Cucsa.031460 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.031460
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00429 : 497178 .. 502531 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTAGAAGATTGAATTTGGTTTTGATGATTGCTCCTTCATATTGTTAACATCTGAATCTTTTAGAACAGAGGATGTGCTTTCTTTGGCAGGTTCTTTTGGTAACTCTTCTTGATTGGTTTCTTCCATGTCAGCATCTTCATATTGAGAACTGCAACTTTCAAGTTCAACAGGACAAATCTTTTCAAAACTAAACCTGTCGTCTGAATAGTCAATCTTACAGGAAGATATGCTTTCTTCTTTTGTATTAAGCTTAGGTTCATAAGAACTATTCAGATCTGAGCCTTTTCCATTCTTTTGTAGATGAGAGCCATCTTCATGATCTGAATCAATATCCTGTGATTCGGACTTTGAAAGGTTGATTGCAGCTTTAGCTGCTAATGCTGCATAAGCTGCCGATTGGAAGGGTTCTTCAGTGGCACTAGCTACATCTTTAAACTTCTTTGATTTCACTAATTCCGATGCCATCTTTTCACTTGTAATAACTTCATGTAGATCATCTGTGGTGTTTGTGACTTCAGGATTATACAAATCTGCTTCTTTCTTGATTTCCAACTTTTGGTTTTGCTTTGCCTGCAGTTAACAGATGAATTTTTTACTAAAAAGTTAACTTAGGAAGTAGAAGCACTCATTTTCTATCAAGGTGAGGAACATACGGCTCTTTGGTGACACTTTTTCCTCTTCTAATCGCTTTTTCTTAGTTTAAAATAAAGCACCTTTCCATTCAAGCTTATATTTTTTAGTTAGCAATTGGCGCTCCCTTATGTAATCACCTTTTTTTGATGTTTGGGGCTCTTCACTATCATATGAATGAAATGTTTCTTTTCACTATATTAAAAAAAAAAAAGATATTTCCTCACCTTGATGATTATTGGTGATTCTTCCTCTAAATGGAGAGGAATGCCATTTTCTGAAGCAATTTCCTTTAGCACTTTCAGTTTAGTTTCGGCACTGGGCTGTTTTGTTGAAAACTTTTGAATCATCTGTAATATGGAAACTGTGGTTATTAAGTGGAGATTATATATTCGAACAACTAATTCGTTTCTTGCAGTTGGTAAGTATCAAACTCACCTTGGTACTAACACCACAGTTGTTGCGTAAATCAATGGCACTGCTTGCAAACTCCGCACCAAACTTCAACTCGAAAATCCGACGAATCTCTTGAAGTTCTGGAAACTCTCCGCACCTTGAAGCTGCAAATATCAGACTCGATATCGCCTCCTTAACTTCGCCAGGGCATTCCCTGCATTTAAGCCGAAAGAGAATCAGAAAAGGTTTCAAATCTTTTAAAAGGCCTGCATCCAAAGTTGACAAAAATGACATAGTGAAATTCTAGGAAAGAAAGGTGACCTACTTGTTCATCTGAAGAAGAGCCACCTTTTCTACGAGAAGGCAGCAGTAATCCTCTATCATTCCAAGAGCATCCAACATGTTATTCTCCTTGATCACAATCTCAACCTGTTCATTAACGTTCACATCCAAGCTCAGCGGTTGGAAAAAAAGAAAAAAATGAGAAGGGGCTGAACTATAGAGTTCTGAAAGAGAGAGAAAAAATTTACTCTAAGCTGAGCACGATGTTGGTAACTAAGATTCAACAGTTGAAGAACATCGGCACGAGCTAGGGAGCAACGGGCGCGGTGGTGGTTTTTTAGGATGGAAGTCCTAGAAATGGCCATATTAGCAAGGGTCTTAAACTTGGAAGCCTTCAAATATCTGTTCCTTCCCAGTAAAGCATCCAGTTTCCTTCCCATGATGGAAAAACCTTAAATTCTGTTTGCTGCTTGTTTGCCTGTGAAAAGCTCTTGAATGAACTACTTTTTGGTTGTTGGTTGCGGACATTGCCTGTGTTTTATAGGGAAGATGCATGATTAACTATTTTACCAACATTCACATGCATAATTTATTTATTTTTTCCTTAAAGCAGGTCAGAGAATTGGCTCCCATTATTGACTTTGAAATAGGCGTTGATTAGTGAAATTTCCAGGCTTTGAATGGTTCAAACAGAATTGACTATGGAGGTATTAGCAGGCGGCTTTGGTCTGGAAAATGACATTACTTGGAAATGGGAAGCTTCTGAGGTATTATGTCCACTTCTAGTCATTATGAATTACTTCTCCTTTAATCAACTCATTTAATTGGTGAAAGGTGCTTTCTTTTTTCAAATACTTTTTGTTCTGCAAAAACGTTCAAATAGAATTATTCAGTTTTCTGTTATATTTTGTTGTTATGTGCGTTGAATGGGTTTTAAAAGAAATATTTAATTAGTTGAGTTTGGGAGTGATTTCAGTATAAAATCATTTTTGTCATGTCTTTCTCTAAAATTGTGATCTTTGATTATCATGAAAAAGTGATTTCGGATCAATCACTCTAAAGGTGGTTTTTGTTATGGGAATGTCACTTGTGAGTGATTTCTTTTTTTTACAAAGACTATTATTTTATATTGAAAAAATATTCTCCTATTTCACTTTATTTTGTACTAAAAATTTTAGAATATATAATAGATCTATTTTGTTAAAATTTCTATTATCCTACTAACACTCTTAAACATTGCTTTCTATTGATCGTCAACAAAAGTTTTACTTAAAGTGACATTTATTTGTACCTCAGTTTAATGACTTTGATTAGGGGATTTAATTGCAACCATGTCTATTACACTATTTGAGGGCTCATCCTATTAAATAAAACCAAGGCTGATCCATATATATCTCTAGCCACCTTTTTCTTCTCTTCTTTTAACCATGCCAAAGTTGAAAAACTCTCTTTCCTAGAAAATACTTTTGAAAAAGGTTTAGTAGTTCACGTCGTCGTTAATTGAAAAAATTAATTGTTAACTAATAACTGAAGGTAAGCTAATTTATGTTTGAAAAGAAAAGTTGGAGTTGGTGTGGATTTGGCTTAAGATAGTATGAGATTTGGTTGATAATGGTAATGTCAAAAGTAGGATGAATCTATGTAACAAATATAGTTATTATAGTTATTAGATGGTAGGGAAGGGAAGGGAATAAATGGGGCGAAGAGGTGTGGGGAGAAAGGAGAAGGTTGAGAAATGGGCCCAATTCGGGTATCCCACACGGAAACATTCTGTCTTTTATTGTCAGGGGTTGTTCCTATACAACAAATAAAAAGAAAAAGGCAGGCAAATTTCCCTATTCACAAATCCATTGAAAAAAAATAAAGGTGAGATGATATTGACTGGCTTGTAATATGATAAGATTCAATGGGTTTAAAAATTGAAGTTTTCTTGCAAAAGAAATGTTCATTTGAGAGAAAATTGTTCATGATTTTGTCGAAGTCTACGTCTTTGATTTTGTAAAACCCATTTTCGTACTAGATGTAGTAGAAAGATTTGTCCACTTTGCAAATCTCCACTTCCACTTTCTGTTTGAGTGTGACTGTAGAACTTGTTGGAAATTGGCTGAAGAAGATTCTTAAAAGAATAGTGGAAGGACGGAGCGAGAAGAGAGAGAAGGGAGATACAACAAACCTCCTTTCTGGGTGTGTAAATTCTCAACCAAATCTGTTTAATTCAAAGAACCATGTTTCATACCCAAATTACAATGAGTTTTAATCCTATTTTAAGCTACAAAACTTACCTTAGCCACTCGCGACCTGGTGAGATGACTGTCACACCCTTCAAATTCACCTACTTAAATTGAGATGAGATGCAACTAGCAAGAGAAGTGTCAACAAGGTGACACTCCACACCAAGAACGCAACTTGAATGATTCAAGGCATAATTTTCCTACTCCCTGCTTAGCTTATCACTTAGATGCTTTTAGCACATTTGAAAATTTAAGTTGAACGCTAAAAATGCTCAATGTGATGGATAACAATGAATGCACAAAAACTTCTCATTTTATTTACTCAAACACCCGTTTCAACTTTACAACTTGACACTAAATTTTAACTTATTACCATACGGTTGCTTCTTGTCATTCGTCAGCTTACCTCTACCCTACAAGTTATGCTAGGTGTTTGTTAACTTTCTATTAGAGTTCGGCAAGAAAGTACCGCATAACTATAATACTCCCGAACACACGTTATTAAGTGATCACGTAGAAACACATTTGGGCTCTTGGTGAACACGAAGGAAACATCCTAAGAGAGTCGGGCTGACTCTGTCGAATCACTCATAAAATCTAGCTACACATGCATAAGTAGGTGGTGATTTCGAGGGACACCCATATGATACGACTTTAACCGACAAAGTTAATAGAACAACATAGCCTATACATGTAGCATATCATAAATATCATATCTCAACCATAACCTCAATCATTGGAGATCTCAATCATAACATATCTTATTCATAAGATATCATGGTCGTCACATATCTCACTCATGTGTATCTCAGTGTCTATGTAGTCATCAATCAGTTATCCCTAATAGTCACATCATGCATTATAATTACGATAATGCATAATAAGGTAAAACATACATGCACGACCTTTATTCTAATGTTGGGTCCCCAAAATAATCGTGCAATCAAAACAGGTCTTAAGTAGTAAAGGAAAAAACTAAAATTAATAAAATTATCGGTTGATTATTGAACCCAAAATCAACTCAATTCAACTTACCCAAAGTTGAGGTTGAATTCCAGTTCAACCTTGGTTAAGAGAAAATTCCTCGAAGTTAATTCTTTTAATTTAGCCTATTACCCTTCAAGCAAAAAAAATCCAAATTAACTTAATTAAGGTCCAAAAATATAACAATTGACGTGTATATCTGACACCATCAAAACTCATCCCAAATGGCTCAATATAGGTGAAGAGAGGGCAAAATGGTGCAAAGTAGCTCGACTTGTTCGGATGGCTCAACCTGGATGGAAGGATGGCTCAGACGTGAGAAGATCGACTCGAGTGAAGAAAGAATGGAGACTCTTCGGCTTCACGATGACGGAGAGTCGCGGCGAAGATCCACACGTTGGATCGAAGGAAACTTGGCTGGAGGCTTCGCTGGGTGGAATGCGACGGCGGAACAAAGATGGAGCTTAGCGGCGACAAAGTGGCGCACAACGGCTCGCGAGCCAAAGATGAACGCGCGAAGACTAGCTTCGTTTGTGCTTGGACGGTGGTGAACATAGTCTGTGGTGGTGCGACCTTTAATGGAGATCGGTGAACGGAGAAGAAAAGGGCGACAACTAGGTTTTCAAGAGGAGGAAGATCATATAGTTTCCTTCTTTTCCGTGCACGTGGTAGGGGTGAAATCTGTTGGGTTGATAGACATTCTCAACTCAACCCATATTTTCGAGTTATTTTGGTTGGCAACAATTTGAATAATCTGAATTTAGTTTCCAATCCAACCGGTTGTTATCGGGTTGTATTTGTTTTTTTTTTTTCTCTCGTTTCTAGTTAC

mRNA sequence

TTGTAGAAGATTGAATTTGGTTTTGATGATTGCTCCTTCATATTGTTAACATCTGAATCTTTTAGAACAGAGGATGTGCTTTCTTTGGCAGGTTCTTTTGGTAACTCTTCTTGATTGGTTTCTTCCATGTCAGCATCTTCATATTGAGAACTGCAACTTTCAAGTTCAACAGGACAAATCTTTTCAAAACTAAACCTGTCGTCTGAATAGTCAATCTTACAGGAAGATATGCTTTCTTCTTTTGTATTAAGCTTAGGTTCATAAGAACTATTCAGATCTGAGCCTTTTCCATTCTTTTGTAGATGAGAGCCATCTTCATGATCTGAATCAATATCCTGTGATTCGGACTTTGAAAGGTTGATTGCAGCTTTAGCTGCTAATGCTGCATAAGCTGCCGATTGGAAGGGTTCTTCAGTGGCACTAGCTACATCTTTAAACTTCTTTGATTTCACTAATTCCGATGCCATCTTTTCACTTGTAATAACTTCATGTAGATCATCTGTGGTGTTTGTGACTTCAGGATTATACAAATCTGCTTCTTTCTTGATTTCCAACTTTTGGTTTTGCTTTGCCTGCAGTTAACAGATGAATTTTTTACTAAAAAGTTAACTTAGGAAGTAGAAGCACTCATTTTCTATCAAGGCTTTGAATGGTTCAAACAGAATTGACTATGGAGGTATTAGCAGGCGGCTTTGGTCTGGAAAATGACATTACTTGGAAATGGGAAGCTTCTGAGgtgaagagagggcaaaatggtgcaaagtagctcgacttgttcggatggctcaacctggatggaaggatggctcagacgtgagaagATCGACTCGAGTGAAGAAAGAATGGAGACTCTTCGGCTTCACGATGACGGAGAGTCGCGGCGAAGATCCACACGTTGGATCGAAGGAAACTTGGCTGGAGGCTTCGCTGGGTGGAATGCGACGGCGGAACAAAGATGGAGCTTAGCGGCGACAAAGTGGCGCACAACGGCTCGCGAGCCAAAGATGAACGCGCGAAGACTAGCTTCGTTTGTGCTTGGACGGTGGTGAACATAGTCTGTGGTGGTGCGACCTTTAATGGAGATCGGTGAACGGAGAAGAAAAGGGCGACAACTAGGTTTTCAAGAGGAGGAAGATCATATAGTTTCCTTCTTTTCCGTGCACGTGGTAGgggtgaaatctgttgggttgatagacattctcaactcaacccatattttcgagttattttggttggcaacaatttgaataatctgaatttagtttccaatccaaccggttgttatcgggttgtatttgttttttttttttctctcgtttctagttac

Coding sequence (CDS)

ATGGTGCAAAGTAGCTCGACTTGTTCGGATGGCTCAACCTGGATGGAAGGATGGCTCAGACGTGAGAAGATCGACTCGAGTGAAGAAAGAATGGAGACTCTTCGGCTTCACGATGACGGAGAGTCGCGGCGAAGATCCACACGTTGGATCGAAGGAAACTTGGCTGGAGGCTTCGCTGGGTGGAATGCGACGGCGGAACAAAGATGGAGCTTAGCGGCGACAAAGTGGCGCACAACGGCTCGCGAGCCAAAGATGAACGCGCGAAGACTAGCTTCGTTTGTGCTTGGACGGTGGTGA

Protein sequence

MVQSSSTCSDGSTWMEGWLRREKIDSSEERMETLRLHDDGESRRRSTRWIEGNLAGGFAGWNATAEQRWSLAATKWRTTAREPKMNARRLASFVLGRW*
Homology
[Close]
BLAST of Cucsa.031460 vs. TrEMBL
Match: A0A0A0LCG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271390 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-33
Identity = 77/98 (78.57%), Postives = 80/98 (81.63%), Query Frame = 1 

Query: 1  MVQSSSTCSDGSTWMEG----WLRREKIDSSEERMETLRLHDDGESRRRSTRWIEGNLAG 60
          MVQSSSTCSDGSTWMEG    WLRREKIDSSEERMETLRLHD GESRRRSTRWIEGNLAG
Sbjct: 1  MVQSSSTCSDGSTWMEGWLRWWLRREKIDSSEERMETLRLHDGGESRRRSTRWIEGNLAG 60

Query: 61 GFAGWNATAEQRWSLAATKWRTTAREPKMNARRLASFV 95
          GFAGWNATAE+RWSLAAT     +R     A+   SFV
Sbjct: 61 GFAGWNATAEERWSLAATVAHNGSRAKDERAK--TSFV 96

[Close]
BLAST of Cucsa.031460 vs. NCBI nr
Match: gi|700202613|gb|KGN57746.1| (hypothetical protein Csa_3G271390 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 7.2e-33
Identity = 77/98 (78.57%), Postives = 80/98 (81.63%), Query Frame = 1 

Query: 1  MVQSSSTCSDGSTWMEG----WLRREKIDSSEERMETLRLHDDGESRRRSTRWIEGNLAG 60
          MVQSSSTCSDGSTWMEG    WLRREKIDSSEERMETLRLHD GESRRRSTRWIEGNLAG
Sbjct: 1  MVQSSSTCSDGSTWMEGWLRWWLRREKIDSSEERMETLRLHDGGESRRRSTRWIEGNLAG 60

Query: 61 GFAGWNATAEQRWSLAATKWRTTAREPKMNARRLASFV 95
          GFAGWNATAE+RWSLAAT     +R     A+   SFV
Sbjct: 61 GFAGWNATAEERWSLAATVAHNGSRAKDERAK--TSFV 96

The following BLAST results are available for this feature:
BLAST of Cucsa.031460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCG0_CUCSA5.0e-3378.57Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271390 PE=4 SV=1[more]
BLAST of Cucsa.031460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202613|gb|KGN57746.1|7.2e-3378.57hypothetical protein Csa_3G271390 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.031460.2Cucsa.031460.2mRNA
Cucsa.031460.1Cucsa.031460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.031460Csa3G271390Cucumber (Chinese Long) v2cgycuB003
Cucsa.031460CSPI03G20610Wild cucumber (PI 183967)cgycpiB003
Cucsa.031460CsaV3_3G020590Cucumber (Chinese Long) v3cgycucB006
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.031460Silver-seed gourdcarcgyB0552
Cucsa.031460Silver-seed gourdcarcgyB0854
Cucsa.031460Watermelon (97103) v2cgywmbB004
Cucsa.031460Wax gourdcgywgoB005
Cucsa.031460Cucurbita maxima (Rimu)cgycmaB0005
Cucsa.031460Cucurbita maxima (Rimu)cgycmaB0011
Cucsa.031460Cucurbita moschata (Rifu)cgycmoB0004
Cucsa.031460Cucurbita moschata (Rifu)cgycmoB0010
Cucsa.031460Melon (DHL92) v3.5.1cgymeB003
Cucsa.031460Watermelon (Charleston Gray)cgywcgB004
Cucsa.031460Watermelon (97103) v1cgywmB003
Cucsa.031460Cucurbita pepo (Zucchini)cgycpeB0008
Cucsa.031460Cucurbita pepo (Zucchini)cgycpeB0009
Cucsa.031460Bottle gourd (USVL1VR-Ls)cgylsiB004
Cucsa.031460Melon (DHL92) v3.6.1cgymedB004