Csa1G616290 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.GGGTTAGCGGGCAAACAAGAAACCCTTGTTTCGATCCCCAAAACCCCCCCTACCCTTTCTCCCATCCTCTTTCTTCTTCCCTCACCATTTTTTAAGAACCAACAACCAGCTCTGACCAACATTTGATTACCCATGGCGAGCGCTGATGTAGAGGCTGTCGACTTTGAGCCCGAGGAAGATGACCTCATGGACGAGGATGGAGCCGCCGAAGCCGATGCCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACCGGCGGCGCTTCTTCCTCGCTTTCTGGAGGTCCAAAGAAGACTAAGGGTCGTGGATTTCGAGAGGAGTCTGATCGAAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCTGATGGCCCTGGCCCCCAACGATGTTAGTTTTTCTGCTTCTCTCTTTCAGCATTTTTCTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCTTCTTTATTACTTTATTTTGGCAGATTGGCGTTTACCATTTTGTTTTGCTGGTTTTTTTTTATTCTTTGGTTCATTAGAGTTAGGGTTACGAAAATTTGGATGGTTATTTACTTGGTAGGTGGCGGGTTTAGATGTATTTGCCTGTATGTTCTACGATAGGTTGCTTTTTCACCTCCTTCAATTTAGTTAAGAGTAAGCAAATCCCTTCCTTGAGCTTGAAGAGGTCTTGCTTACTGTTAATGTCGGTTGGTTTACTCCCTTCGTTTCCACAATGTCACAGATCTTAGCTAGAACTTGATATGGAATTTAATTGTAAACGAAAAGGATTCAAGTGATGTTGTGTGAAATTATCGTGGAATACATATAGTAAGAGAAAGTTCAAAGATTGAGCCTGCATTGCCTTATATCCCCAAAGCGGTGCACTTTTTGGAAGGGGCTGAGGAGTAAAATCACTTTTACATTCATCTGCCACCACGCCTACTCCAGTCCTCCTTTAGCAATTTCCATTTTTCTTCTTCTGGGTGAACTGGATCAACTGTTAGCAAAGGGATTTACAGTGGTCTCTCTACTCTATCACGAGTAGCCACCCATTCAAGATAAGAAAAGAATGCTTACTGTTATAGTTTAACCTGATTAAAGTTGGTTTGTTGACTAAAATAAAGCCACCTCTGTTTTCTCTTACGATAAAATTCTCCCTGCTTATTTGGTTGCATTTGGGATGGCTAACACCATCTCCTTTTCTTGGAGGGTCCCTGTCAATAGCTTTGGATCTTTCTTCTGAGTGAGCATCAAAAGGATTATATCACAATATGGAAGTGTCTCTTTTATGTGGGGATTTGGTATAGATTTTGGAACACACTTAATTGATTGTCGTCTTAGATGGAGTATCATTTTCTATGCGTAGCTCTTCGTAAGAATCCTCATTACCTAAATGAAAGTTGGGTTTTCATTAGAAGTAACTGTCTGAGCTTTTCTTATGAATAATTTAGAATGAAACCACTGTATGTTTTTGGCAAAGAGACTGGAGAAATTGGTTTCTCTTTCTTGTATATTTTATTTTATTGGTTTCTCCCTGCCCCTTGTCCCTAGTTTGTTTCTTGCTCCTTTTAGTTTCTTATTAAAAAAAATTATATAAAAAAACATTTGTATATCTTTTCTTGGATCGTCTGGTGATGGGAAGGCCATGGGTGTCGGTGGAGAAAATGCTGTCCGTTCTCTCTTTTAAAAAATTTATAGTTTTAGTTGATAGACGATGTAGAAAGAAAATGAGGTTGCACCAGTGTCATCCTTTTCTTCTAACAATAGTGCCAGATTTCTTGTCTTATAAGTTATGAGGTCCACACCCATATTATCGAAGGTCTTAACTTTTTTAGAGGTGAGACCCATATTCTCTTTCTCTCTCTCTCTCTCTCTCTCTTGAAAATGAAATTAAAATTTTCATTGATAAAGTGAATTGAGATTAGCGCTCCAAAATATGAGGTATCTAAAGAAAAGACAAATAGAAGAGACAACCCAACTGATGAACAGTAGTCCAAGCCTGATGGGACGAAAAAATCAACCTCAAATTAACTCGTAGATGCAATATGTAACTAATGAATCTTTAACACTATTTGTGTAACTACCTCTCTTGAACATGTAAAAGGGGCCTTTATAATGTTAGCAAAGACTACTTTCTTAAAGGAAAAGTTCTCTTTTTTCTTGGTGGAAGTATAAGTGTACAACCTTGGCTTGTTTGATTCTTTCAAATGATCTCACTCTTCCGCTTTCCGAAGCCCCTTGAAAAGTTATTTAGATAATGGGGTTGGTTCAGCTGGGACGTTCAAATGATCTTACCTAGTTTCTTCCCCCTGTAAAGCCCCTCAAAAAGTTATTATGACAAAAATGACCATCATTTCTTTACCTAATTAAGGTCTCCATATTGGTTGCTTAAAACAAGACGATGCATCCCTTTTGTTCTCATGTGGGTTTGCATATGTTTCTTGTGCCAGGAGTGCAACCAAAGCCTCATTTGGACCGGGAGAAACCATGGTATATAGGCAAGGAGAAGAATCTCAACTGGTAGGAAGTTTCTTCATCTTCATTGTTTTAAAAAACTATTGAGGACTTGAGCCTTTGTGGAACCATAATAGGCTTACATCTCTCACAAATGATGCTTGCGCTTTTGTGAAAACACATTGAGGCTTACAATCTCTATGCCTCTCCTAGTGATTAGAAAAACAAAAGTGATTTGACTAGTTCTTCAAAAATATTAAGGCTTGAGTTGTGACAATTACTGTTGGGAACTTAAGAATGCTGAAAGCATATATGTATAGTATAAATCAATCCTCTTAGCAATAATAGTAAGAGTAATGATAAAGATCTTCTTTTAGAATTTTTTATTAACATTATGGGGGTGAAGTTTCTTTTTACAATTTTATAGGACTTGTATTTAACAATTCTTGATCATATCAATTTAGGTTTTGTAAAATGTTTTTAATTCATTGTTTGAGACTTACTTCTCATAACGCCTCGAGGCTTATGCCTTTCCTCTTGAAGAGGAAAAGTCTCAAGGCCACCTTTAGCCTGTCAAAACATTGATCTTTAATAAGCTGATGACAACATTGTTTTTCGCCGTAATGATGCCGATGCTCTTAATAATTGGTGGGAAATTTTGTATTTGTTTATGGCTGGTAATGGATTTCGTTGAATATTTCTAAGACTTTGTTGATTGGTACTAATGTGGGTAAGGAAGAAGTTGTTGAATGGGTTTTCGGTTGTTTTCTTTTGACTCCTTTTGTAGTAACACTCAATTCACAGCCTCTTGATGATGGACAAGAAACAGGAAATTCTTTTGGAATTTTAGCTTGTTCATGTTTCAATTGAACTGGAAAGCACTCTTAATACTCTTTTTGTTTTATTTTCTGAGGAAGGGGGTTCTGTCTTCCCCTTTCCTTTAGGATGTTCTTTTTTGAGCCTTTTTGTGCATAATACATATCTTGTTTCTTATCTTAAAAATGGTTATAGACTAATTCATATGGTCTTTTAACTAATATTCCTTAGATTAATACATTTAAGAAATATATTCCTTAGATGAATGTCTGATTCTAGTTACTTTGTGTAGCTATTGAAGGATGGATCATTCTGGTAACTGGTGTCCATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTCGTCAAGGTATATCTGATTCCTTTATTATTTAATTTCTCCCTAAAGAAACTAGAATTTTTGTAGTTTTTTAAGAAAAGAACATGCATATGTTTAATTATTTAATAGTTTTAGAAAGTAGAATAACTATAAAATTTCATATTTTGCTAATGATCGGATGATTTGTAAGAAGAATGAAATAGTATTGTAACTTTTAAATATTTGAAAACAATTTTTTCCCCTAAATTCTTTTGTCTCCCTTTTACTTTGTGACCTCACTCTTCTTGAAAGCACGGCAATTTGTTTTAATATTAAGCAAGGTGTGCCAAAATGTTCCTCACCTAATCTGGTGTACCTTTCCCCACCTTTTCCTATTTATTTATTTCTTTATTTTTGTTTGTCAAGTCTACCCATTGGGGCAATTATTTTCAAGCTCCACTTGATCTTGTTTGTCTCATTTTTTTTTATTAAATTAAATGGCGTTTCTTGTGAAAATTAATTACTCAAAAGGCTAACCTGAGGGTAGAGCTCAAGTGGTGACATGTTTGTAATTGTCTATAATGTTACACAAGTTTGAACCCTTACCTACTTCTATTCTATCGACACGCACACACCCATGCGCCCACACGCCCAAGCACACAATGCAAGCCTTTATTAGAGTCTGAATGGGACCTTGGGGGAGCCACCCTGCCAGATAATCTGTATGCTGGAATTTGAAACCTCTTTAGCCTTCATTTTAAAATGAAAAGTTTTGCTTCTGTTTAAGAAAAAAAAATCTTTCTTCGGTTTTTCGTGATGCCCATATTTGTGTTTTTTATTCTACAAATTGGCGGTATAATAAATTTTTTCATGCAAATATCTGGATTGAAATAACTTCATCTACAGGGTTGCCCTTCTCTTTCGTACTTGCATATCTCTGATTGAAAGTTGGTTCCTTATCCCAAAGTATTAAGTTACGGGGTATAATTTATTGCTTGAGATTATTTTTTATAACATCATCACCTTTCCCTTGCTAACCATGTAATTTTGCTTCCAACTAGCTTTAGATTTTACTCGTGATGTGTAGCTACTGTAAGAATACCATATTGTTTAGCAGATTCACATTTATTTTTCGTTTCCTGAGTTTTGTCTGAAACTGGAGCTATTTCCCTTCTTTTCCATAAATTTTGGAAATATTTATTTGTTTGTATAGGAAACCTTCTGTATGTTTCGATAATGCTTTTCCATAGTTTCGTTGAAGAAACATGAGCACGTTTTTATAGGTAACATAATGTTTGCATGGTTGTATATGTCACTTTGAGATCTGAATTATTTTGGTGACAGATGTTTGTATAGGTAAACATAATCCGCATTGCAACCATCTATTTTGCTGAAAAATCTGAGCATTACATTTTTTTAACCAACTAATTATCTATTCTAATATAAACATCTTGAATGAAATGGTGAGAAACTACCATTTGTGTTTTCGTTCTATCTTGTCTGTTTTATTGCTCTTGCTATTATATACACATATATGTACTTATATTTGTTTTGGGTTTATCAAGGGATATGCATTAATCGAATACGAGAGTTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGTGCTGAACTTCTGACCCAAATCATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACGCAAGGTATGCATCTCTAATATCTCTTCAAGATCTGCAAAGGGAATTATCAAATGAATGAATTATACAAAATTAATAAACCTTATGTAAAGTTTTGTTCTAATTTAATTGCAGACCTGCTCGAGAACGACGTTCGAGGAGCCCTAGGAGGAGATACTGA ATGGCGAGCGCTGATGTAGAGGCTGTCGACTTTGAGCCCGAGGAAGATGACCTCATGGACGAGGATGGAGCCGCCGAAGCCGATGCCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACCGGCGGCGCTTCTTCCTCGCTTTCTGGAGGTCCAAAGAAGACTAAGGGTCGTGGATTTCGAGAGGAGTCTGATCGAAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCTGATGGCCCTGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTAACTGGTGTCCATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTCGTCAAGGGATATGCATTAATCGAATACGAGAGTTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGTGCTGAACTTCTGACCCAAATCATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACGCAAGACCTGCTCGAGAACGACGTTCGAGGAGCCCTAGGAGGAGATACTGA ATGGCGAGCGCTGATGTAGAGGCTGTCGACTTTGAGCCCGAGGAAGATGACCTCATGGACGAGGATGGAGCCGCCGAAGCCGATGCCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACCGGCGGCGCTTCTTCCTCGCTTTCTGGAGGTCCAAAGAAGACTAAGGGTCGTGGATTTCGAGAGGAGTCTGATCGAAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCTGATGGCCCTGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTAACTGGTGTCCATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTCGTCAAGGGATATGCATTAATCGAATACGAGAGTTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGTGCTGAACTTCTGACCCAAATCATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACGCAAGACCTGCTCGAGAACGACGTTCGAGGAGCCCTAGGAGGAGATACTGA MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGRGFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNARPARERRSRSPRRRY*
BLAST of Csa1G616290 vs. Swiss-Prot
Match: RB8AB_XENLA (RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 8.4e-41 Identity = 97/194 (50.00%), Postives = 120/194 (61.86%), Query Frame = 1
BLAST of Csa1G616290 vs. Swiss-Prot
Match: RBM8A_XENTR (RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 2.4e-40 Identity = 97/194 (50.00%), Postives = 119/194 (61.34%), Query Frame = 1
BLAST of Csa1G616290 vs. Swiss-Prot
Match: RBM8A_DANRE (RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 5.4e-40 Identity = 82/143 (57.34%), Postives = 104/143 (72.73%), Query Frame = 1
BLAST of Csa1G616290 vs. Swiss-Prot
Match: RB8AA_XENLA (RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 1.2e-39 Identity = 96/194 (49.48%), Postives = 119/194 (61.34%), Query Frame = 1
BLAST of Csa1G616290 vs. Swiss-Prot
Match: RBM8A_SALSA (RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 2.1e-39 Identity = 94/194 (48.45%), Postives = 120/194 (61.86%), Query Frame = 1
BLAST of Csa1G616290 vs. TrEMBL
Match: A0A0A0M2V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G616290 PE=4 SV=1) HSP 1 Score: 394.8 bits (1013), Expect = 6.1e-107 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 1
BLAST of Csa1G616290 vs. TrEMBL
Match: A0A067JH32_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25949 PE=4 SV=1) HSP 1 Score: 326.2 bits (835), Expect = 2.7e-86 Identity = 165/199 (82.91%), Postives = 175/199 (87.94%), Query Frame = 1
BLAST of Csa1G616290 vs. TrEMBL
Match: B9RIF4_RICCO (Polyadenylate-binding protein, putative OS=Ricinus communis GN=RCOM_1578700 PE=4 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 1.6e-83 Identity = 161/200 (80.50%), Postives = 175/200 (87.50%), Query Frame = 1
BLAST of Csa1G616290 vs. TrEMBL
Match: D7U4F5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01140 PE=4 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 3.1e-82 Identity = 159/202 (78.71%), Postives = 175/202 (86.63%), Query Frame = 1
BLAST of Csa1G616290 vs. TrEMBL
Match: A0A061GTK7_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_040864 PE=4 SV=1) HSP 1 Score: 310.1 bits (793), Expect = 2.0e-81 Identity = 163/202 (80.69%), Postives = 175/202 (86.63%), Query Frame = 1
BLAST of Csa1G616290 vs. TAIR10
Match: AT1G51510.1 (AT1G51510.1 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 263.5 bits (672), Expect = 1.1e-70 Identity = 141/206 (68.45%), Postives = 159/206 (77.18%), Query Frame = 1
BLAST of Csa1G616290 vs. TAIR10
Match: AT5G64200.1 (AT5G64200.1 ortholog of human splicing factor SC35) HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09 Identity = 37/117 (31.62%), Postives = 60/117 (51.28%), Query Frame = 1
BLAST of Csa1G616290 vs. TAIR10
Match: AT5G52040.2 (AT5G52040.2 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 60.5 bits (145), Expect = 1.4e-09 Identity = 42/147 (28.57%), Postives = 74/147 (50.34%), Query Frame = 1
BLAST of Csa1G616290 vs. TAIR10
Match: AT4G25500.1 (AT4G25500.1 arginine/serine-rich splicing factor 35) HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08 Identity = 43/152 (28.29%), Postives = 73/152 (48.03%), Query Frame = 1
BLAST of Csa1G616290 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3) HSP 1 Score: 55.8 bits (133), Expect = 3.4e-08 Identity = 25/75 (33.33%), Postives = 44/75 (58.67%), Query Frame = 1
BLAST of Csa1G616290 vs. NCBI nr
Match: gi|449442559|ref|XP_004139049.1| (PREDICTED: RNA-binding protein 8A-B [Cucumis sativus]) HSP 1 Score: 394.8 bits (1013), Expect = 8.8e-107 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 1
BLAST of Csa1G616290 vs. NCBI nr
Match: gi|802764700|ref|XP_012090039.1| (PREDICTED: RNA-binding protein 8A [Jatropha curcas]) HSP 1 Score: 326.2 bits (835), Expect = 3.8e-86 Identity = 165/199 (82.91%), Postives = 175/199 (87.94%), Query Frame = 1
BLAST of Csa1G616290 vs. NCBI nr
Match: gi|255544924|ref|XP_002513523.1| (PREDICTED: RNA-binding protein 8A [Ricinus communis]) HSP 1 Score: 317.0 bits (811), Expect = 2.3e-83 Identity = 161/200 (80.50%), Postives = 175/200 (87.50%), Query Frame = 1
BLAST of Csa1G616290 vs. NCBI nr
Match: gi|225431497|ref|XP_002281228.1| (PREDICTED: RNA-binding protein 8A [Vitis vinifera]) HSP 1 Score: 312.8 bits (800), Expect = 4.4e-82 Identity = 159/202 (78.71%), Postives = 175/202 (86.63%), Query Frame = 1
BLAST of Csa1G616290 vs. NCBI nr
Match: gi|720043881|ref|XP_010269705.1| (PREDICTED: RNA-binding protein 8A-B [Nelumbo nucifera]) HSP 1 Score: 312.4 bits (799), Expect = 5.7e-82 Identity = 161/201 (80.10%), Postives = 178/201 (88.56%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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