Cucsa.050140 (gene) Cucumber (Gy14) v1

NameCucsa.050140
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionProtease inhibitor/seed storage/lipid transfer protein family protein
Locationscaffold00551 : 225278 .. 225885 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGTATTCAAAGATGAAACAGGCGATCTTCAAGCCTCTGGAGTTTCTGGTGTTCATGTTGGCAATTACATCCTTTCTAGGGCAAGCTAAAGCCAAGTTCTGTTCTAACAGTCTAATTTACTCTCTTGTTCAGCTAATTCCTTGTAGGCCTTCACTGTCTCCATTCCACCCTATACCACCAAGTCTTGTCTGTTGCGATGCTATCAAAACTTTAGGCCAGTCTTGTATTTGTGCGTTGTTGGATGCTCCCCCTGTTTCTGGTGTTGATTATAACTTGGCCATGTCTCTGCCTCAGAAATGCGCTGCAAATTTCGAGCCATGTAACTATTTCTCCTTGCTTCTTGATCTCTCTACATTTTTCTAGTTTTTGTGTTGAAGATTCTTGAGAAACTTGGTTTCTAATGCAGGTTTCTAGAAGTTGGGACGATGGTGGGGTGTGTGAAGATGATGAATAACGCTGCTTATGATGTTTAGATAGATGTCATGGTTGGATATATGTTTAAGTTAAGAATAACTATGTTTGTTTCAACTTTGGAATGAGAACGACTTTAGAAATTCTTAGAGGTGCTTCATATCTCATTGGTTGAAAGATGAGTTTGGTGAGTGAT

mRNA sequence

TCTGTATTCAAAGATGAAACAGGCGATCTTCAAGCCTCTGGAGTTTCTGGTGTTCATGTTGGCAATTACATCCTTTCTAGGGCAAGCTAAAGCCAAGTTCTGTTCTAACAGTCTAATTTACTCTCTTGTTCAGCTAATTCCTTGTAGGCCTTCACTGTCTCCATTCCACCCTATACCACCAAGTCTTGTCTGTTGCGATGCTATCAAAACTTTAGGCCAGTCTTGTATTTGTGCGTTGTTGGATGCTCCCCCTGTTTCTGGTGTTGATTATAACTTGGCCATGTCTCTGCCTCAGAAATGCGCTGCAAATTTCGAGCCATGTTTCTAGAAGTTGGGACGATGGTGGGGTGTGTGAAGATGATGAATAACGCTGCTTATGATGTTTAGATAGATGTCATGGTTGGATATATGTTTAAGTTAAGAATAACTATGTTTGTTTCAACTTTGGAATGAGAACGACTTTAGAAATTCTTAGAGGTGCTTCATATCTCATTGGTTGAAAGATGAGTTTGGTGAGTGAT

Coding sequence (CDS)

ATGAAACAGGCGATCTTCAAGCCTCTGGAGTTTCTGGTGTTCATGTTGGCAATTACATCCTTTCTAGGGCAAGCTAAAGCCAAGTTCTGTTCTAACAGTCTAATTTACTCTCTTGTTCAGCTAATTCCTTGTAGGCCTTCACTGTCTCCATTCCACCCTATACCACCAAGTCTTGTCTGTTGCGATGCTATCAAAACTTTAGGCCAGTCTTGTATTTGTGCGTTGTTGGATGCTCCCCCTGTTTCTGGTGTTGATTATAACTTGGCCATGTCTCTGCCTCAGAAATGCGCTGCAAATTTCGAGCCATGTTTCTAG

Protein sequence

MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVCCDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPCF*
BLAST of Cucsa.050140 vs. TrEMBL
Match: A0A0A0K635_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428920 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.3e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1

Query: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60
           MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC
Sbjct: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60

Query: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPCF 105
           CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPCF
Sbjct: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPCF 104

BLAST of Cucsa.050140 vs. TrEMBL
Match: V4SWN4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033078mg PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.7e-28
Identity = 57/103 (55.34%), Postives = 77/103 (74.76%), Query Frame = 1

Query: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60
           MK +  K L  L+ +L +TSF+ Q  +  C+N+ I +LVQLIPCRP++SPF PIPPS  C
Sbjct: 1   MKLSGTKALPILLLVLVMTSFMEQGNSHPCANTFISTLVQLIPCRPAVSPFSPIPPSEAC 60

Query: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPC 104
           C+AIK LGQ C+C L++ PP++G+D N+A+ LP KC ANFEPC
Sbjct: 61  CNAIKALGQPCLCVLINGPPIAGIDRNVALQLPDKCIANFEPC 103

BLAST of Cucsa.050140 vs. TrEMBL
Match: A0A067H6Y1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039389mg PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.7e-28
Identity = 57/103 (55.34%), Postives = 77/103 (74.76%), Query Frame = 1

Query: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60
           MK +  K L  L+ +L +TSF+ Q  +  C+N+ I +LVQLIPCRP++SPF PIPPS  C
Sbjct: 1   MKLSGTKALPILLLVLVMTSFMEQGNSHPCANTFISTLVQLIPCRPAVSPFSPIPPSEAC 60

Query: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPC 104
           C+AIK LGQ C+C L++ PP++G+D N+A+ LP KC ANFEPC
Sbjct: 61  CNAIKALGQPCLCVLINGPPIAGIDRNVALQLPDKCIANFEPC 103

BLAST of Cucsa.050140 vs. TrEMBL
Match: V4VI71_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033078mg PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.7e-28
Identity = 57/103 (55.34%), Postives = 77/103 (74.76%), Query Frame = 1

Query: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60
           MK +  K L  L+ +L +TSF+ Q  +  C+N+ I +LVQLIPCRP++SPF PIPPS  C
Sbjct: 1   MKLSGTKALPILLLVLVMTSFMEQGNSHPCANTFISTLVQLIPCRPAVSPFSPIPPSEAC 60

Query: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPC 104
           C+AIK LGQ C+C L++ PP++G+D N+A+ LP KC ANFEPC
Sbjct: 61  CNAIKALGQPCLCVLINGPPIAGIDRNVALQLPDKCIANFEPC 103

BLAST of Cucsa.050140 vs. TrEMBL
Match: A0A067LFX8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16722 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.2e-26
Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 1

Query: 7   KPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVCCDAIKT 66
           K +  L+ ++ +T  +GQ +A  C ++   +LVQLIPCR +++PF PIPPS VCC+A+KT
Sbjct: 7   KTVPLLILVVVMTGLVGQGEAHACGSTFFSALVQLIPCRAAVAPFSPIPPSEVCCNALKT 66

Query: 67  LGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPC 104
           LGQ C+C L++ PP+SGVD N+A+ LP KC  NFEPC
Sbjct: 67  LGQPCLCVLVNGPPISGVDRNMALQLPDKCTTNFEPC 103

BLAST of Cucsa.050140 vs. TAIR10
Match: AT3G52130.1 (AT3G52130.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 9.9e-23
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1

Query: 30  CSNSLIYSLVQLIPCRPSLSPFHPIPPSLVCCDAIKTLGQSCICALLDAPPVSGVDYNLA 89
           CS +   +LVQLIPCR +++PF PIPP+ +CC A+ TLG+ C+C L + PP+SG+D ++A
Sbjct: 48  CSRTFFSALVQLIPCRAAVAPFSPIPPTEICCSAVVTLGRPCLCLLANGPPLSGIDRSMA 107

Query: 90  MSLPQKCAANFEPC 104
           + LPQ+C+ANF PC
Sbjct: 108 LQLPQRCSANFPPC 121

BLAST of Cucsa.050140 vs. TAIR10
Match: AT3G07450.1 (AT3G07450.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 4.9e-22
Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = 1

Query: 30  CSNSLIYSLVQLIPCRPSLSPFHPIPPSLVCCDAIKTLGQSCICALLDAPPVSGVDYNLA 89
           C  + + +L+QL+PCRPS++PF  +PP+ +CC AIKTLGQ C+C L   PP+ GVD  LA
Sbjct: 32  CGRTFLSALIQLVPCRPSVAPFSTLPPNGLCCAAIKTLGQPCLCVLAKGPPIVGVDRTLA 91

Query: 90  MSLPQKCAANFEPC 104
           + LP KC+ANF PC
Sbjct: 92  LHLPGKCSANFLPC 105

BLAST of Cucsa.050140 vs. TAIR10
Match: AT5G48490.1 (AT5G48490.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.4e-07
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1

Query: 40 QLIPCRPSLSPFHPIPPSLVCCDAIKTLGQSCICALLDAPPVS--GVDYNLAMSLPQKC 97
          +L  C P++S  +P  PSL+CC+A+K    +C+C   ++P +   GVD  LA SLP++C
Sbjct: 35 ELNECLPAVSKNNPTSPSLLCCNALKHADYTCLCGYKNSPWLGSFGVDPKLASSLPKEC 93

BLAST of Cucsa.050140 vs. NCBI nr
Match: gi|449436265|ref|XP_004135913.1| (PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1

Query: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60
           MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC
Sbjct: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60

Query: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPCF 105
           CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPCF
Sbjct: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPCF 104

BLAST of Cucsa.050140 vs. NCBI nr
Match: gi|659122667|ref|XP_008461263.1| (PREDICTED: protein LIM1-like [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 2.6e-49
Identity = 95/104 (91.35%), Postives = 101/104 (97.12%), Query Frame = 1

Query: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60
           MKQAIFKPLEFLVF+LAI SFLGQ KAKFCSNSLIYSLVQL+PCRPSLSPFHPIPPS +C
Sbjct: 1   MKQAIFKPLEFLVFILAIASFLGQGKAKFCSNSLIYSLVQLLPCRPSLSPFHPIPPSPLC 60

Query: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPCF 105
           C+AI+TLGQSCICALLDAPPVSGVDYNLAMSLPQKCA+NFEPCF
Sbjct: 61  CNAIETLGQSCICALLDAPPVSGVDYNLAMSLPQKCASNFEPCF 104

BLAST of Cucsa.050140 vs. NCBI nr
Match: gi|567893105|ref|XP_006439073.1| (hypothetical protein CICLE_v10033078mg [Citrus clementina])

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-27
Identity = 57/103 (55.34%), Postives = 77/103 (74.76%), Query Frame = 1

Query: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60
           MK +  K L  L+ +L +TSF+ Q  +  C+N+ I +LVQLIPCRP++SPF PIPPS  C
Sbjct: 1   MKLSGTKALPILLLVLVMTSFMEQGNSHPCANTFISTLVQLIPCRPAVSPFSPIPPSEAC 60

Query: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPC 104
           C+AIK LGQ C+C L++ PP++G+D N+A+ LP KC ANFEPC
Sbjct: 61  CNAIKALGQPCLCVLINGPPIAGIDRNVALQLPDKCIANFEPC 103

BLAST of Cucsa.050140 vs. NCBI nr
Match: gi|567893107|ref|XP_006439074.1| (hypothetical protein CICLE_v10033078mg [Citrus clementina])

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-27
Identity = 57/103 (55.34%), Postives = 77/103 (74.76%), Query Frame = 1

Query: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60
           MK +  K L  L+ +L +TSF+ Q  +  C+N+ I +LVQLIPCRP++SPF PIPPS  C
Sbjct: 1   MKLSGTKALPILLLVLVMTSFMEQGNSHPCANTFISTLVQLIPCRPAVSPFSPIPPSEAC 60

Query: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPC 104
           C+AIK LGQ C+C L++ PP++G+D N+A+ LP KC ANFEPC
Sbjct: 61  CNAIKALGQPCLCVLINGPPIAGIDRNVALQLPDKCIANFEPC 103

BLAST of Cucsa.050140 vs. NCBI nr
Match: gi|643737323|gb|KDP43435.1| (hypothetical protein JCGZ_16722 [Jatropha curcas])

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 1

Query: 7   KPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVCCDAIKT 66
           K +  L+ ++ +T  +GQ +A  C ++   +LVQLIPCR +++PF PIPPS VCC+A+KT
Sbjct: 7   KTVPLLILVVVMTGLVGQGEAHACGSTFFSALVQLIPCRAAVAPFSPIPPSEVCCNALKT 66

Query: 67  LGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPC 104
           LGQ C+C L++ PP+SGVD N+A+ LP KC  NFEPC
Sbjct: 67  LGQPCLCVLVNGPPISGVDRNMALQLPDKCTTNFEPC 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K635_CUCSA9.3e-54100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428920 PE=4 SV=1[more]
V4SWN4_9ROSI8.7e-2855.34Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033078mg PE=4 SV=1[more]
A0A067H6Y1_CITSI8.7e-2855.34Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039389mg PE=4 SV=1[more]
V4VI71_9ROSI8.7e-2855.34Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033078mg PE=4 SV=1[more]
A0A067LFX8_JATCU8.2e-2652.58Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16722 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G52130.19.9e-2354.05 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT3G07450.14.9e-2255.41 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT5G48490.13.4e-0740.68 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
Match NameE-valueIdentityDescription
gi|449436265|ref|XP_004135913.1|1.3e-53100.00PREDICTED: putative lipid-transfer protein DIR1 [Cucumis sativus][more]
gi|659122667|ref|XP_008461263.1|2.6e-4991.35PREDICTED: protein LIM1-like [Cucumis melo][more]
gi|567893105|ref|XP_006439073.1|1.3e-2755.34hypothetical protein CICLE_v10033078mg [Citrus clementina][more]
gi|567893107|ref|XP_006439074.1|1.3e-2755.34hypothetical protein CICLE_v10033078mg [Citrus clementina][more]
gi|643737323|gb|KDP43435.1|1.2e-2552.58hypothetical protein JCGZ_16722 [Jatropha curcas][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009627 systemic acquired resistance
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005504 fatty acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.050140.1Cucsa.050140.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 22..99
score: 2.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 37..103
score: 2.27
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 38..101
score: 8.
NoneNo IPR availablePANTHERPTHR33122FAMILY NOT NAMEDcoord: 1..103
score: 1.9
NoneNo IPR availablePANTHERPTHR33122:SF15B PROTEIN LIKE PROTEIN-RELATEDcoord: 1..103
score: 1.9

The following gene(s) are paralogous to this gene:

None