Cucsa.053580 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.053580
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Actin-depolymerizing factor
Location	scaffold00581 : 602906 .. 605705 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGGAAATTGAGAGGATTGGCTAAGTCACTGGCTCTAACTCCCTTTCTCTTTCTCTTCTTTCTATATCTTCTGTCTTACCCTCCGATTCTTGCCTACCACTTCTGACCTTTCTCTTATTCCATCCTTCTTTCTCTTCTTTTTCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTTCTCAACTTTTACTCATCCCCTTTCTCACACCCACCTCTTCTCCGATCATCATGTCGTTCCGAGGCCTCCGACGGGTATCCTTCTTTATGTTCTTCCTTTTATCTTTTCTTTACTTTAAACTCAACTGGGTATCACCTTTTTTCAATTGGGGTTTCTGGGTTTTCTTCCAATTTAATCCTAATCATGTTTATCTCAATATTCTTAACCCCTGCTTCAAGTGAATCCTGCATTTTTCTGTATTTTGTGACCTTAATTTCTTTCTCTCCCCTCTTCTGTGATGGGGTTTAGTTTTGTTTCCTCAAGAATGGTGTTTTTTGTTTTCTTTCCTTTTTTTTCTCTTTGAGGCATAGTTCAAAAGATTAAAAGAGTACTGTGTATTCAGATGAAAAAAGTTGGACTAGAAAGATCCTGTCTTTGATTTAAGGTTCTTGTTTTAGCTCAGAAAGCTTTGATTTAAAGGGAAGAAGTCATGATCCTTACTGATCAGGTTTTGGTGGTGAAGGGTGGGGTCTAGTAAGTATATGGGTTATGATTTTTTGCCAGTCTGTTGATGGACTTCTGTCTCCTTTGAGTTCTATGATTTTTTAAGGAAAATTTCAACTCAAGATTATAAAATTAGAATCTATTGGGGTTCTCAGGATTAATCATGATGTTCTGCTTCTTAGTCAAATTCAACTTTTGGTAACAAGAAGAGAACTCAGTAATTGAATAATGTTATAGATCTATCTCATGGTTTAATTTTTAAGGGCTTCTTCTGCTGCTCTATTTTGTTGAGGATTCTTACTTTGTTGGCATCATTTCCTTTGAAATCTACTGATTTGGAAATTTCTACTCTTACCGTTAATTTTTTATGCTTCTTTCATGGATCTCTGCTTGGTTGTTTGACATTAATGAATTTACCTTTGTAGCAAAACACTTTATCTGCAATGGGTGTGAATGAACACACCAAGAAAACATTTTCTGAACTACAAAGAAAGAAAATGTATCGGTATGTGATCTTTAGGGTTGATGAAAAGAAAAGAGAGGTGGTGGTTGACAAGATTGGCAATCCTGCAGAGAGCTATGAAGATTTCACTGCTGCTCTGCCCGACAATGATTGCCGCTACGCTGTTTATGATTTTGATTTTGTGACATCCGACAATTGTCAGAAGAGCAAGATATTTTTCATAGCATGGTTAGCTTTCACCATCATTATACATCATGAACCTAATCTTATTTTTCTTACTGCTATATTAATGTCTATTGATCTGTATTATTCATTGGGTTGGCCCCATACAAAATTTTGGTCCATACTAAGGTAAACATTAGTTATCCCAAGGTCATAAGATTTTGATTCTATGATGACTATCATTTCTAAGCTCAGCCTCTAGGTTTTTCATGTTTCTAGTCAATTGCTCATTCATTGAACTGAAAAGCACTCATAAAGTGCTTCTTAGGCTTAGAACTTGGTTAATTTTATTGTGATATGTGTCGTTGATGCTTTTCTTTGACCTTCCTAAGGATATTTTCGTTATTTTTTGCTCTAGTTTGCCCATTCCAGTCTAAACTTTCTGTTCCTACAAATTTAACAAAGAAATGCATCAAATAACAAAATTTAACAGTAAAATCAATTAAGCCTAAGAAAAGACTGTTTTAGTGCTTTTAAGGAACTCATCTGGTGTACTTGCTAATTTCACTAAATACCTTCTTCGGGTGCATATGCTTTACTCTCCACACTGCAGAAGTTGGAGTTTAGTGGTTAGTTTAGTGGTTAGAGCTCTATATGCATCTTCTAATCTCGCTAAAGATCATAGTACATCAAAAGTTTTGGGCAAAACTTGAAGATCTTGTCATATTTTGTCAGAATAATTCTCCTTTTTGTTGATGATCTAGTGCACTCGTCGAATATCTTATTCTGAGAACCATTTAAGTTTTGACCTTGATTAGAAACAACAGGAATAGTTTTAATCATGTCATACCAATGATTATCGTGGGGTATCTTTTCTCTCTTGATCTCACACTACATTGTTGTACTTCAGGTCTCCAGCTAGCTCACGAATCCGTGCTAAGATGCTCTATGCAACATCCAAAGACAACTTTCGGCACGAGCTTGATGGCATCCACTATGAAATTCAAGCTACTGACCCTGCAGAGATGGACCTGGAAGTGATCAGAGACCGTGCTCAATGAACATTCTCTGTTTGTTTAATTTGTTGTTCCCTTGGGGGTAAGCTGCCTTGTATTTTGGTTACTTATGAATTGGTTTATCCCTGCTTCAATATGTGTAAAACCGATCGTTGGAAAATGAAACCATTGCACAAAACCGTAAAATAAACTAACATCTGCAGAATGCTGATATATGGTGGATCGACATGATGTTGCTGTCTGGTTGCTATGAATGCTTCTCAGATGAAGATAAGTTTGTAATAGAAAATGCCTTAGAATCTATCAAACCTTATTATCATTGGAAATTTGTTCTATGATGGATCTGCCCCAATGTCTGGTTTTTTTCATTATGCCTTTAGAATTTGCACTTTATGATGTGAAATGAAGAACACGACTCGGTGTACCTCGGACATGGCA

mRNA sequence

GTTGGGAAATTGAGAGGATTGGCTAAGTCACTGGCTCTAACTCCCTTTCTCTTTCTCTTCTTTCTATATCTTCTGTCTTACCCTCCGATTCTTGCCTACCACTTCTGACCTTTCTCTTATTCCATCcttctttctcttctttttccttttcttcttcttcttcttcttcttcttcattttctCAACTTTTACTCATCCCCTTTCTCACACCCACCTCTTCTCCGATCATCATGTCGTTCCGAGGCCTCCGACGGGTATCCTTCTTTATGTTCTTCCTTTTATCTTTTCTTTACTTTAAACTCAACTGGGTATCACCTTTTTTCAATTGGGGTTTCTGGGTTTTCTTCCAATTTAATCCTAATCATGTTTATCTCAATATTCTTAACCCCTGCTTCAAGTGAATCCTGCATTTTTCTGTATTTTGTGACCTTAATTTCTTTCTCTCCCCTCTTCTGTGATGGGGTTTAGTTTTGTTTCCTCAAGAATGGTGTTTTTTGTTTTCTTTCCTTTTTTTTCTCTTTGAGGCATAGTTCAAAAGATTAAAAGAGTACTGTGTATTCAGATGAAAAAAGTTGGACTAGAAAGATCCTGTCTTTGATTTAAGGTTCTTGTTTTAGCTCAGAAAGCTTTGATTTAAAGGGAAGAAGTCATGATCCTTACTGATCAGGTTTTGGTGGTGAAGGGTGGGGTCTAGTAAGTATATGGGTTATGATTTTTTGCCAGTCTGTTGATGGACTTCTGTCTCCTTTGAGTTCTATGATTTTTTAAGGAAAATTTCAACTCAAGATTATAAAATTAGAATCTATTGGGGTTCTCAGGATTAATCATGATGTTCTGCTTCTTAGTCAAATTCAACTTTTGGTAACAAGAAGAGAACTCAGTAATTGAATAATGTTATAGATCTATCTCATGGTTTAATTTTTAAGGGCTTCTTCTGCTGCTCTATTTTGTTGAGGATTCTTACTTTGTTGGCATCATTTCCTTTGAAATCTACTGATTTGGAAATTTCTACTCTTACCGTTAATTTTTTATGCTTCTTTCATGGATCTCTGCTTGGTTGTTTGACATTAATGAATTTACCTTTGTAGCAAAACACTTTATCTGCAATGGGTGTGAATGAACACACCAAGAAAACATTTTCTGAACTACAAAGAAAGAAAATGTATCGGTATGTGATCTTTAGGGTTGATGAAAAGAAAAGAGAGGTGGTGGTTGACAAGATTGGCAATCCTGCAGAGAGCTATGAAGATTTCACTGCTGCTCTGCCCGACAATGATTGCCGCTACGCTGTTTATGATTTTGATTTTGTGACATCCGACAATTGTCAGAAGAGCAAGATATTTTTCATAGCATGGTCTCCAGCTAGCTCACGAATCCGTGCTAAGATGCTCTATGCAACATCCAAAGACAACTTTCGGCACGAGCTTGATGGCATCCACTATGAAATTCAAGCTACTGACCCTGCAGAGATGGACCTGGAAGTGATCAGAGACCGTGCTCAATGAACATTCTCTGTTTGTTTAATTTGTTGTTCCCTTGGGGAATGCTGATATATGGTGGATCGACATGATGTTGCTGTCTGGTTGCTATGAATGCTTCTCAGATGAAGATAAGTTTGTAATAGAAAATGCCTTAGAATCTATCAAACCTTATTATCATTGGAAATTTGTTCTATGATGGATCTGCCCCAATGTCTGGTTTTTTTCATTATGCCTTTAGAATTTGCACTTTATGATGTGAAATGAAGAACACGACTCGGTGTACCTCGGACATGGCA

Coding sequence (CDS)

ATGGGTGTGAATGAACACACCAAGAAAACATTTTCTGAACTACAAAGAAAGAAAATGTATCGGTATGTGATCTTTAGGGTTGATGAAAAGAAAAGAGAGGTGGTGGTTGACAAGATTGGCAATCCTGCAGAGAGCTATGAAGATTTCACTGCTGCTCTGCCCGACAATGATTGCCGCTACGCTGTTTATGATTTTGATTTTGTGACATCCGACAATTGTCAGAAGAGCAAGATATTTTTCATAGCATGGTCTCCAGCTAGCTCACGAATCCGTGCTAAGATGCTCTATGCAACATCCAAAGACAACTTTCGGCACGAGCTTGATGGCATCCACTATGAAATTCAAGCTACTGACCCTGCAGAGATGGACCTGGAAGTGATCAGAGACCGTGCTCAATGA

Protein sequence

MGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESYEDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYEIQATDPAEMDLEVIRDRAQ*

Homology

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BLAST of Cucsa.053580 vs. Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.7e-60
Identity = 111/145 (76.55%), Postives = 129/145 (88.97%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRGL   N  S MGV +H+K TF EL+RKK++RYVIF++DEKK+EVVV+K G PAES+
Sbjct: 1   MSFRGL---NASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESF 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           ++F AALP+NDCRYAVYDFDFVTS+NCQKSKIFFIAWSP SSRIRAKMLYATSK+ FR E
Sbjct: 61  DEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           LDG+HYEIQATDP EMDLEV+R+RA
Sbjct: 121 LDGVHYEIQATDPTEMDLEVLRERA 142

[Close]

BLAST of Cucsa.053580 vs. Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.5e-58
Identity = 105/145 (72.41%), Postives = 124/145 (85.52%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRGL R N +S MGV + +K TF ELQRKK +RYV+F++DE K+EVVV+K GNP ESY
Sbjct: 1   MSFRGLSRPNAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           +DF A+LPDNDCRYAVYDFDFVTS+NCQKSKIFF AWSP++S IRAK+LY+TSKD    E
Sbjct: 61  DDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           L GIHYEIQATDP E+DLEV+R+RA
Sbjct: 121 LQGIHYEIQATDPTEVDLEVLRERA 145

[Close]

BLAST of Cucsa.053580 vs. Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-51
Identity = 92/138 (66.67%), Postives = 118/138 (85.51%), Query Frame = 1


Query: 8   RQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESYEDFTAAL 67
           R N  S +GV    K+TF ELQRKK +RYVIF++D+K +EVVV+K G+  ES++DF  +L
Sbjct: 7   RANASSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSL 66

Query: 68  PDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYE 127
           P++DCRYA+YDFDFVT +NCQKSKIFF+AWSP+ SRIRAKMLYATSK+ FR ELDG+HYE
Sbjct: 67  PESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYE 126

Query: 128 IQATDPAEMDLEVIRDRA 146
           IQATDP+E+D+E++R+RA
Sbjct: 127 IQATDPSELDIELLRERA 144

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BLAST of Cucsa.053580 vs. Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 7.3e-50
Identity = 92/136 (67.65%), Postives = 113/136 (83.09%), Query Frame = 1


Query: 10  NTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESYEDFTAALPD 69
           N  S MGV    + TF ELQ KK +RYVIF+++EK+++VVV+K G   ESY+DF A+LP+
Sbjct: 9   NASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPE 68

Query: 70  NDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYEIQ 129
           NDCRYA+YDFDFVT +N QKSKIFFIAWSP++SRIRAKMLY+TSKD  + ELDG HYEIQ
Sbjct: 69  NDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQ 128

Query: 130 ATDPAEMDLEVIRDRA 146
           ATDP E+DLEV+R+RA
Sbjct: 129 ATDPTEVDLEVLRERA 144

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BLAST of Cucsa.053580 vs. Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 8.9e-48
Identity = 85/129 (65.89%), Postives = 111/129 (86.05%), Query Frame = 1


Query: 17  VNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESYEDFTAALPDNDCRYAV 76
           V E +K  F EL+R+K++RYVIF++D+++ E+VV+K G P ESY+DFTA+LP +DCRYAV
Sbjct: 20  VPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAV 79

Query: 77  YDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYEIQATDPAEM 136
           YD DFV+ DNC+KSKIFFI+WSP+ SRIRAK +YA S++ FRHELDG+H+EIQATDP +M
Sbjct: 80  YDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDM 139

Query: 137 DLEVIRDRA 146
           DLEV+R RA
Sbjct: 140 DLEVLRGRA 148

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BLAST of Cucsa.053580 vs. TrEMBL
Match: A0A0A0L7Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G389830 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 7.6e-78
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 147
           LDGIHYEIQATDPAEMDLEVIRDRAQ
Sbjct: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 146

[Close]

BLAST of Cucsa.053580 vs. TrEMBL
Match: M5VQ33_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012988mg PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.0e-63
Identity = 119/145 (82.07%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRGL R N   AMGV++ +K TF ELQRKK++RYVIF+VDEKKREVVV+KIG PAESY
Sbjct: 1   MSFRGLSRPNASCAMGVSDDSKNTFMELQRKKVHRYVIFKVDEKKREVVVEKIGGPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           +DF AALP+NDCRYAVYDFDFVTS+NCQKSKIFFIAWSP++SRIRAKMLYATSKD FR E
Sbjct: 61  DDFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           LDGIHYEIQATDP+EMDLEV+RDRA
Sbjct: 121 LDGIHYEIQATDPSEMDLEVLRDRA 145

[Close]

BLAST of Cucsa.053580 vs. TrEMBL
Match: A0A061DNR6_THECC (Actin depolymerizing factor 6 isoform 1 OS=Theobroma cacao GN=TCM_004049 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.6e-62
Identity = 117/145 (80.69%), Postives = 130/145 (89.66%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRGL R N  S MGV +H+K TF EL+RKK+YRYVIF++DEKKREVVV+K G P ESY
Sbjct: 1   MSFRGLSRPNATSGMGVADHSKDTFLELKRKKVYRYVIFKIDEKKREVVVEKTGGPVESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           +DFTA+LP+NDCRYAVYDFDFVTS+NCQKSKIFFIAWSP+SSRIRAKMLYATSKD FR E
Sbjct: 61  DDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSSSRIRAKMLYATSKDRFRRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           LDGIHYEIQATD  EMDLEV+RDRA
Sbjct: 121 LDGIHYEIQATDATEMDLEVLRDRA 145

[Close]

BLAST of Cucsa.053580 vs. TrEMBL
Match: D6BR51_JATCU (Actin-depolymerizing factor 6 OS=Jatropha curcas GN=JCGZ_17698 PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 7.6e-62
Identity = 116/145 (80.00%), Postives = 130/145 (89.66%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRGL R N  S MGV +H+  TF ELQRKK++RYV+FR+DEKK+EVVV+K G PAESY
Sbjct: 1   MSFRGLSRPNATSGMGVADHSINTFLELQRKKVHRYVVFRIDEKKKEVVVEKTGGPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           EDF A+LP+NDCRYAVYDFDFVTS+NCQKSKIFFIAWSP++SRIRAKMLYATSKD FR E
Sbjct: 61  EDFAASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           LDGIHYEIQATDP EMDLEVIR+RA
Sbjct: 121 LDGIHYEIQATDPTEMDLEVIRERA 145

[Close]

BLAST of Cucsa.053580 vs. TrEMBL
Match: A9PAH1_POPTR (Actin-depolymerizing factor 6 family protein OS=Populus trichocarpa GN=POPTR_0002s03990g PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.7e-61
Identity = 116/145 (80.00%), Postives = 130/145 (89.66%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRG  R N  S MGV +H+K  F ELQRKK++RYVIF++DEKK+EVVV+K G PAESY
Sbjct: 1   MSFRGASRPNASSGMGVADHSKIAFVELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           EDFTA+LP+NDCRYAVYDFDFVTS+NCQKSKIFFIAWSP++SRIRAKMLYATSKD FR E
Sbjct: 61  EDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           LDGIHYEIQATDP EMDLEVIR+RA
Sbjct: 121 LDGIHYEIQATDPTEMDLEVIRERA 145

[Close]

BLAST of Cucsa.053580 vs. TAIR10
Match: AT2G31200.1 (AT2G31200.1 actin depolymerizing factor 6)

HSP 1 Score: 226.1 bits (575), Expect = 1.4e-59
Identity = 105/145 (72.41%), Postives = 124/145 (85.52%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRGL R N +S MGV + +K TF ELQRKK +RYV+F++DE K+EVVV+K GNP ESY
Sbjct: 1   MSFRGLSRPNAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           +DF A+LPDNDCRYAVYDFDFVTS+NCQKSKIFF AWSP++S IRAK+LY+TSKD    E
Sbjct: 61  DDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           L GIHYEIQATDP E+DLEV+R+RA
Sbjct: 121 LQGIHYEIQATDPTEVDLEVLRERA 145

[Close]

BLAST of Cucsa.053580 vs. TAIR10
Match: AT4G00680.1 (AT4G00680.1 actin depolymerizing factor 8)

HSP 1 Score: 188.3 bits (477), Expect = 3.3e-48
Identity = 80/135 (59.26%), Postives = 113/135 (83.70%), Query Frame = 1


Query: 10  NTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESYEDFTAALPD 69
           N+ S M VN+  K  F EL+ K+ YR+++F++DEK ++V ++K+GNP E+Y+DFT+++PD
Sbjct: 3   NSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPD 62

Query: 70  NDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYEIQ 129
           ++CRYAVYDFDF T DNCQKSKIFFIAWSP +SR+R+KMLYA+SKD F+ E++GI  E+Q
Sbjct: 63  DECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQ 122

Query: 130 ATDPAEMDLEVIRDR 145
           ATDP+EM L++I+ R
Sbjct: 123 ATDPSEMSLDIIKGR 137

[Close]

BLAST of Cucsa.053580 vs. TAIR10
Match: AT1G01750.1 (AT1G01750.1 actin depolymerizing factor 11)

HSP 1 Score: 187.2 bits (474), Expect = 7.3e-48
Identity = 80/135 (59.26%), Postives = 113/135 (83.70%), Query Frame = 1


Query: 10  NTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESYEDFTAALPD 69
           N+ S M V++  K  F EL+ K+ YR+++F++DEK ++V++DK+GNP E+YEDFT ++P+
Sbjct: 3   NSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPE 62

Query: 70  NDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYEIQ 129
           ++CRYAVYD+DF T +NCQKSKIFFIAWSP +SR+R+KMLYA+SKD F+ ELDGI  E+Q
Sbjct: 63  DECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQ 122

Query: 130 ATDPAEMDLEVIRDR 145
           ATDP+EM L++I+ R
Sbjct: 123 ATDPSEMSLDIIKGR 137

[Close]

BLAST of Cucsa.053580 vs. TAIR10
Match: AT4G25590.1 (AT4G25590.1 actin depolymerizing factor 7)

HSP 1 Score: 181.8 bits (460), Expect = 3.1e-46
Identity = 83/136 (61.03%), Postives = 109/136 (80.15%), Query Frame = 1


Query: 10  NTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESYEDFTAALPD 69
           N  S M V +  K  F EL+ K+ YR++IFR+D   ++VVV+K+GNP E+Y+DFTA+LP 
Sbjct: 3   NAASGMAVEDECKLKFLELKSKRNYRFIIFRIDG--QQVVVEKLGNPDETYDDFTASLPA 62

Query: 70  NDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHYEIQ 129
           N+CRYAV+DFDF+T +NCQKSKIFFIAWSP SSR+R KM+YA+SKD F+ ELDGI  E+Q
Sbjct: 63  NECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQ 122

Query: 130 ATDPAEMDLEVIRDRA 146
           ATDP+EM  ++I+ RA
Sbjct: 123 ATDPSEMSFDIIKSRA 136

[Close]

BLAST of Cucsa.053580 vs. TAIR10
Match: AT3G46010.2 (AT3G46010.2 actin depolymerizing factor 1)

HSP 1 Score: 180.3 bits (456), Expect = 8.9e-46
Identity = 77/139 (55.40%), Postives = 111/139 (79.86%), Query Frame = 1


Query: 7   RRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESYEDFTAA 66
           R  N  S M V++  K  F EL+ K+ +R+++++++EK+++VVV+K+G P ++YE+F A 
Sbjct: 11  RSANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAAC 70

Query: 67  LPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHELDGIHY 126
           LP ++CRYA+YDFDFVT++NCQKSKIFFIAW P  +++R+KM+YA+SKD F+ ELDGI  
Sbjct: 71  LPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQV 130

Query: 127 EIQATDPAEMDLEVIRDRA 146
           E+QATDP EMDL+V R RA
Sbjct: 131 ELQATDPTEMDLDVFRSRA 149

[Close]

BLAST of Cucsa.053580 vs. NCBI nr
Match: gi|449468548|ref|XP_004151983.1| (PREDICTED: actin-depolymerizing factor [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.1e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 147
           LDGIHYEIQATDPAEMDLEVIRDRAQ
Sbjct: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 146

[Close]

BLAST of Cucsa.053580 vs. NCBI nr
Match: gi|659093222|ref|XP_008447430.1| (PREDICTED: actin-depolymerizing factor [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 2.4e-77
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIF+VDEKKREVVVDKIGNPAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 147
           LDGIHYEIQATDPAEMDLEVIRDRAQ
Sbjct: 121 LDGIHYEIQATDPAEMDLEVIRDRAQ 146

[Close]

BLAST of Cucsa.053580 vs. NCBI nr
Match: gi|645260128|ref|XP_008235687.1| (PREDICTED: actin-depolymerizing factor [Prunus mume])

HSP 1 Score: 250.8 bits (639), Expect = 1.5e-63
Identity = 120/145 (82.76%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRGL R N   AMGV++ +KKTF ELQRKK++RYVIF+VDEKKREVVV+KIG PAESY
Sbjct: 1   MSFRGLSRPNASCAMGVSDDSKKTFMELQRKKVHRYVIFKVDEKKREVVVEKIGGPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           +DF AALP+NDCRYAVYDFDFVTS+NCQKSKIFFIAWSP++SRIRAKMLYATSKD FR E
Sbjct: 61  DDFVAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           LDGIHYEIQATDP+EMDLEV+RDRA
Sbjct: 121 LDGIHYEIQATDPSEMDLEVLRDRA 145

[Close]

BLAST of Cucsa.053580 vs. NCBI nr
Match: gi|694387478|ref|XP_009369488.1| (PREDICTED: actin-depolymerizing factor [Pyrus x bretschneideri])

HSP 1 Score: 249.2 bits (635), Expect = 4.4e-63
Identity = 119/145 (82.07%), Postives = 132/145 (91.03%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRGL R N   AMGV++ +K TF ELQRKK++RYVIF+VDEKKREVVV+KIG PAESY
Sbjct: 1   MSFRGLGRPNASCAMGVSDESKNTFMELQRKKLHRYVIFKVDEKKREVVVEKIGGPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           +DF AALPDNDCRYAVYDFDFVTS+NCQKSKIFFIAWSP+++RIRAKMLYATSKD FR E
Sbjct: 61  DDFVAALPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPSTARIRAKMLYATSKDRFRRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           LDGIHYEIQATDP EMDLEV+RDRA
Sbjct: 121 LDGIHYEIQATDPTEMDLEVLRDRA 145

[Close]

BLAST of Cucsa.053580 vs. NCBI nr
Match: gi|595801654|ref|XP_007201857.1| (hypothetical protein PRUPE_ppa012988mg [Prunus persica])

HSP 1 Score: 248.8 bits (634), Expect = 5.8e-63
Identity = 119/145 (82.07%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFRVDEKKREVVVDKIGNPAESY 60
           MSFRGL R N   AMGV++ +K TF ELQRKK++RYVIF+VDEKKREVVV+KIG PAESY
Sbjct: 1   MSFRGLSRPNASCAMGVSDDSKNTFMELQRKKVHRYVIFKVDEKKREVVVEKIGGPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWSPASSRIRAKMLYATSKDNFRHE 120
           +DF AALP+NDCRYAVYDFDFVTS+NCQKSKIFFIAWSP++SRIRAKMLYATSKD FR E
Sbjct: 61  DDFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRE 120

Query: 121 LDGIHYEIQATDPAEMDLEVIRDRA 146
           LDGIHYEIQATDP+EMDLEV+RDRA
Sbjct: 121 LDGIHYEIQATDPSEMDLEVLRDRA 145

The following BLAST results are available for this feature:

BLAST of Cucsa.053580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ADF_VITVI	2.7e-60	76.55	Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1	[more]
ADF6_ARATH	2.5e-58	72.41	Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1	[more]
ADF11_ORYSJ	1.3e-51	66.67	Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=...	[more]
ADF2_ORYSJ	7.3e-50	67.65	Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1	[more]
ADF10_ORYSJ	8.9e-48	65.89	Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=...	[more]

BLAST of Cucsa.053580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7Z2_CUCSA	7.6e-78	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G389830 PE=3 SV=1	[more]
M5VQ33_PRUPE	4.0e-63	82.07	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012988mg PE=3 SV=1	[more]
A0A061DNR6_THECC	2.6e-62	80.69	Actin depolymerizing factor 6 isoform 1 OS=Theobroma cacao GN=TCM_004049 PE=3 SV...	[more]
D6BR51_JATCU	7.6e-62	80.00	Actin-depolymerizing factor 6 OS=Jatropha curcas GN=JCGZ_17698 PE=2 SV=1	[more]
A9PAH1_POPTR	1.7e-61	80.00	Actin-depolymerizing factor 6 family protein OS=Populus trichocarpa GN=POPTR_000...	[more]

BLAST of Cucsa.053580 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31200.1	1.4e-59	72.41	actin depolymerizing factor 6	[more]
AT4G00680.1	3.3e-48	59.26	actin depolymerizing factor 8	[more]
AT1G01750.1	7.3e-48	59.26	actin depolymerizing factor 11	[more]
AT4G25590.1	3.1e-46	61.03	actin depolymerizing factor 7	[more]
AT3G46010.2	8.9e-46	55.40	actin depolymerizing factor 1	[more]

BLAST of Cucsa.053580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468548\|ref\|XP_004151983.1\|	1.1e-77	100.00	PREDICTED: actin-depolymerizing factor [Cucumis sativus]	[more]
gi\|659093222\|ref\|XP_008447430.1\|	2.4e-77	99.32	PREDICTED: actin-depolymerizing factor [Cucumis melo]	[more]
gi\|645260128\|ref\|XP_008235687.1\|	1.5e-63	82.76	PREDICTED: actin-depolymerizing factor [Prunus mume]	[more]
gi\|694387478\|ref\|XP_009369488.1\|	4.4e-63	82.07	PREDICTED: actin-depolymerizing factor [Pyrus x bretschneideri]	[more]
gi\|595801654\|ref\|XP_007201857.1\|	5.8e-63	82.07	hypothetical protein PRUPE_ppa012988mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002108	ADF-H
IPR017904	ADF/Cofilin
IPR002108	ADF-H
IPR017904	ADF/Cofilin
IPR002108	ADF-H
IPR017904	ADF/Cofilin

Vocabulary: **Molecular Function**
Term	Definition
GO:0003779	actin binding
GO:0003779	actin binding
GO:0003779	actin binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0015629	actin cytoskeleton
GO:0005622	intracellular
GO:0015629	actin cytoskeleton
GO:0005622	intracellular
GO:0015629	actin cytoskeleton

Vocabulary: **Biological Process**
Term	Definition
GO:0030042	actin filament depolymerization
GO:0030042	actin filament depolymerization
GO:0030042	actin filament depolymerization

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030042	actin filament depolymerization
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003779	actin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.053580.3	Cucsa.053580.3	mRNA
Cucsa.053580.2	Cucsa.053580.2	mRNA
Cucsa.053580.1	Cucsa.053580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002108	Actin-depolymerising factor homology domain	PFAM	PF00241	Cofilin_ADF	coord: 8..129 score: 4.3
IPR002108	Actin-depolymerising factor homology domain	SMART	SM00102	adf_2	coord: 5..132 score: 2.9
IPR002108	Actin-depolymerising factor homology domain	PROFILE	PS51263	ADF_H	coord: 1..132 score: 39
IPR017904	ADF/Cofilin/Destrin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 1..132 score: 8.5
None	No IPR available	PANTHER	PTHR11913:SF20	ACTIN-DEPOLYMERIZING FACTOR 6	coord: 1..132 score: 8.5
None	No IPR available	unknown	SSF55753	Actin depolymerizing proteins	coord: 2..130 score: 1.31

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.053580	Cla005983	Watermelon (97103) v1	cgywmB039
Cucsa.053580	Csa3G389830	Cucumber (Chinese Long) v2	cgycuB037
Cucsa.053580	MELO3C012894	Melon (DHL92) v3.5.1	cgymeB035
Cucsa.053580	ClCG07G001020	Watermelon (Charleston Gray)	cgywcgB042
Cucsa.053580	CSPI03G22580	Wild cucumber (PI 183967)	cgycpiB038
Cucsa.053580	CmaCh19G000870	Cucurbita maxima (Rimu)	cgycmaB0063
Cucsa.053580	CmaCh02G017500	Cucurbita maxima (Rimu)	cgycmaB0064
Cucsa.053580	CmoCh02G017910	Cucurbita moschata (Rifu)	cgycmoB0060
Cucsa.053580	CmoCh19G001000	Cucurbita moschata (Rifu)	cgycmoB0059
Cucsa.053580	Lsi05G010150	Bottle gourd (USVL1VR-Ls)	cgylsiB040
Cucsa.053580	Cp4.1LG15g00760	Cucurbita pepo (Zucchini)	cgycpeB0058
Cucsa.053580	Cp4.1LG05g01070	Cucurbita pepo (Zucchini)	cgycpeB0060
Cucsa.053580	MELO3C012894.2	Melon (DHL92) v3.6.1	cgymedB034
Cucsa.053580	CsaV3_3G022330	Cucumber (Chinese Long) v3	cgycucB039
Cucsa.053580	Cla97C07G129300	Watermelon (97103) v2	cgywmbB039
Cucsa.053580	Bhi05G000156	Wax gourd	cgywgoB040
Cucsa.053580	Carg16876	Silver-seed gourd	carcgyB0841
Cucsa.053580	Carg08967	Silver-seed gourd	carcgyB0881

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.053580	Watermelon (97103) v2	cgywmbB038