Cucsa.031520 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.031520
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTitin
Locationscaffold00429 : 564146 .. 564361 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTGAGGGTAGTAGTGAACTTGAAAGCAAAAATAATGAAGTCATTGAAGATGAAGATGAAGATGAAAGCAACAAATTACGATGCAGATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAAGCCCAGAAGCTCATCCAACAGTCCTTGAAATTTGCTGACTCTCCCTCTTCTAAAACTTATGCCTTTTGA

mRNA sequence

ATGATGTTGAGGGTAGTAGTGAACTTGAAAGCAAAAATAATGAAGTCATTGAAGATGAAGATGAAGATGAAAGCAACAAATTACGATGCAGATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAAGCCCAGAAGCTCATCCAACAGTCCTTGAAATTTGCTGACTCTCCCTCTTCTAAAACTTATGCCTTTTGA

Coding sequence (CDS)

ATGATGTTGAGGGTAGTAGTGAACTTGAAAGCAAAAATAATGAAGTCATTGAAGATGAAGATGAAGATGAAAGCAACAAATTACGATGCAGATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAAGCCCAGAAGCTCATCCAACAGTCCTTGAAATTTGCTGACTCTCCCTCTTCTAAAACTTATGCCTTTTGA

Protein sequence

MMLRVVVNLKAKIMKSLKMKMKMKATNYDADYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYAF*
Homology
[Close]
BLAST of Cucsa.031520 vs. TrEMBL
Match: K4BCB7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-11
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1 

Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYDADYDKMEKSESMRVEIRSRKAQKLIQQSLKFADS 63
          R++VNLK K+ +S KMK           YDK+EKSESMRVEIRS+KA+KLI+Q+LK ADS
Sbjct: 6  RLMVNLKTKLRRSFKMK---------ESYDKIEKSESMRVEIRSKKARKLIEQTLKIADS 64

Query: 64 PSSKTYAF 72
          P S++Y F
Sbjct: 66 PKSRSYPF 64

[Close]
BLAST of Cucsa.031520 vs. TrEMBL
Match: M1AMJ5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010048 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-11
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1 

Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYDADYDKMEKSESMRVEIRSRKAQKLIQQSLKFADS 63
          R++VNLK K+ +S KMK           YDK+EKSESMRVEIRS+KA+KLI+Q+LK ADS
Sbjct: 5  RLMVNLKTKLRRSFKMK---------ESYDKIEKSESMRVEIRSKKARKLIEQTLKIADS 63

Query: 64 PSSKTYAF 72
          P S++Y F
Sbjct: 65 PKSRSYPF 63

[Close]
BLAST of Cucsa.031520 vs. TrEMBL
Match: A0A0L9VN52_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g222900 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-11
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 12 KIMKSLKMKMKMKATNYDADYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYAF 71
          ++M SLK KM+       ++YDK+EKSESMR+EIRSRKA+KLI+Q+LK ADSP SKT+AF
Sbjct: 28 RLMVSLKSKMRCLKIVKKSEYDKVEKSESMRMEIRSRKARKLIEQTLKVADSPKSKTFAF 87

[Close]
BLAST of Cucsa.031520 vs. TrEMBL
Match: A0A0S3T890_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.11G070600 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-11
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 12 KIMKSLKMKMKMKATNYDADYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYAF 71
          ++M SLK KM+       ++YDK+EKSESMR+EIRSRKA+KLI+Q+LK ADSP SKT+AF
Sbjct: 36 RLMVSLKSKMRCLKIVKKSEYDKVEKSESMRMEIRSRKARKLIEQTLKVADSPKSKTFAF 95

[Close]
BLAST of Cucsa.031520 vs. TrEMBL
Match: A0A0B0NSM2_GOSAR (Titin OS=Gossypium arboreum GN=F383_02728 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-11
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1 

Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYD--ADYDKMEKSESMRVEIRSRKAQKLIQQSLKFA 63
          R+VVNLK+K+ +SLKM  K   T  +    YDKMEK+ESMR+EIRSRKA+KLIQ +LK A
Sbjct: 5  RMVVNLKSKL-RSLKMTKKKPTTTGEHYCYYDKMEKTESMRIEIRSRKARKLIQDTLKIA 64

Query: 64 DSPSSKTYAF 72
          DSP ++T+ F
Sbjct: 65 DSPHTRTFHF 73

[Close]
BLAST of Cucsa.031520 vs. NCBI nr
Match: gi|1012262170|ref|XP_015946389.1| (PREDICTED: uncharacterized protein LOC107471443 [Arachis duranensis])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 1 

Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYDADYDKMEKSESMRVEIRSRKAQKLIQQSLKFADS 63
          R+V+ LK+KI++ LK     K   +   YDK+EKSESMR+EIRSRKA+KLI+++LK ADS
Sbjct: 6  RLVLTLKSKIIRCLKNNNNNKNNKHSYYYDKVEKSESMRMEIRSRKARKLIEETLKIADS 65

Query: 64 PSSKTYAF 72
          P+SKT+AF
Sbjct: 66 PTSKTFAF 73

[Close]
BLAST of Cucsa.031520 vs. NCBI nr
Match: gi|965616316|dbj|BAU01466.1| (hypothetical protein VIGAN_11070600, partial [Vigna angularis var. angularis])

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-11
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 12 KIMKSLKMKMKMKATNYDADYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYAF 71
          ++M SLK KM+       ++YDK+EKSESMR+EIRSRKA+KLI+Q+LK ADSP SKT+AF
Sbjct: 36 RLMVSLKSKMRCLKIVKKSEYDKVEKSESMRMEIRSRKARKLIEQTLKVADSPKSKTFAF 95

[Close]
BLAST of Cucsa.031520 vs. NCBI nr
Match: gi|920716249|gb|KOM56337.1| (hypothetical protein LR48_Vigan10g222900 [Vigna angularis])

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-11
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 12 KIMKSLKMKMKMKATNYDADYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYAF 71
          ++M SLK KM+       ++YDK+EKSESMR+EIRSRKA+KLI+Q+LK ADSP SKT+AF
Sbjct: 28 RLMVSLKSKMRCLKIVKKSEYDKVEKSESMRMEIRSRKARKLIEQTLKVADSPKSKTFAF 87

[Close]
BLAST of Cucsa.031520 vs. NCBI nr
Match: gi|728838105|gb|KHG17548.1| (Titin [Gossypium arboreum])

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-11
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1 

Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYD--ADYDKMEKSESMRVEIRSRKAQKLIQQSLKFA 63
          R+VVNLK+K+ +SLKM  K   T  +    YDKMEK+ESMR+EIRSRKA+KLIQ +LK A
Sbjct: 5  RMVVNLKSKL-RSLKMTKKKPTTTGEHYCYYDKMEKTESMRIEIRSRKARKLIQDTLKIA 64

Query: 64 DSPSSKTYAF 72
          DSP ++T+ F
Sbjct: 65 DSPHTRTFHF 73

[Close]
BLAST of Cucsa.031520 vs. NCBI nr
Match: gi|643710030|gb|KDP24356.1| (hypothetical protein JCGZ_25652 [Jatropha curcas])

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-11
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 1 

Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYDADYDKMEKSESMRVEIRSRKAQKLIQQSLKFADS 63
          R++ NLK+KI +SLKMK           YDK+EKSESMRVEIRSRKA+KLI+++LK ADS
Sbjct: 8  RLMGNLKSKI-RSLKMKKP---------YDKIEKSESMRVEIRSRKAKKLIEETLKIADS 65

Query: 64 PSSKTYAF 72
          P S+TYAF
Sbjct: 68 PKSRTYAF 65

The following BLAST results are available for this feature:
BLAST of Cucsa.031520 vs. TrEMBL
Match NameE-valueIdentityDescription
K4BCB7_SOLLC1.0e-1158.82Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
M1AMJ5_SOLTU1.0e-1158.82Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010048 PE=4 SV=1[more]
A0A0L9VN52_PHAAN1.8e-1163.33Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g222900 PE=4 SV=1[more]
A0A0S3T890_PHAAN1.8e-1163.33Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.11... [more]
A0A0B0NSM2_GOSAR1.8e-1160.00Titin OS=Gossypium arboreum GN=F383_02728 PE=4 SV=1[more]
BLAST of Cucsa.031520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012262170|ref|XP_015946389.1|1.3e-1258.82PREDICTED: uncharacterized protein LOC107471443 [Arachis duranensis][more]
gi|965616316|dbj|BAU01466.1|2.5e-1163.33hypothetical protein VIGAN_11070600, partial [Vigna angularis var. angularis][more]
gi|920716249|gb|KOM56337.1|2.5e-1163.33hypothetical protein LR48_Vigan10g222900 [Vigna angularis][more]
gi|728838105|gb|KHG17548.1|2.5e-1160.00Titin [Gossypium arboreum][more]
gi|643710030|gb|KDP24356.1|3.3e-1163.24hypothetical protein JCGZ_25652 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.031520.1Cucsa.031520.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34563FAMILY NOT NAMEDcoord: 4..71
score: 2.9
NoneNo IPR availablePANTHERPTHR34563:SF1SUBFAMILY NOT NAMEDcoord: 4..71
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.031520MELO3C023781Melon (DHL92) v3.5.1cgymeB003
Cucsa.031520MELO3C023781.2Melon (DHL92) v3.6.1cgymedB004
Cucsa.031520Bhi01G001452Wax gourdcgywgoB005
Cucsa.031520Carg07480Silver-seed gourdcarcgyB0854
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.031520Cucurbita maxima (Rimu)cgycmaB0005
Cucsa.031520Cucurbita maxima (Rimu)cgycmaB0011
Cucsa.031520Cucurbita moschata (Rifu)cgycmoB0004
Cucsa.031520Cucurbita moschata (Rifu)cgycmoB0010
Cucsa.031520Wild cucumber (PI 183967)cgycpiB003
Cucsa.031520Cucumber (Chinese Long) v2cgycuB003
Cucsa.031520Watermelon (Charleston Gray)cgywcgB004
Cucsa.031520Watermelon (97103) v1cgywmB003
Cucsa.031520Cucurbita pepo (Zucchini)cgycpeB0008
Cucsa.031520Cucurbita pepo (Zucchini)cgycpeB0009
Cucsa.031520Bottle gourd (USVL1VR-Ls)cgylsiB004
Cucsa.031520Silver-seed gourdcarcgyB0552
Cucsa.031520Cucumber (Chinese Long) v3cgycucB006
Cucsa.031520Watermelon (97103) v2cgywmbB004