Carg07480 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07480
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glucose-repressible alcohol dehydrogenase transcriptional effector like
Location	Cucurbita_argyrosperma_scaffold_019 : 1052734 .. 1052928 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGTTAGTGGTGAATTTGAAGGCAAAAATCATGAAGTCGTTGAAGATGAAGAAGGCCACAGATAGTTACGATAAGATGGAGAAAAGTGAAAGCATGCGAGTTGAAATCAGAAGCAGAAAGGCCCAAAAGCTCATCCAACAGACCATGAAAATCGCTGACTCTCCCTCTTCAAAAACTTACGCTCTCTGA

mRNA sequence

ATGAAGAGGTTAGTGGTGAATTTGAAGGCAAAAATCATGAAGTCGTTGAAGATGAAGAAGGCCACAGATAGTTACGATAAGATGGAGAAAAGTGAAAGCATGCGAGTTGAAATCAGAAGCAGAAAGGCCCAAAAGCTCATCCAACAGACCATGAAAATCGCTGACTCTCCCTCTTCAAAAACTTACGCTCTCTGA

Coding sequence (CDS)

ATGAAGAGGTTAGTGGTGAATTTGAAGGCAAAAATCATGAAGTCGTTGAAGATGAAGAAGGCCACAGATAGTTACGATAAGATGGAGAAAAGTGAAAGCATGCGAGTTGAAATCAGAAGCAGAAAGGCCCAAAAGCTCATCCAACAGACCATGAAAATCGCTGACTCTCCCTCTTCAAAAACTTACGCTCTCTGA

Protein sequence

MKRLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSKTYAL

Homology

[Close]

BLAST of Carg07480 vs. NCBI nr
Match: OAY60374.1 (hypothetical protein MANES_01G107200 [Manihot esculenta])

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MKRLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSK 60
          ++RLVV+LK+KI +SLKMKK    YDK+EKSESMRVEIRSRKA+KLI++TMKIADSP SK
Sbjct: 5  LERLVVSLKSKI-RSLKMKKL---YDKIEKSESMRVEIRSRKARKLIEETMKIADSPKSK 63

Query: 61 TYA 64
          TYA
Sbjct: 65 TYA 63

[Close]

BLAST of Carg07480 vs. NCBI nr
Match: PHT91693.1 (hypothetical protein T459_06806 [Capsicum annuum])

HSP 1 Score: 75.5 bits (184), Expect = 7.4e-11
Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 2  KRLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSKT 61
          +RL+VNLK K+ +S KMK   +SYDK+EKSESMRVEIRS+KA+KLI+QT+KIADSP S++
Sbjct: 5  ERLMVNLKTKLRRSFKMK---ESYDKIEKSESMRVEIRSKKARKLIEQTLKIADSPKSRS 62

Query: 62 Y 63
          Y
Sbjct: 65 Y 62

[Close]

BLAST of Carg07480 vs. NCBI nr
Match: PIA39540.1 (hypothetical protein AQUCO_02600176v1 [Aquilegia coerulea])

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 42/63 (66.67%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MKRLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSK 60
          ++RLV+NLK K++K+LK KK    YDK+EKSESMRVEIRS+KA+KLI++T+KIADSP +K
Sbjct: 4  LERLVLNLKTKVLKALKPKKL---YDKVEKSESMRVEIRSKKARKLIEETLKIADSPKNK 63

Query: 61 TYA 64
          +YA
Sbjct: 64 SYA 63

[Close]

BLAST of Carg07480 vs. NCBI nr
Match: CDP02385.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 42/63 (66.67%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MKRLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSK 60
          +++LV NLK+K++KSL+M+KA   YDK+EKSESMRVEIRSRKA+KLI +T++IADSP ++
Sbjct: 10 LEKLVGNLKSKLLKSLRMRKA---YDKIEKSESMRVEIRSRKARKLIARTLRIADSPHTR 69

Query: 61 TYA 64
          TYA
Sbjct: 70 TYA 69

[Close]

BLAST of Carg07480 vs. NCBI nr
Match: OIT20748.1 (hypothetical protein A4A49_57847 [Nicotiana attenuata])

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 41/61 (67.21%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2  KRLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSKT 61
          +RL+VNLK K+ +SLKMK   +SYDK+EKSESMRVEIRS+KA+KLI+QT++IADSP +++
Sbjct: 5  ERLMVNLKTKLRRSLKMK---ESYDKIEKSESMRVEIRSKKARKLIEQTLQIADSPKTRS 62

Query: 62 Y 63
          Y
Sbjct: 65 Y 62

[Close]

BLAST of Carg07480 vs. TrEMBL
Match: tr|A0A2C9WL25|A0A2C9WL25_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G107200 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.9e-12
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MKRLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSK 60
          ++RLVV+LK+KI +SLKMKK    YDK+EKSESMRVEIRSRKA+KLI++TMKIADSP SK
Sbjct: 5  LERLVVSLKSKI-RSLKMKKL---YDKIEKSESMRVEIRSRKARKLIEETMKIADSPKSK 63

Query: 61 TYA 64
          TYA
Sbjct: 65 TYA 63

[Close]

BLAST of Carg07480 vs. TrEMBL
Match: tr|M1AMJ5|M1AMJ5_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.9e-11
Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 2  KRLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSKT 61
          +RL+VNLK K+ +S KMK   +SYDK+EKSESMRVEIRS+KA+KLI+QT+KIADSP S++
Sbjct: 4  ERLMVNLKTKLRRSFKMK---ESYDKIEKSESMRVEIRSKKARKLIEQTLKIADSPKSRS 61

Query: 62 Y 63
          Y
Sbjct: 64 Y 61

[Close]

BLAST of Carg07480 vs. TrEMBL
Match: tr|A0A2G3ABZ3|A0A2G3ABZ3_CAPAN (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_06806 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.9e-11
Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 2  KRLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSKT 61
          +RL+VNLK K+ +S KMK   +SYDK+EKSESMRVEIRS+KA+KLI+QT+KIADSP S++
Sbjct: 5  ERLMVNLKTKLRRSFKMK---ESYDKIEKSESMRVEIRSKKARKLIEQTLKIADSPKSRS 62

Query: 62 Y 63
          Y
Sbjct: 65 Y 62

[Close]

BLAST of Carg07480 vs. TrEMBL
Match: tr|K4BCB7|K4BCB7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.9e-11
Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 2  KRLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSKT 61
          +RL+VNLK K+ +S KMK   +SYDK+EKSESMRVEIRS+KA+KLI+QT+KIADSP S++
Sbjct: 5  ERLMVNLKTKLRRSFKMK---ESYDKIEKSESMRVEIRSKKARKLIEQTLKIADSPKSRS 62

Query: 62 Y 63
          Y
Sbjct: 65 Y 62

[Close]

BLAST of Carg07480 vs. TrEMBL
Match: tr|A0A2G5D7Q5|A0A2G5D7Q5_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02600176v1 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.4e-11
Identity = 42/63 (66.67%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MKRLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSK 60
          ++RLV+NLK K++K+LK KK    YDK+EKSESMRVEIRS+KA+KLI++T+KIADSP +K
Sbjct: 4  LERLVLNLKTKVLKALKPKKL---YDKVEKSESMRVEIRSKKARKLIEETLKIADSPKNK 63

Query: 61 TYA 64
          +YA
Sbjct: 64 SYA 63

The following BLAST results are available for this feature:

BLAST of Carg07480 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY60374.1	1.5e-11	76.19	hypothetical protein MANES_01G107200 [Manihot esculenta]	[more]
PHT91693.1	7.4e-11	68.85	hypothetical protein T459_06806 [Capsicum annuum]	[more]
PIA39540.1	9.7e-11	66.67	hypothetical protein AQUCO_02600176v1 [Aquilegia coerulea]	[more]
CDP02385.1	1.7e-10	66.67	unnamed protein product [Coffea canephora]	[more]
OIT20748.1	1.7e-10	67.21	hypothetical protein A4A49_57847 [Nicotiana attenuata]	[more]

BLAST of Carg07480 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg07480 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07480 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2C9WL25\|A0A2C9WL25_MANES	9.9e-12	76.19	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G107200 PE=4 SV=...	[more]
tr\|M1AMJ5\|M1AMJ5_SOLTU	4.9e-11	68.85	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]
tr\|A0A2G3ABZ3\|A0A2G3ABZ3_CAPAN	4.9e-11	68.85	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_06806 PE=4 SV=1	[more]
tr\|K4BCB7\|K4BCB7_SOLLC	4.9e-11	68.85	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
tr\|A0A2G5D7Q5\|A0A2G5D7Q5_AQUCA	6.4e-11	66.67	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02600176v1 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07480-RA	Carg07480-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563:SF1	SUBFAMILY NOT NAMED	coord: 2..64
None	No IPR available	PANTHER	PTHR34563	FAMILY NOT NAMED	coord: 2..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07480	MELO3C023781	Melon (DHL92) v3.5.1	carmeB0757
Carg07480	Cucsa.031520	Cucumber (Gy14) v1	carcgyB0854
Carg07480	MELO3C023781.2	Melon (DHL92) v3.6.1	carmedB0772
Carg07480	Bhi01G001452	Wax gourd	carwgoB0896

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07480	Silver-seed gourd	carcarB471
Carg07480	Cucumber (Gy14) v2	carcgybB0757
Carg07480	Cucurbita maxima (Rimu)	carcmaB1057
Carg07480	Cucurbita maxima (Rimu)	carcmaB1059
Carg07480	Cucurbita moschata (Rifu)	carcmoB1031
Carg07480	Cucurbita moschata (Rifu)	carcmoB1033
Carg07480	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07480	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07480	Wild cucumber (PI 183967)	carcpiB0798
Carg07480	Cucumber (Chinese Long) v2	carcuB0780
Carg07480	Cucumber (Chinese Long) v3	carcucB0801
Carg07480	Bottle gourd (USVL1VR-Ls)	carlsiB700
Carg07480	Watermelon (Charleston Gray)	carwcgB0739
Carg07480	Watermelon (97103) v1	carwmB0761
Carg07480	Watermelon (97103) v2	carwmbB0795