CmoCh11G015560 (gene) Cucurbita moschata (Rifu)

NameCmoCh11G015560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSarcoplasmic reticulum histidine-rich calcium-binding protein, putative
LocationCmo_Chr11 : 11207430 .. 11207954 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGGAATCATTGAGCAACATGGTGAAGCAAATGGCCTGTGGGTTAAGGGCCATGGTGAAAAGAAAAGCTCGAGCCCTCAAAGCTCGCCTCATTATCTACTCATTGCTAGCTCAATCCAACTTCCTCGTCTCCTCAATCCCTTTATCCACGGTCACCCATCAACAAAATCAGTGCCAAATTCAAGCCGCCGACCTCGAAAAAGCTCAAGAACATCAGGGAGTAGTCGAAGAAGAAACAGGGGCCGAAACAGGGGAAGAAACAGGGGCAGAAACAGGGGAAGAAACAGGGGCAGAAACAGGGGAGTGGGCGGAGCTGGAAACAGAGGCGGCTGTCGGAAGAACAAATGGGTGGTCGGTGATTGAGATGGTGAAGAATTCGAAGGAGGAGGCCGGCGAGGAGTTCAGTTTAGAGAAGGATATTGATGATGTGGCTGATTTGTTCATACGGAACTTCCATAGCCAGATGAGGATGCAGAAGCAGAACTCTCTTAATAGATATCACAAAATGCTTTCTTCTTAA

mRNA sequence

ATGAAGAAGGAATCATTGAGCAACATGGTGAAGCAAATGGCCTGTGGGTTAAGGGCCATGGTGAAAAGAAAAGCTCGAGCCCTCAAAGCTCGCCTCATTATCTACTCATTGCTAGCTCAATCCAACTTCCTCGTCTCCTCAATCCCTTTATCCACGGTCACCCATCAACAAAATCAGTGCCAAATTCAAGCCGCCGACCTCGAAAAAGCTCAAGAACATCAGGGAGTAGTCGAAGAAGAAACAGGGGCCGAAACAGGGGAAGAAACAGGGGCAGAAACAGGGGAAGAAACAGGGGCAGAAACAGGGGAGTGGGCGGAGCTGGAAACAGAGGCGGCTGTCGGAAGAACAAATGGGTGGTCGGTGATTGAGATGGTGAAGAATTCGAAGGAGGAGGCCGGCGAGGAGTTCAGTTTAGAGAAGGATATTGATGATGTGGCTGATTTGTTCATACGGAACTTCCATAGCCAGATGAGGATGCAGAAGCAGAACTCTCTTAATAGATATCACAAAATGCTTTCTTCTTAA

Coding sequence (CDS)

ATGAAGAAGGAATCATTGAGCAACATGGTGAAGCAAATGGCCTGTGGGTTAAGGGCCATGGTGAAAAGAAAAGCTCGAGCCCTCAAAGCTCGCCTCATTATCTACTCATTGCTAGCTCAATCCAACTTCCTCGTCTCCTCAATCCCTTTATCCACGGTCACCCATCAACAAAATCAGTGCCAAATTCAAGCCGCCGACCTCGAAAAAGCTCAAGAACATCAGGGAGTAGTCGAAGAAGAAACAGGGGCCGAAACAGGGGAAGAAACAGGGGCAGAAACAGGGGAAGAAACAGGGGCAGAAACAGGGGAGTGGGCGGAGCTGGAAACAGAGGCGGCTGTCGGAAGAACAAATGGGTGGTCGGTGATTGAGATGGTGAAGAATTCGAAGGAGGAGGCCGGCGAGGAGTTCAGTTTAGAGAAGGATATTGATGATGTGGCTGATTTGTTCATACGGAACTTCCATAGCCAGATGAGGATGCAGAAGCAGAACTCTCTTAATAGATATCACAAAATGCTTTCTTCTTAA
BLAST of CmoCh11G015560 vs. TrEMBL
Match: A0A0A0LCA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G252450 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.9e-37
Identity = 115/174 (66.09%), Postives = 125/174 (71.84%), Query Frame = 1

Query: 1   MKKESLSNMVKQMACGLRAMVKRKARALKARLIIYSLLAQSNFLVSS-IPLSTV-THQQN 60
           MK+ES+SNMVKQM   LR+MVKRKARALKARLIIYSLLAQSNF VSS IPL+T+ TH  N
Sbjct: 1   MKEESVSNMVKQMGNALRSMVKRKARALKARLIIYSLLAQSNFFVSSSIPLTTISTHHHN 60

Query: 61  QCQIQAADLEKAQEHQGVVEEETGAETGEETGAETGEETGAETGEWAELETEAAVGRTNG 120
           Q   Q          Q VVE+   AET +ET  ETG  T  E  E AE E  A+      
Sbjct: 61  QQHSQL---------QAVVEDHQVAETQQETERETGVCTKYEEAE-AEAEAPAS------ 120

Query: 121 WSVIEMVKNSKEEAGEEFSLEKDIDDVADLFIRNFHSQMRMQKQNSLNRYHKML 173
            SVIEMVKNSKE+AGEEFSLEKDID VADLFIRNFH QMRMQKQNSLNR H+ L
Sbjct: 121 GSVIEMVKNSKEKAGEEFSLEKDIDHVADLFIRNFHQQMRMQKQNSLNRSHQEL 158

BLAST of CmoCh11G015560 vs. TrEMBL
Match: A0A067LBM0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26908 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-11
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1

Query: 118 GWSVIEMVKNSKEEAGEEFSLEKDIDDVADLFIRNFHSQMRMQKQNSLNRYHKML 173
           G SVI++VKNSK+EAGEEFSLE +ID VADLFI+ FH QMRMQKQ S+ R+ +ML
Sbjct: 152 GGSVIDIVKNSKQEAGEEFSLEDEIDHVADLFIKRFHRQMRMQKQLSVKRHQEML 206

BLAST of CmoCh11G015560 vs. TrEMBL
Match: B9IA29_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s13610g PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-11
Identity = 72/192 (37.50%), Postives = 102/192 (53.12%), Query Frame = 1

Query: 8   NMVKQMACGLRAMVKRKARALKARLIIYSLLAQSNFLVSSI--PLSTVTHQQNQCQIQAA 67
           +++  MA      +K K  AL+ RLII+SLL     ++SSI   L ++  Q  + Q +A 
Sbjct: 14  SVLASMAKAKTLALKSKTNALRTRLIIFSLLGNKKIMMSSITEKLHSLMGQHEKDQEEAL 73

Query: 68  DLEKAQEHQGVVEEE-----------TGAETGEETGAETG---------EETGAETGEWA 127
           +LE   +++ +V              T  E  E   AE G         EE G    ++ 
Sbjct: 74  ELECLDQNKALVFHNHLDSMSPLLNPTDTELMENIVAEDGQDNIIGYVYEEAGDGEEKYP 133

Query: 128 EL-----ETEAAVGRTNGWSVIEMVKNSKEEAGEEFSLEKDIDDVADLFIRNFHSQMRMQ 173
           +L     ++E      +G SVI+MVKNSK+E GE FSLE +ID VADLFI+ FH QMR+Q
Sbjct: 134 DLTHSLFDSEGVEFEDSGVSVIDMVKNSKQE-GETFSLEDEIDQVADLFIKRFHHQMRLQ 193

BLAST of CmoCh11G015560 vs. TrEMBL
Match: A0A0D2RG29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157900 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10
Identity = 74/213 (34.74%), Postives = 102/213 (47.89%), Query Frame = 1

Query: 3   KESLSNMVKQMACGLRAM-------VKRKARALKARLIIYSLLAQSNFLVSSIP------ 62
           K   + ++KQ+  GL  M       +K K +A+K RL+I+SLL    FL+SS        
Sbjct: 2   KNKATGLLKQIIAGLTTMAKAKTMALKSKTKAIKTRLVIFSLLQNRKFLMSSFSEKLNAL 61

Query: 63  ---------------------LSTVTHQQNQCQIQAADLEKAQEHQGVVEEETGAETGEE 122
                                 + V +  N      +  E   + Q   EEE G   G+ 
Sbjct: 62  MGHNAKISKELEDDDCGDQQSQAIVLYNSNNAMWLPSTAETKYDDQEEEEEEYGDGDGDG 121

Query: 123 TGAETGEETGAETGE-WAEL------ETEAAVGRTNGWSVIEMVKNSKEEAGEEFSLEKD 175
            G   G+E  AE GE + +L        E  +G   G SVI++VKNSK + GEEF LE +
Sbjct: 122 DG--DGDEAEAEAGEKYPDLTHSLFESGEMELGDP-GSSVIDIVKNSKTDKGEEFRLEDE 181

BLAST of CmoCh11G015560 vs. TrEMBL
Match: A0A059BDZ9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01911 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 70/192 (36.46%), Postives = 95/192 (49.48%), Query Frame = 1

Query: 3   KESLSNMVKQMACGLRAMVK-------RKARALKARLIIYSLLAQSN-FLVSSIP----- 62
           K  +S M+KQM   L AM K       RK  AL+ RLII+SLL     F VS++      
Sbjct: 2   KNKVSTMLKQMLAALSAMAKSKSGALRRKTDALRTRLIIFSLLHHDKKFFVSTLSHKLQN 61

Query: 63  -LSTVTHQQNQCQIQAADLEKAQEHQG---VVEEETGAETGEE-----TGAETGEETGAE 122
            L    H + +   +A D + A E      +V   T      E     T  E  +    E
Sbjct: 62  LLLQHHHHEEKPHEEADDADLAAEQPSENDIVSYCTSEALVHEPMPVPTHCEPAKYEEEE 121

Query: 123 TGEWAELETEAAVGRTNGWSVIEMVKNSKEEAGEEFSLEKDIDDVADLFIRNFHSQMRMQ 173
            G+      + +   ++G SVIE+ K+SKE+ GEEF LE +ID VADLFI+ FH QM++Q
Sbjct: 122 DGDLTHTLFDDSDDSSSGGSVIELAKHSKEDRGEEFVLENEIDHVADLFIKRFHRQMKLQ 181

BLAST of CmoCh11G015560 vs. TAIR10
Match: AT5G13880.1 (AT5G13880.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-09
Identity = 65/178 (36.52%), Postives = 88/178 (49.44%), Query Frame = 1

Query: 1   MKKES-----LSNMVKQMACGLRAMVKRKARALKARLIIYSLLAQSNFLVSSIPLSTVTH 60
           MKK S     + NM+  +A      +KRK RA K RL+I+SLL   + +V S+     ++
Sbjct: 1   MKKASDFVKQIINMLTCLAKDKTKELKRKTRAFKTRLVIFSLLHNRHMVVGSLSHKLKSN 60

Query: 61  QQNQ-CQIQAADLEKAQEHQGVVEEETGAETGEETGAE-------TGEETGAETGEWAEL 120
           Q ++       D++   +   VV           T          T EE   E  E    
Sbjct: 61  QTSKKIDHDNKDVQDYHDKNMVVVYSQNVNAMSSTPVSPHVQYQYTEEEDDEEGEEEKYP 120

Query: 121 ETEAAVGRTNGWSVIEMVKNSKEEAGEEFSLEKDIDDVADLFIRNFHSQMRMQKQNSL 166
           +   ++    G SVIEMVK+SKE+ GEEF LE +ID VADLFI  FH QM +QKQ SL
Sbjct: 121 DLRHSLFEAEG-SVIEMVKHSKEDNGEEFRLEDEIDKVADLFITRFHRQMWLQKQLSL 177

BLAST of CmoCh11G015560 vs. TAIR10
Match: AT5G47920.1 (AT5G47920.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-08
Identity = 62/183 (33.88%), Postives = 83/183 (45.36%), Query Frame = 1

Query: 9   MVKQMACGLRAMVKRKARALKARLIIYSLLAQSNFLVSSIPLSTVTH-----QQNQCQIQ 68
           ++  MA      +K K  A K R+++ SL+        SI  + + H      Q+    Q
Sbjct: 14  LLSSMAKAKSIAIKNKTSAFKTRVLMLSLVKHKKLGFRSIS-NKIHHLLGHADQDDDNDQ 73

Query: 69  AADLEKA-------------QEHQGVVEEETGAETGEETGAETGEETGAETGEWAELETE 128
             D  KA              E   V EEE+            GEE      ++ +LE E
Sbjct: 74  DQDKNKAIVLYNSKASTMAHHEEYDVHEEESDKYPDLRHTLFEGEE------DFGDLEEE 133

Query: 129 AAVGRTNGWSVIEMVKNSKEEAGEEFSLEKDIDDVADLFIRNFHSQMRMQKQNSLNRYHK 174
                  G SVI+MV+ SKEE GE F LE +ID VADLFI  FH QM++QK  S  RY +
Sbjct: 134 G-----QGSSVIDMVRTSKEEEGENFKLEDEIDHVADLFISRFHKQMKLQKLLSFKRYQE 184

BLAST of CmoCh11G015560 vs. NCBI nr
Match: gi|778680512|ref|XP_011651332.1| (PREDICTED: uncharacterized protein LOC105434868 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 8.4e-37
Identity = 115/174 (66.09%), Postives = 125/174 (71.84%), Query Frame = 1

Query: 1   MKKESLSNMVKQMACGLRAMVKRKARALKARLIIYSLLAQSNFLVSS-IPLSTV-THQQN 60
           MK+ES+SNMVKQM   LR+MVKRKARALKARLIIYSLLAQSNF VSS IPL+T+ TH  N
Sbjct: 1   MKEESVSNMVKQMGNALRSMVKRKARALKARLIIYSLLAQSNFFVSSSIPLTTISTHHHN 60

Query: 61  QCQIQAADLEKAQEHQGVVEEETGAETGEETGAETGEETGAETGEWAELETEAAVGRTNG 120
           Q   Q          Q VVE+   AET +ET  ETG  T  E  E AE E  A+      
Sbjct: 61  QQHSQL---------QAVVEDHQVAETQQETERETGVCTKYEEAE-AEAEAPAS------ 120

Query: 121 WSVIEMVKNSKEEAGEEFSLEKDIDDVADLFIRNFHSQMRMQKQNSLNRYHKML 173
            SVIEMVKNSKE+AGEEFSLEKDID VADLFIRNFH QMRMQKQNSLNR H+ L
Sbjct: 121 GSVIEMVKNSKEKAGEEFSLEKDIDHVADLFIRNFHQQMRMQKQNSLNRSHQEL 158

BLAST of CmoCh11G015560 vs. NCBI nr
Match: gi|659098554|ref|XP_008450196.1| (PREDICTED: uncharacterized protein LOC103491856 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 1.6e-35
Identity = 111/174 (63.79%), Postives = 122/174 (70.11%), Query Frame = 1

Query: 1   MKKESLSNMVKQMACGLRAMVKRKARALKARLIIYSLLAQSNFLVSS-IPLSTV-THQQN 60
           MKKES+SNMVKQM   L ++VKRKARALKARLI+YSLLAQSNF VSS IPL+T+ TH  N
Sbjct: 1   MKKESVSNMVKQMGNALTSLVKRKARALKARLIVYSLLAQSNFFVSSSIPLTTISTHHHN 60

Query: 61  QCQIQAADLEKAQEHQGVVEEETGAETGEETGAETGEETGAETGEWAELETEAAVGRTNG 120
           Q   Q          Q VVE+   AET +ETG  T  E        AE E EA+      
Sbjct: 61  QQHSQL---------QAVVEDHQVAETEQETGVFTKYEEAE-----AEAEAEAS------ 120

Query: 121 WSVIEMVKNSKEEAGEEFSLEKDIDDVADLFIRNFHSQMRMQKQNSLNRYHKML 173
            SVIEMVKNSKE+AGEEFSLEKDID VADLFIRNFH QMRMQKQNSLNR H+ L
Sbjct: 121 GSVIEMVKNSKEKAGEEFSLEKDIDHVADLFIRNFHRQMRMQKQNSLNRSHQEL 154

BLAST of CmoCh11G015560 vs. NCBI nr
Match: gi|743870868|ref|XP_011033698.1| (PREDICTED: uncharacterized protein LOC105132099 [Populus euphratica])

HSP 1 Score: 77.0 bits (188), Expect = 3.6e-11
Identity = 75/205 (36.59%), Postives = 110/205 (53.66%), Query Frame = 1

Query: 1   MKKES------LSNMVKQMACGLRAMVKRKARALKARLIIYSLLAQSNFLVSSI--PLST 60
           MKK+S      + +++  MA      +K K  AL+ RLII+SLL     ++SSI   L +
Sbjct: 1   MKKKSGGFLKRIMSVLASMAKAKTLALKSKTNALRTRLIIFSLLGNKKIMMSSITEKLHS 60

Query: 61  VTHQQNQCQIQAADLEKAQEHQGVVEE-------------------ETGAETGEETGAET 120
           +  Q ++ Q +A +LE   +++ +V                     E  AE G++     
Sbjct: 61  LMGQHDKDQEEALELECLDQNKALVFHNDFNSMSPLLINPTHTELMENVAEDGQDNIVGH 120

Query: 121 G-EETGAETGEWAEL-----ETEAAVGRTNGWSVIEMVKNSKEEAGEEFSLEKDIDDVAD 173
           G EE G +  ++ +L     +TE      +G SVI+MVKNSK+E GE FSLE +ID VAD
Sbjct: 121 GYEEAGGDEEKYPDLTHSLFDTEGVEFEDSGVSVIDMVKNSKQE-GESFSLEDEIDHVAD 180

BLAST of CmoCh11G015560 vs. NCBI nr
Match: gi|802564844|ref|XP_012067403.1| (PREDICTED: uncharacterized protein LOC105630244 [Jatropha curcas])

HSP 1 Score: 76.3 bits (186), Expect = 6.1e-11
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1

Query: 118 GWSVIEMVKNSKEEAGEEFSLEKDIDDVADLFIRNFHSQMRMQKQNSLNRYHKML 173
           G SVI++VKNSK+EAGEEFSLE +ID VADLFI+ FH QMRMQKQ S+ R+ +ML
Sbjct: 152 GGSVIDIVKNSKQEAGEEFSLEDEIDHVADLFIKRFHRQMRMQKQLSVKRHQEML 206

BLAST of CmoCh11G015560 vs. NCBI nr
Match: gi|224128702|ref|XP_002320398.1| (hypothetical protein POPTR_0014s13610g [Populus trichocarpa])

HSP 1 Score: 76.3 bits (186), Expect = 6.1e-11
Identity = 72/192 (37.50%), Postives = 102/192 (53.12%), Query Frame = 1

Query: 8   NMVKQMACGLRAMVKRKARALKARLIIYSLLAQSNFLVSSI--PLSTVTHQQNQCQIQAA 67
           +++  MA      +K K  AL+ RLII+SLL     ++SSI   L ++  Q  + Q +A 
Sbjct: 14  SVLASMAKAKTLALKSKTNALRTRLIIFSLLGNKKIMMSSITEKLHSLMGQHEKDQEEAL 73

Query: 68  DLEKAQEHQGVVEEE-----------TGAETGEETGAETG---------EETGAETGEWA 127
           +LE   +++ +V              T  E  E   AE G         EE G    ++ 
Sbjct: 74  ELECLDQNKALVFHNHLDSMSPLLNPTDTELMENIVAEDGQDNIIGYVYEEAGDGEEKYP 133

Query: 128 EL-----ETEAAVGRTNGWSVIEMVKNSKEEAGEEFSLEKDIDDVADLFIRNFHSQMRMQ 173
           +L     ++E      +G SVI+MVKNSK+E GE FSLE +ID VADLFI+ FH QMR+Q
Sbjct: 134 DLTHSLFDSEGVEFEDSGVSVIDMVKNSKQE-GETFSLEDEIDQVADLFIKRFHHQMRLQ 193

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LCA7_CUCSA5.9e-3766.09Uncharacterized protein OS=Cucumis sativus GN=Csa_3G252450 PE=4 SV=1[more]
A0A067LBM0_JATCU4.2e-1170.91Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26908 PE=4 SV=1[more]
B9IA29_POPTR4.2e-1137.50Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s13610g PE=4 SV=1[more]
A0A0D2RG29_GOSRA2.7e-1034.74Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157900 PE=4 SV=1[more]
A0A059BDZ9_EUCGR1.4e-0936.46Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01911 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G13880.11.6e-0936.52 unknown protein[more]
AT5G47920.12.3e-0833.88 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778680512|ref|XP_011651332.1|8.4e-3766.09PREDICTED: uncharacterized protein LOC105434868 [Cucumis sativus][more]
gi|659098554|ref|XP_008450196.1|1.6e-3563.79PREDICTED: uncharacterized protein LOC103491856 [Cucumis melo][more]
gi|743870868|ref|XP_011033698.1|3.6e-1136.59PREDICTED: uncharacterized protein LOC105132099 [Populus euphratica][more]
gi|802564844|ref|XP_012067403.1|6.1e-1170.91PREDICTED: uncharacterized protein LOC105630244 [Jatropha curcas][more]
gi|224128702|ref|XP_002320398.1|6.1e-1137.50hypothetical protein POPTR_0014s13610g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008480DUF761_pln
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G015560.1CmoCh11G015560.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 140..172
score: 1.4
NoneNo IPR availablePANTHERPTHR33450FAMILY NOT NAMEDcoord: 3..174
score: 2.7