTGTGTTGAAACCTGCTATTTTGTATATTCTTTTGTTCCAAATTTGGTTCGGATCGAGGGTTTTGGATTTGATCGTTCTCCGAAAGCCCTCCTCCGTTGGAATCACATGTACTCTTTTCTTTGAGGTCAGAGGTTCAAATTCTCGTTATTTCATATGATTTTAGTATTAATATATTGATTTTATTTTT

Coding sequence (CDS)

ATGGCCAGCGCTGATGTTGAGGCTGTCGACTTTGAGCCCGAGGAAGACGACCTCATGGACGAGGATGGAGCTGCCGAAGCCGATGTCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACTGGTGGCGCATCTTCCACGTTGGCCGGTGGTTTGAAGAAAACCAAGGGTCGTGGATTTCGAGAAGATTCTGATCGTAACACCCGTCTTGCTGGGTCGGATTTCGATTCCCTCAATTCTGCTGATGGCCCTGGCGTCCAACGATCTATTGAAGGATGGATCATTCTGGTATCTGGTGTACACGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGACTTTGGGGAGATAAAGAATTTGCATCTAAATCTCGATCGCCGTACTGGGTTTGTCAAGGGGTATGCGTTGATCGAATACGAGAGCTTTGAGGAAGCAGAGAAAGCAATATCTACCATGGATGGAGCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCGTGGACCCATCAGAAGAAAGAACACAAGACCTGCACGAGAACGACGTTCGAGGAGCCCAAGGAGGAGATATTGA

Protein sequence

MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGRGFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRKNTRPARERRSRSPRRRY

Homology

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BLAST of Carg25436 vs. NCBI nr
Match: XP_023529212.1 (RNA-binding protein Y14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.6 bits (971), Expect = 1.3e-101
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE
Sbjct: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFSRGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSRGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRPARERRSRSPRRRY
Sbjct: 181 NTRPARERRSRSPRRRY 197

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BLAST of Carg25436 vs. NCBI nr
Match: XP_022931624.1 (RNA-binding protein Y14-like [Cucurbita moschata])

HSP 1 Score: 377.9 bits (969), Expect = 2.1e-101
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE
Sbjct: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFSRGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISGMDGAELLTQIINVDWAFSRGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRPARERRSRSPRRRY
Sbjct: 181 NTRPARERRSRSPRRRY 197

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BLAST of Carg25436 vs. NCBI nr
Match: XP_022968337.1 (RNA-binding protein Y14-like [Cucurbita maxima])

HSP 1 Score: 361.3 bits (926), Expect = 2.1e-96
Identity = 188/197 (95.43%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADVSPRA FPKLKSAITGGASSTLA   KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRATFPKLKSAITGGASSTLAXXXKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFREDSDRNTRLAGSDFDSLNSAD PG+QRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE
Sbjct: 61  GFREDSDRNTRLAGSDFDSLNSADCPGIQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFSRGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSRGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRP RE+RSRSPRRRY
Sbjct: 181 NTRPVREQRSRSPRRRY 197

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BLAST of Carg25436 vs. NCBI nr
Match: XP_004139049.1 (PREDICTED: RNA-binding protein 8A-B [Cucumis sativus] >XP_008450386.1 PREDICTED: RNA-binding protein 8A-B [Cucumis melo] >KGN66511.1 hypothetical protein Csa_1G616290 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 1.0e-95
Identity = 185/197 (93.91%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEAD SPRAPFPKLKSAITGGASS+L+GG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFRE+SDRNTRLAGSDFDSL SADGPG QRSIEGWIILV+GVHEEAQEDDLQNAFG+FGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFS GPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           N RPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

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BLAST of Carg25436 vs. NCBI nr
Match: XP_022961208.1 (RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding protein Y14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.5 bits (911), Expect = 1.1e-94
Identity = 182/197 (92.39%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEAD SPRAPFPKLKSAITGGASS+LAGG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFRE+SDRNTRL GSDFDSL SADGPG QRSIEGWIILV+GVHEEAQEDDLQNAFG+FGE
Sbjct: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAIS MDG+ELLTQIINVDWAFS GPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

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BLAST of Carg25436 vs. TAIR10
Match: AT1G51510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 250.4 bits (638), Expect = 9.4e-67
Identity = 141/206 (68.45%), Postives = 160/206 (77.67%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADVSPRAPFPKLKSAITGGASSTLAGGLKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   ADVSPRA  P+LKSAI G    +     KKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES----AKKTK 60

Query: 61  GRGFRE--DSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFG 120
           GRGFRE  DSDR  RL+  DF+SL S   PG QRS+EGWIILVSGVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 DFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGP 180
           DFGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AIS M+GAELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNTRPARERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]

BLAST of Carg25436 vs. TAIR10
Match: AT3G11400.2 (eukaryotic translation initiation factor 3G1)

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-09
Identity = 30/102 (29.41%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 73  AGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGEIKNLHLNLDRRT 132
           AG+D     SA G  ++R  +   + V+ + E+ +E DL   F  FG +  +++ +D++T
Sbjct: 222 AGAD----RSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKT 281

Query: 133 GFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSR 175
           G  +G+  + + S E+A++AI+ ++G      I+ V+WA  R
Sbjct: 282 GVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPR 319

[Close]

BLAST of Carg25436 vs. TAIR10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-08
Identity = 25/78 (32.05%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 97  ILVSGVHEEAQEDDLQNAFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTM 156
           + + G+     ED L+ AF  +GE+ +  + LDR TG  +G+  + + S E A  AI  +
Sbjct: 42  LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101

Query: 157 DGAELLTQIINVDWAFSR 175
           DG +L  +++ V++A  R
Sbjct: 102 DGRDLHGRVVKVNYANDR 119

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BLAST of Carg25436 vs. TAIR10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 97  ILVSGVHEEAQEDDLQNAFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTM 156
           I V G+     E  L+ AF  +GE+ +  + +DR TG  +G+A + + S EEA  A+  +
Sbjct: 36  IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 95

Query: 157 DGAELLTQIINVDWAFSRG 176
           DG +L  + I V++A  RG
Sbjct: 96  DGQDLHGRRIRVNYATERG 113

[Close]

BLAST of Carg25436 vs. TAIR10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 25/78 (32.05%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 97  ILVSGVHEEAQEDDLQNAFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTM 156
           + VSG+ +    + L+ AF  FGE+ +  +  DR +G+ KG+  + Y + E++ K I+ M
Sbjct: 58  LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117

Query: 157 DGAELLTQIINVDWAFSR 175
           DG  L   +I  ++A  R
Sbjct: 118 DGKFLDGWVIFAEYARPR 135

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BLAST of Carg25436 vs. Swiss-Prot
Match: sp|F4I9J7|Y14_ARATH (RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-65
Identity = 141/206 (68.45%), Postives = 160/206 (77.67%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADVSPRAPFPKLKSAITGGASSTLAGGLKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   ADVSPRA  P+LKSAI G    +     KKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES----AKKTK 60

Query: 61  GRGFRE--DSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFG 120
           GRGFRE  DSDR  RL+  DF+SL S   PG QRS+EGWIILVSGVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 DFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGP 180
           DFGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AIS M+GAELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNTRPARERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]

BLAST of Carg25436 vs. Swiss-Prot
Match: sp|B7FAL5|Y14A_ORYSJ (RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.6e-50
Identity = 104/144 (72.22%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 60  RGFRED-SDRNTRLAG----SDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNA 119
           RGFR+D + R++RLAG    SDFDSL S  GPG  RSIEGWI+LV+GVHEEAQEDDL N 
Sbjct: 61  RGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHNI 120

Query: 120 FGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSR 179
           F DFG++KNLHLNLDRRTGFVKGYALIEYE+FEEA+ AI  +DG ELLTQII+VDWAFS 
Sbjct: 121 FRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFSN 180

Query: 180 GPIRRKNTRPARERRSRS-PRRRY 198
           GP++R+N R    RRSRS PRRRY
Sbjct: 181 GPVKRRNIRKRSPRRSRSPPRRRY 204

[Close]

BLAST of Carg25436 vs. Swiss-Prot
Match: sp|Q28BZ1|RBM8A_XENTR (RNA-binding protein 8A OS=Xenopus tropicalis OX=8364 GN=rbm8a PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.4e-37
Identity = 81/143 (56.64%), Postives = 104/143 (72.73%), Query Frame = 0


Query: 55  KKTKGRGFREDSDRNTRLAGSDFDSL-NSADGPGVQRSIEGWIILVSGVHEEAQEDDLQN 114
           KK KGRGF  D     R+   D+DS+    D PG QRS+EGWI+ V+GVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGADEGTRARIR-EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHD 92

Query: 115 AFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFS 174
            FG+FGEIKN+HLNLDRRTGF+KGYAL+EYE+++EA  A+  ++G +L+ Q I+VDW F 
Sbjct: 93  KFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFV 152

Query: 175 RGPIRRKNTRPARERRSRSPRRR 197
           RGP   K  R +  RRSRSP RR
Sbjct: 153 RGP--PKGKRRSGRRRSRSPERR 172

[Close]

BLAST of Carg25436 vs. Swiss-Prot
Match: sp|Q6ATR0|Y14B_ORYSJ (RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.7e-37
Identity = 84/149 (56.38%), Postives = 108/149 (72.48%), Query Frame = 0


Query: 53  GLKKTKGRGFREDSDRNTRLAGSD---FDSLNSADGP--GVQRSIEGWIILVSGVHEEAQ 112
           G+ +++GR       R+T +  S+   FDSL  A  P  G QRSIEGWI+LVSGV E+A+
Sbjct: 47  GVMRSRGRLL----GRSTSVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSGVKEDAE 106

Query: 113 EDDLQNAFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIIN 172
           EDDL N F DFG +K+LHLNL+RRTG+ KGYAL+EYESFEEA+ AI  M+G +LLT+ + 
Sbjct: 107 EDDLYNTFSDFGHVKDLHLNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQLLTRTVY 166

Query: 173 VDWAFSRGPIRRKNTRPARERRSRSPRRR 197
           VDWAFSRGPI++  +     RRSR+P RR
Sbjct: 167 VDWAFSRGPIQKLTSTRPLHRRSRTPPRR 191

[Close]

BLAST of Carg25436 vs. Swiss-Prot
Match: sp|Q9DF42|RB8AA_XENLA (RNA-binding protein 8A-A OS=Xenopus laevis OX=8355 GN=rbm8a-a PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-36
Identity = 80/143 (55.94%), Postives = 104/143 (72.73%), Query Frame = 0


Query: 55  KKTKGRGFREDSDRNTRLAGSDFDSL-NSADGPGVQRSIEGWIILVSGVHEEAQEDDLQN 114
           KK KGRGF  D    TR+    +DS+    D PG QRS+EGWI+ V+GVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGADEGTKTRIR-EVYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHD 92

Query: 115 AFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFS 174
            FG+FGEIKN+HLNLDRRTGF+KGYAL+EYE+++EA  A+  ++G +L+ Q ++VDW F 
Sbjct: 93  KFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFV 152

Query: 175 RGPIRRKNTRPARERRSRSPRRR 197
           RGP   K  R +  RRSRSP RR
Sbjct: 153 RGP--PKGKRRSGRRRSRSPERR 172

[Close]

BLAST of Carg25436 vs. TrEMBL
Match: tr|A0A1S3BNH9|A0A1S3BNH9_CUCME (RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 6.8e-96
Identity = 185/197 (93.91%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEAD SPRAPFPKLKSAITGGASS+L+GG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFRE+SDRNTRLAGSDFDSL SADGPG QRSIEGWIILV+GVHEEAQEDDLQNAFG+FGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFS GPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           N RPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. TrEMBL
Match: tr|A0A0A0M2V3|A0A0A0M2V3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 6.8e-96
Identity = 185/197 (93.91%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEAD SPRAPFPKLKSAITGGASS+L+GG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFRE+SDRNTRLAGSDFDSL SADGPG QRSIEGWIILV+GVHEEAQEDDLQNAFG+FGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFS GPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           N RPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. TrEMBL
Match: tr|A0A2C9UJD7|A0A2C9UJD7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G004400 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 5.8e-79
Identity = 161/199 (80.90%), Postives = 169/199 (84.92%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MA+AD EAVDFEPEEDDLMDEDGA + D SPRAP PKLKSAITGG+SS  A   +KTKGR
Sbjct: 1   MANADAEAVDFEPEEDDLMDEDGAVDVDASPRAPLPKLKSAITGGSSSLSAA--RKTKGR 60

Query: 61  GFRE--DSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDF 120
           GFRE  D+DR TRLA  DFDSL S  GPG QRSIEGWIILV+GVHEEAQEDDLQNAFGDF
Sbjct: 61  GFREEADADRQTRLASRDFDSLGSDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGDF 120

Query: 121 GEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIR 180
           GEIKNLHLNLDRRTGFVKGYALIEYE FEEA+ AIS M+G ELLTQIINVDWAF  GPIR
Sbjct: 121 GEIKNLHLNLDRRTGFVKGYALIEYEKFEEAQNAISAMNGTELLTQIINVDWAFINGPIR 180

Query: 181 RKNTRPARERRSRSPRRRY 198
           RKN R  R  RSRSPRRRY
Sbjct: 181 RKNMRSGRAHRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. TrEMBL
Match: tr|A0A067JH32|A0A067JH32_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25949 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.3e-78
Identity = 159/199 (79.90%), Postives = 170/199 (85.43%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MA+AD EAVDFEPEEDDLMDEDGA + D SPRAP PKLKSAITGGASS+L+   KKTKGR
Sbjct: 1   MANADAEAVDFEPEEDDLMDEDGAVDVDASPRAPLPKLKSAITGGASSSLSAP-KKTKGR 60

Query: 61  GFRE--DSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDF 120
           GFRE  D+DR  RLA  DFDSL +  GPG QRSIEGWIILV+GVHEEAQEDDLQNAFGDF
Sbjct: 61  GFREEADADRQNRLASRDFDSLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGDF 120

Query: 121 GEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIR 180
           GEIKNLHLNLDRRTGFVKGYALIEYE FEEA+ AIS M+G E+LTQIINVDWAF  GPI+
Sbjct: 121 GEIKNLHLNLDRRTGFVKGYALIEYEKFEEAQNAISAMNGTEILTQIINVDWAFCNGPIK 180

Query: 181 RKNTRPARERRSRSPRRRY 198
           RKN R  R  RSRSPRRRY
Sbjct: 181 RKNMRSGRAHRSRSPRRRY 198

[Close]

BLAST of Carg25436 vs. TrEMBL
Match: tr|A0A2C9VSX3|A0A2C9VSX3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G162200 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 2.2e-78
Identity = 160/199 (80.40%), Postives = 171/199 (85.93%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MA+AD EAVDFEPEEDDLMDEDGA + D SPRAP PKLKSAITGGASS+L+   +KTKGR
Sbjct: 1   MANADAEAVDFEPEEDDLMDEDGAVDVDNSPRAPLPKLKSAITGGASSSLSAP-RKTKGR 60

Query: 61  GFRE--DSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDF 120
           GFR+  D+DR +RLA  DFDSL S  GPG QRSIEGWIILVSGVHEEAQEDDLQNAFGDF
Sbjct: 61  GFRDEADADRQSRLASRDFDSLGSDGGPGPQRSIEGWIILVSGVHEEAQEDDLQNAFGDF 120

Query: 121 GEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIR 180
           GEIKNLHLNLDRRTGFVKGYALIE+E FEEA+ AI+ M GAELLTQIINVDWAF  GPIR
Sbjct: 121 GEIKNLHLNLDRRTGFVKGYALIEFEKFEEAQNAIAAMHGAELLTQIINVDWAFCNGPIR 180

Query: 181 RKNTRPARERRSRSPRRRY 198
           RKN R  R  RSRSPRRRY
Sbjct: 181 RKNMRSGRAHRSRSPRRRY 198

The following BLAST results are available for this feature:

BLAST of Carg25436 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529212.1	1.3e-101	99.49	RNA-binding protein Y14-like [Cucurbita pepo subsp. pepo]	[more]
XP_022931624.1	2.1e-101	99.49	RNA-binding protein Y14-like [Cucurbita moschata]	[more]
XP_022968337.1	2.1e-96	95.43	RNA-binding protein Y14-like [Cucurbita maxima]	[more]
XP_004139049.1	1.0e-95	93.91	PREDICTED: RNA-binding protein 8A-B [Cucumis sativus] >XP_008450386.1 PREDICTED:...	[more]
XP_022961208.1	1.1e-94	92.39	RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding pr...	[more]

BLAST of Carg25436 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G51510.1	9.4e-67	68.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G11400.2	5.2e-09	29.41	eukaryotic translation initiation factor 3G1	[more]
AT5G61030.1	2.0e-08	32.05	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	1.3e-07	35.44	glycine-rich RNA-binding protein 5	[more]
AT5G54580.1	1.3e-07	32.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg25436 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4I9J7\|Y14_ARATH	1.7e-65	68.45	RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1	[more]
sp\|B7FAL5\|Y14A_ORYSJ	7.6e-50	72.22	RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 S...	[more]
sp\|Q28BZ1\|RBM8A_XENTR	7.4e-37	56.64	RNA-binding protein 8A OS=Xenopus tropicalis OX=8364 GN=rbm8a PE=2 SV=1	[more]
sp\|Q6ATR0\|Y14B_ORYSJ	9.7e-37	56.38	RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 S...	[more]
sp\|Q9DF42\|RB8AA_XENLA	2.8e-36	55.94	RNA-binding protein 8A-A OS=Xenopus laevis OX=8355 GN=rbm8a-a PE=2 SV=1	[more]

BLAST of Carg25436 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNH9\|A0A1S3BNH9_CUCME	6.8e-96	93.91	RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1	[more]
tr\|A0A0A0M2V3\|A0A0A0M2V3_CUCSA	6.8e-96	93.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV=1	[more]
tr\|A0A2C9UJD7\|A0A2C9UJD7_MANES	5.8e-79	80.90	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G004400 PE=4 SV=...	[more]
tr\|A0A067JH32\|A0A067JH32_JATCU	1.3e-78	79.90	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25949 PE=4 SV=1	[more]
tr\|A0A2C9VSX3\|A0A2C9VSX3_MANES	2.2e-78	80.40	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G162200 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003729	mRNA binding
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR033744	RRM_RBM8
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR008111	RNA-bd_8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25436-RA	Carg25436-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008111	RNA-binding motif protein 8	PRINTS	PR01738	RNABINDINGM8	coord: 86..100 score: 67.33 coord: 142..158 score: 42.35 coord: 51..63 score: 50.77 coord: 160..172 score: 55.38
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 96..169 e-value: 1.4E-18 score: 77.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 97..161 e-value: 2.1E-15 score: 56.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 95..173 score: 15.681
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 8..192 e-value: 7.4E-29 score: 102.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..72
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 4..197
None	No IPR available	PANTHER	PTHR23139:SF97	SUBFAMILY NOT NAMED	coord: 4..197
IPR033744	RBM8, RNA recognition motif	CDD	cd12324	RRM_RBM8	coord: 89..176 e-value: 4.63593E-58 score: 178.95
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 92..196

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25436	Cla006324	Watermelon (97103) v1	carwmB0421
Carg25436	Csa1G616290	Cucumber (Chinese Long) v2	carcuB0457
Carg25436	MELO3C015160	Melon (DHL92) v3.5.1	carmeB0432
Carg25436	ClCG03G013000	Watermelon (Charleston Gray)	carwcgB0417
Carg25436	CSPI01G30610	Wild cucumber (PI 183967)	carcpiB0462
Carg25436	Cucsa.055310	Cucumber (Gy14) v1	carcgyB0491
Carg25436	CmaCh11G008620	Cucurbita maxima (Rimu)	carcmaB0590
Carg25436	CmaCh10G009140	Cucurbita maxima (Rimu)	carcmaB0589
Carg25436	CmoCh11G008720	Cucurbita moschata (Rifu)	carcmoB0575
Carg25436	CmoCh10G009550	Cucurbita moschata (Rifu)	carcmoB0574
Carg25436	Lsi06G005460	Bottle gourd (USVL1VR-Ls)	carlsiB385
Carg25436	Cp4.1LG18g01820	Cucurbita pepo (Zucchini)	carcpeB0595
Carg25436	Cp4.1LG04g12240	Cucurbita pepo (Zucchini)	carcpeB0596
Carg25436	CsGy1G029930	Cucumber (Gy14) v2	carcgybB0433
Carg25436	MELO3C015160.2	Melon (DHL92) v3.6.1	carmedB0434
Carg25436	CsaV3_1G043070	Cucumber (Chinese Long) v3	carcucB0458
Carg25436	Bhi02G001288	Wax gourd	carwgoB0510

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25436	Carg16925	Silver-seed gourd	carcarB439

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25436	Watermelon (97103) v2	carwmbB0448