Cucsa.032000 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.032000
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Sarcoplasmic reticulum histidine-rich calcium-binding protein, putative
Location	scaffold00429 : 1270240 .. 1270530 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACAAGCAGTAGTTGAAGATCATCAAGTTGCTGAAACACAGCAAGAAACAGAGCGAGAAACAGGGGTGTGTACAAAGTATGAAGAAGCAGAGGCAGAAGCAGAAGCACCAGCAAGTGGTTCGGTGATTGAGATGGTGAAGAATTCAAAGGAGAAAGCTGGTGAAGAGTTTAGTCTTGAAAAGGATATTGATCATGTTGCTGATTTGTTCATCAGAAATTTTCATCAGCAGATGAGGATGCAGAAGCAGAATTCTCTTAACAGATCTCACCAAGAACTGCTTTTTCGTTGA

mRNA sequence

TTACAAGCAGTAGTTGAAGATCATCAAGTTGCTGAAACACAGCAAGAAACAGAGCGAGAAACAGGGGTGTGTACAAAGTATGAAGAAGCAGAGGCAGAAGCAGAAGCACCAGCAAGTGGTTCGGTGATTGAGATGGTGAAGAATTCAAAGGAGAAAGCTGGTGAAGAGTTTAGTCTTGAAAAGGATATTGATCATGTTGCTGATTTGTTCATCAGAAATTTTCATCAGCAGATGAGGATGCAGAAGCAGAATTCTCTTAACAGATCTCACCAAGAACTGCTTTTTCGTTGA

Coding sequence (CDS)

TTACAAGCAGTAGTTGAAGATCATCAAGTTGCTGAAACACAGCAAGAAACAGAGCGAGAAACAGGGGTGTGTACAAAGTATGAAGAAGCAGAGGCAGAAGCAGAAGCACCAGCAAGTGGTTCGGTGATTGAGATGGTGAAGAATTCAAAGGAGAAAGCTGGTGAAGAGTTTAGTCTTGAAAAGGATATTGATCATGTTGCTGATTTGTTCATCAGAAATTTTCATCAGCAGATGAGGATGCAGAAGCAGAATTCTCTTAACAGATCTCACCAAGAACTGCTTTTTCGTTGA

Protein sequence

LQAVVEDHQVAETQQETERETGVCTKYEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLEKDIDHVADLFIRNFHQQMRMQKQNSLNRSHQELLFR*

Homology

[Close]

BLAST of Cucsa.032000 vs. TrEMBL
Match: A0A0A0LCA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G252450 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 6.6e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1   LQAVVEDHQVAETQQETERETGVCTKYEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLE 60
           LQAVVEDHQVAETQQETERETGVCTKYEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLE
Sbjct: 66  LQAVVEDHQVAETQQETERETGVCTKYEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLE 125

Query: 61  KDIDHVADLFIRNFHQQMRMQKQNSLNRSHQELLFR 97
           KDIDHVADLFIRNFHQQMRMQKQNSLNRSHQELLFR
Sbjct: 126 KDIDHVADLFIRNFHQQMRMQKQNSLNRSHQELLFR 161

[Close]

BLAST of Cucsa.032000 vs. TrEMBL
Match: A0A067LBM0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26908 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 27  YEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLEKDIDHVADLFIRNFHQQMRMQKQNSL 86
           ++  + E E P  GSVI++VKNSK++AGEEFSLE +IDHVADLFI+ FH+QMRMQKQ S+
Sbjct: 141 FDSEDLEFEDPG-GSVIDIVKNSKQEAGEEFSLEDEIDHVADLFIKRFHRQMRMQKQLSV 200

Query: 87  NRSHQELLFR 97
            R HQE+L R
Sbjct: 201 KR-HQEMLER 208

[Close]

BLAST of Cucsa.032000 vs. TrEMBL
Match: A0A061EF31_THECC (Sarcoplasmic reticulum histidine-rich calcium-binding protein, putative OS=Theobroma cacao GN=TCM_017424 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-13
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 1


Query: 7   DHQVAETQQETERETGVCTK--YEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLEKDID 66
           +++  E  +E E +    T   ++  E E E P  GSVI++VKNSKE  GEEF LE +ID
Sbjct: 118 EYEEGEDDEEVEDKYPDLTHSLFDSEEMEFEDPG-GSVIDIVKNSKEDKGEEFKLEDEID 177

Query: 67  HVADLFIRNFHQQMRMQKQNSLNRSHQELLFR 97
            VADLFIR FH+Q+R+QKQ SL R HQE+L R
Sbjct: 178 RVADLFIRRFHRQIRLQKQLSLKR-HQEMLER 207

[Close]

BLAST of Cucsa.032000 vs. TrEMBL
Match: B9RGT7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1443920 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-12
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 1


Query: 27  YEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLEKDIDHVADLFIRNFHQQMRMQKQNSL 86
           ++  + + E P  GSVIE+VKNSK K GEEFSLE +IDHVADLFI+ FH+QMRMQKQ S+
Sbjct: 143 FDSEDLDFEDPG-GSVIELVKNSK-KEGEEFSLEDEIDHVADLFIKRFHRQMRMQKQLSI 202

Query: 87  NRSHQELLFR 97
            R +QE+L R
Sbjct: 203 KR-YQEMLER 209

[Close]

BLAST of Cucsa.032000 vs. TrEMBL
Match: A0A067ERV7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039527mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1


Query: 27  YEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLEKDIDHVADLFIRNFHQQMRMQKQNSL 86
           ++E E E E   +GS+I+MV+NSKE+ GE+FSLE++IDHVADLFI+ FH+QM +QK  S 
Sbjct: 133 FDEEEFEFEDEGNGSIIDMVRNSKEE-GEDFSLEEEIDHVADLFIKRFHRQMHLQKLASF 192

Query: 87  NRSHQELLFR 97
            R  QE+L R
Sbjct: 193 KR-FQEMLAR 200

[Close]

BLAST of Cucsa.032000 vs. TAIR10
Match: AT5G13880.1 (AT5G13880.1 unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 5.0e-13
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 1


Query: 5   VEDHQVAETQQETERETGVCTKYEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLEKDID 64
           V  H   +  +E + E G   KY +    +   A GSVIEMVK+SKE  GEEF LE +ID
Sbjct: 97  VSPHVQYQYTEEEDDEEGEEEKYPDLR-HSLFEAEGSVIEMVKHSKEDNGEEFRLEDEID 156

Query: 65  HVADLFIRNFHQQMRMQKQNSL 87
            VADLFI  FH+QM +QKQ SL
Sbjct: 157 KVADLFITRFHRQMWLQKQLSL 177

[Close]

BLAST of Cucsa.032000 vs. TAIR10
Match: AT5G47920.1 (AT5G47920.1 unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.5e-12
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 28  EEAEAEAEAPASGS-VIEMVKNSKEKAGEEFSLEKDIDHVADLFIRNFHQQMRMQKQNSL 87
           EE   + E    GS VI+MV+ SKE+ GE F LE +IDHVADLFI  FH+QM++QK  S 
Sbjct: 117 EEDFGDLEEEGQGSSVIDMVRTSKEEEGENFKLEDEIDHVADLFISRFHKQMKLQKLLSF 176

Query: 88  NRSHQELLFR 97
            R +QE+L R
Sbjct: 177 KR-YQEMLAR 185

[Close]

BLAST of Cucsa.032000 vs. NCBI nr
Match: gi|778680512|ref|XP_011651332.1| (PREDICTED: uncharacterized protein LOC105434868 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 9.4e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1   LQAVVEDHQVAETQQETERETGVCTKYEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLE 60
           LQAVVEDHQVAETQQETERETGVCTKYEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLE
Sbjct: 66  LQAVVEDHQVAETQQETERETGVCTKYEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLE 125

Query: 61  KDIDHVADLFIRNFHQQMRMQKQNSLNRSHQELLFR 97
           KDIDHVADLFIRNFHQQMRMQKQNSLNRSHQELLFR
Sbjct: 126 KDIDHVADLFIRNFHQQMRMQKQNSLNRSHQELLFR 161

[Close]

BLAST of Cucsa.032000 vs. NCBI nr
Match: gi|659098554|ref|XP_008450196.1| (PREDICTED: uncharacterized protein LOC103491856 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 1


Query: 1   LQAVVEDHQVAETQQETERETGVCTKYEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLE 60
           LQAVVEDHQVAET+Q    ETGV TKYEEAEAEAEA ASGSVIEMVKNSKEKAGEEFSLE
Sbjct: 66  LQAVVEDHQVAETEQ----ETGVFTKYEEAEAEAEAEASGSVIEMVKNSKEKAGEEFSLE 125

Query: 61  KDIDHVADLFIRNFHQQMRMQKQNSLNRSHQELLFR 97
           KDIDHVADLFIRNFH+QMRMQKQNSLNRSHQELLFR
Sbjct: 126 KDIDHVADLFIRNFHRQMRMQKQNSLNRSHQELLFR 157

[Close]

BLAST of Cucsa.032000 vs. NCBI nr
Match: gi|802564844|ref|XP_012067403.1| (PREDICTED: uncharacterized protein LOC105630244 [Jatropha curcas])

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-14
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 27  YEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLEKDIDHVADLFIRNFHQQMRMQKQNSL 86
           ++  + E E P  GSVI++VKNSK++AGEEFSLE +IDHVADLFI+ FH+QMRMQKQ S+
Sbjct: 141 FDSEDLEFEDPG-GSVIDIVKNSKQEAGEEFSLEDEIDHVADLFIKRFHRQMRMQKQLSV 200

Query: 87  NRSHQELLFR 97
            R HQE+L R
Sbjct: 201 KR-HQEMLER 208

[Close]

BLAST of Cucsa.032000 vs. NCBI nr
Match: gi|590648117|ref|XP_007032086.1| (Sarcoplasmic reticulum histidine-rich calcium-binding protein, putative [Theobroma cacao])

HSP 1 Score: 82.0 bits (201), Expect = 6.2e-13
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 1


Query: 7   DHQVAETQQETERETGVCTK--YEEAEAEAEAPASGSVIEMVKNSKEKAGEEFSLEKDID 66
           +++  E  +E E +    T   ++  E E E P  GSVI++VKNSKE  GEEF LE +ID
Sbjct: 118 EYEEGEDDEEVEDKYPDLTHSLFDSEEMEFEDPG-GSVIDIVKNSKEDKGEEFKLEDEID 177

Query: 67  HVADLFIRNFHQQMRMQKQNSLNRSHQELLFR 97
            VADLFIR FH+Q+R+QKQ SL R HQE+L R
Sbjct: 178 RVADLFIRRFHRQIRLQKQLSLKR-HQEMLER 207

[Close]

BLAST of Cucsa.032000 vs. NCBI nr
Match: gi|694406530|ref|XP_009378068.1| (PREDICTED: uncharacterized protein LOC103966610 [Pyrus x bretschneideri])

HSP 1 Score: 81.6 bits (200), Expect = 8.1e-13
Identity = 37/53 (69.81%), Postives = 48/53 (90.57%), Query Frame = 1


Query: 40  GSVIEMVKNSKEKAGEEFSLEKDIDHVADLFIRNFHQQMRMQKQNSLNRSHQE 93
           GSVI++VKNSK++AG+EFSLE++IDHVADLFIR FH+QMR+QKQ+S  R  Q+
Sbjct: 173 GSVIDIVKNSKQEAGQEFSLEEEIDHVADLFIRRFHRQMRIQKQHSFKRHQQQ 225

The following BLAST results are available for this feature:

BLAST of Cucsa.032000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCA7_CUCSA	6.6e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G252450 PE=4 SV=1	[more]
A0A067LBM0_JATCU	1.7e-14	64.29	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26908 PE=4 SV=1	[more]
A0A061EF31_THECC	4.3e-13	52.17	Sarcoplasmic reticulum histidine-rich calcium-binding protein, putative OS=Theob...	[more]
B9RGT7_RICCO	2.8e-12	62.86	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1443920 PE=4 SV=1	[more]
A0A067ERV7_CITSI	1.4e-11	57.14	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039527mg PE=4 SV=1	[more]

BLAST of Cucsa.032000 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13880.1	5.0e-13	51.22	unknown protein	[more]
AT5G47920.1	2.5e-12	54.29	unknown protein	[more]

BLAST of Cucsa.032000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680512\|ref\|XP_011651332.1\|	9.4e-46	100.00	PREDICTED: uncharacterized protein LOC105434868 [Cucumis sativus]	[more]
gi\|659098554\|ref\|XP_008450196.1\|	1.1e-38	91.67	PREDICTED: uncharacterized protein LOC103491856 [Cucumis melo]	[more]
gi\|802564844\|ref\|XP_012067403.1\|	2.5e-14	64.29	PREDICTED: uncharacterized protein LOC105630244 [Jatropha curcas]	[more]
gi\|590648117\|ref\|XP_007032086.1\|	6.2e-13	52.17	Sarcoplasmic reticulum histidine-rich calcium-binding protein, putative [Theobro...	[more]
gi\|694406530\|ref\|XP_009378068.1\|	8.1e-13	69.81	PREDICTED: uncharacterized protein LOC103966610 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.032000.1	Cucsa.032000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 61..92 score: 2.3
None	No IPR available	PANTHER	PTHR33450	FAMILY NOT NAMED	coord: 40..96 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.032000	Cla007153	Watermelon (97103) v1	cgywmB003
Cucsa.032000	Csa3G252450	Cucumber (Chinese Long) v2	cgycuB003
Cucsa.032000	MELO3C014757	Melon (DHL92) v3.5.1	cgymeB003
Cucsa.032000	ClCG05G012460	Watermelon (Charleston Gray)	cgywcgB004
Cucsa.032000	CSPI03G20030	Wild cucumber (PI 183967)	cgycpiB003
Cucsa.032000	CmaCh11G015650	Cucurbita maxima (Rimu)	cgycmaB0004
Cucsa.032000	CmoCh11G015560	Cucurbita moschata (Rifu)	cgycmoB0003
Cucsa.032000	Lsi05G004260	Bottle gourd (USVL1VR-Ls)	cgylsiB004
Cucsa.032000	Cp4.1LG04g06460	Cucurbita pepo (Zucchini)	cgycpeB0010
Cucsa.032000	MELO3C014757.2	Melon (DHL92) v3.6.1	cgymedB005
Cucsa.032000	CsaV3_3G020070	Cucumber (Chinese Long) v3	cgycucB006
Cucsa.032000	Cla97C05G094220	Watermelon (97103) v2	cgywmbB004
Cucsa.032000	Bhi01G001394	Wax gourd	cgywgoB004
Cucsa.032000	Carg25313	Silver-seed gourd	carcgyB0561

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.032000	Silver-seed gourd	carcgyB0552
Cucsa.032000	Cucurbita maxima (Rimu)	cgycmaB0005
Cucsa.032000	Cucurbita moschata (Rifu)	cgycmoB0004
Cucsa.032000	Cucurbita pepo (Zucchini)	cgycpeB0009