Cucsa.022190 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.022190
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	F-box protein SKIP24
Location	scaffold00313 : 89590 .. 93966 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGATAGTTATAGTATTGTGTTGGATGATGTTTGGAATTGGATTCTAATGCGTAGGGCTCTTTCACATTCTTCATTTCCAACTTTGCAAATCCCAAAATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCTCATCTTCTCTTCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTACAAGAAAGGATTCATGAACCTGAACCATATCTCTTAATTTCTCTCTTCCAATCTCTCTCAATTCATTATTCTTTTCTTTTGTTCATCTTCTGTTTCGGTTAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGTCCTTCACTGAATTCTCTAATCTACGCACAGTCAGGTAGGGTTCGGCAATTGATTCAAAATCCTTCAGTAATATTTTCTGTTTCTTTTCTCGCTTGGTGTTTTAGTGATATGTCATGTGTGCTTGTGCAACTTGGTTGCTTGCAATCTGTAAAGTTTTTTTATTGGAATTGTGTTTTCGTTGAGTTTTTAAAAGGGGGAGACTACAATAGCTGATTATTGTCATTGTATGTAAATTCAATAGAATCCTCTTACTTAAATCTTGAGTTCAACAACATCTGGGGTCGAGGCGCATGAATCTCTAACCTTTTGGATCGAGGGATATGCCTAAGCCAGTTTGAACTATGCTTAGGTTGGCAAGATCATTTTACTAGGTCGAGTGGTATTCAGTTATTTGTTGATAACAAAGCCCAATGGATTCATTTGGAACCTTTCTACCTCTTCACGTGAATGCTAATATGTTGATTTCGGTTTGAAGTCAGAATTTTTAGATATGATAATTGTGTTTTATCGTTTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCAAAAAGCACTTGTAAGTTTTGAATGTGGAAACATTATTTTTCTATCTGTTAAGAACTATAATTTTAATTTCTTATACTGCTTGCCACAGAAAGATGAAAAAAAGAGATTGGAATTAGCCAAAGAAGAGTTAACTTCATTGAAGTATCACCCTCTTAAGGATCATAAATCTATGAATAGCAGTAATAATGACACTCACATCAAGAGGAGGTCCAAGGATGCAATAAATGTAAGGTTCTTGCTTGTTGATTATGCTTCAATTTTTTTTTTATTGTGAATTTTGATAATTTCTTCGTGTTGCTGATGGTTTGGTTGCTATGAAATCTAACTTTCCCGTGAATTAATGAATTCTAATGTGTGCATGTGCACTGTGCTCTATTAGCATTTTTCTTCTTCAAACCATCATTATTGTTTTCTCATGATGTTACCGCTTCTCCCAGTTTTACTAAATAAACTCATTAGGATACTACATATTTCTTATGAAGGTATTTTCCTAGTCTGGCCATGGATTGATGCTCGCGTTCGTTGGTAGATTATCTGATGTCTTGAACTTAATGTCTTTTTTTAACTTTGACCTCCATAAATAACATTCACATAGAGGGTGGGGGTGGGTTGAAGGGAGGGGAGGTTTTCTTATTGTGAATGATTTGTAATTAGGTTGGAATCTTGGATTGATCTATATTTTATATTATATACTTGATTGATTAAGTTGTAGACACATATATACTTTACCTTTTTTTCCCACAAATAAATTGGAAGAGAAAATTAGCTTACTTTTTTATTACTTCACTGTGGAAATTGTGGCTTACCTCTTTTTTCATTAGATACATAATAATAACCAAATGTTGGCACATCAACTGGCTTGTTTTCCTGTGGTTATTTTATTTTCTGGTTAAAATTTCTTCAACCTTCATGACCACAGTATTGTTTATTCCTCAACTTTCACCAGCCCTACTTAGATAATATATTCTCCTTTCTTGCCTATATTGGTACAAATGGTACCCACCCCTTATATGTACTGAATATGTTGCATGTTTGCTTAAAATCCAAGTGAGAACTCAAACTGATATGATAAATATACTTGATTACCAAATTTTCTAGAGCAAGGTAAAACAGCTACGCAGTACATGATTGGGGGAGCATTGCCTGTTGAAGAATGAGCCTGTCCTCAACATATAGGCAGTGGAACTAATAAAAACAGTTATGAATTCCGGTTGAGATGAACGTAACCACCAAAGTGTTCTGCACTAGGTGCAAAGTAATGATAAGATCGAACTGTTATATCAAACATCATATGGAGTTTTACATTTTATTCAAATGGGGAATTTTATAAATCAGTTGGAAGATCATCAATAAGCGCTTCTTTGACCCAAGAAAATATATGTCAACTCCCAATTTGGCCTACAGATAAAGAAACTCATGGCAAATTAAATCCAAGTCAGGACAACAACACTAATTAACTGTTGCAGTTCCCACGTTCATCCAGGTACTCCCCTTCACTCTTCATTTCTCTCCTTTCCCTCTCTTTGGCAGATTATCTCGTCTATTGTGTTCAAATTGGTCATTTTCTCTTCACCATTGCAAGTTTTTTCCTTCCAGATCTGTTTGTATGTGTGTGTGTTTTCCAGATTCATAGCTCTAAATGCTCTACACTTTTTAGATCCGAGACCCTAACCTCCTCAGCTGCCTCAAGGAAAACTAAAAAAAAATCACTCTTCTCGCAAGAAAGAGCTTAGTTATGTCTAATGATCAAATGATCAAGAGGTTCGTGGTTCATATCTCCCACCCACACTTGTACTCAAATCAGCCTCTTGGTGCTATCTTTCTTATTCCCTCATCTACTGTAGCTTCCTTGCCGTTGGTTCTTGTGTTTTTTGTATTTGAGTTAAAATAACAAAGGAATAGCTTGGTAGGGGACAGCTAGTGCTTGAATCTTGGTGGGCGGGAGGCAACTGCTTAAGCTTTGTTCTATCCTTTCAATATTAGTCGATGATAGGACATACATGTTCAATCTGTATTTTTGCTGCATGAATTTCTTCATTCCTTCCTTGAGAAAATTTTCTCTGATATGTTTCTGTCTTTGTTTTCACTCCTTTTTTATTCTATTTTTGTCTTCGTTTGTTTGATTGGATCTGTTTTTTTCCCGATTTAGTTTCATAAGTTTCATTTGTATGAAAGAAAATCAGTTATGGGTTGCATGAATGTTTCATGTTGGAATATCATTATGAACTGAGGATGTATTTGGTGCATGTGCGAGAGTAGGCCAAGATTACAAATTCATATAAAATTATATTAAACTATAATTGATACTAGTATATCTGTTTGAACATGTGTGATCGCAAATAGACTAGGAAAGAATTCCTTCCTTCATTAGGATGAGTTGTCATTCGTGTTTGGAAAGAGGATTGGTCTAGAGACTCCACGGGATATGGCATCGAATGACAATGAGCACTTGGGGCAGATGCGCATGTGGAAGGATCTCAAGAACATTATATTTCAGTTCCCTCTGATGTTTGGCGCAACAGCCACTGTATACAAAGACTGTTGTAGGTCTGACTCCAATAGGGACTAAAATTGGTGAGGTAGTAAGAAGAAATGAACAACATATCACTCAAGATATGTTAAACGTGGTATGGATGATTACAATAAACATGCAAACAAGGCAACAGCTTGAGAGGATTGCATCTTGGTTTAAATCAAAGCATGCTATGGTGGAGTCCAGACAACGAAAGGAAGTGGTGGAGAGAGATTCCCTCAATTGTTAGAGTTGTTCCAACGGGTTAAGGTCAAACTAATGGATATCATATTCACGAATGTAGATGGAGCAAAAAAATTCCTTGCCTATTCCAATCAAGCTGAAAAGTACTTGTTGAATGCACTCTTGGGTAAAGGTGAATAAATAGCCTGTCTTGCAACAAAATCAATTTGCTTGGTTTGGAAAAGAACAAATTTTTTAAATCAACTCAATTTGATCCTTTTTTTTTTCATATTAAAACTGTGTTTACTTGTTTTTTTTCTTTTAAGTTTGAACCACAGACTTGTTGATTCTTAGCGTACACTAGTGTCAGTATTATTATTGCACGTTCTTTTATCTATATTTTCTTACCGATTAACATAGATGTGAAGTTATTGTGTTGTGTA

mRNA sequence

GAGGATAGTTATAGTATTGTGTTGGATGATGTTTGGAATTGGATTCTAATGCGTAGGGCTCTTTCACATTCTTCATTTCCAACTTTGCAAATCCCAAAATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCtcatcttctcttctccgattacccttcatcctcttcttcttttccatcttccgcttcctcctcAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGTCCTTCACTGAATTCTCTAATCTACGCACAGTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTAAAGATGAAAAAAAGAGATTGGAATTAGCCAAAGAAGAGTTAACTTCATTGAAGTATCACCCTCTTAAGGATCATAAATCTATGAATAGCAGTAATAATGACACTCACATCAAGAGGAGGTCCAAGGATGCAATAAATAGCAAGGTAAAACAGCTACGCAGTACATGATTGGGGGAGCATTGCCTGTTGAAGAATGAGCCTGTCCTCAACATATAGGCAGTGGAACTAATAAAAACAGTTATGAATTCCGGTTGAGATGAACGTAACCACCAAAGTGTTCTGCACTAGGTGCAAAGTAATGATAAGATCGAACTGTTATATCAAACATCATATGGAGTTTTACATTTTATTCAAATGGGGAATTTTATAAATCAGTTGGAAGATCATCAATAAGCGCTTCTTTGACCCAAGAAAATATATGTCAACTCCCAATTTGGCCTACAGATAAAGAAACTCATGGCAAATTAAATCCAAGTCAGGACAACAACACTAATTAACTGTTGCAGTTCCCACGTTCATCCAGACTAGGAAAGAATTCCTTCCTTCATTAGGATGAGTTGTCATTCGTGTTTGGAAAGAGGATTGGTCTAGAGACTCCACGGGATATGGCATCGAATGACAATGAGCACTTGGGGCAGATGCGCATGTGGAAGGATCTCAAGAACATTATATTTCAGTTCCCTCTGATGTTTGGCGCAACAGCCACTGTATACAAAGACTGTTGTAGGTCTGACTCCAATAGGGACTAAAATTGGTGAGGTAGTAAGAAGAAATGAACAACATATCACTCAAGATATGTTAAACGTGGTATGGATGATTACAATAAACATGCAAACAAGGCAACAGCTTGAGAGGATTGCATCTTGGTTTAAATCAAAGCATGCTATGGTGGAGTCCAGACAACGAAAGGAAGTGGTGGAGAGAGATTCCCTCAATTGTTAGAGTTGTTCCAACGGGTTAAGGTCAAACTAATGGATATCATATTCACGAATGTAGATGGAGCAAAAAAATTCCTTGCCTATTCCAATCAAGCTGAAAAGTACTTGTTGAATGCACTCTTGGGTAAAGGTGAATAAATAGCCTGTCTTGCAACAAAATCAATTTGCTTGGTTTGGAAAAGAACAAATTTTTTAAATCAACTCAATTTGATCCTTTTTTTTTTCATATTAAAACTGTGTTTACTTGTTTTTTTTCTTTTAAGtttgaaccacagacttgttgattcttagcgtacactagtgtcagtATTATTATTGCACGTTCTTTTATCTATATTTTCTTACCGATTAACATAGATGTGAAGTTATTGTGTTGTGTA

Coding sequence (CDS)

ATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCTCATCTTCTCTTCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGTCCTTCACTGAATTCTCTAATCTACGCACAGTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTAA

Protein sequence

MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL*

Homology

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BLAST of Cucsa.022190 vs. Swiss-Prot
Match: SKI24_ARATH (F-box protein SKIP24 OS=Arabidopsis thaliana GN=SKIP24 PE=1 SV=2)

HSP 1 Score: 239.2 bits (609), Expect = 4.8e-62
Identity = 125/235 (53.19%), Postives = 174/235 (74.04%), Query Frame = 1


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  FPSSASS-SKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 121
             SS+ S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 181
            +S  +FS+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KLCKQQ
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQ 183

Query: 182 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIK-RRSKDAIN 235
           I    +AL++ K R ++A +EL S+KYHPL+D+KS+ + +  ++ K ++ K +IN
Sbjct: 184 IMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

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BLAST of Cucsa.022190 vs. TrEMBL
Match: A0A0A0L0S2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G416990 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 2.6e-131
Identity = 242/243 (99.59%), Postives = 242/243 (99.59%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINSKVKQL 240
           IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHK MNSSNNDTHIKRRSKDAINSKVKQL
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKYMNSSNNDTHIKRRSKDAINSKVKQL 240

Query: 241 RST 244
           RST
Sbjct: 241 RST 243

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BLAST of Cucsa.022190 vs. TrEMBL
Match: A0A067KTZ6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02647 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.6e-70
Identity = 138/234 (58.97%), Postives = 176/234 (75.21%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSS-- 60
           MS LPDELW QIL+IG++    +YKDLCCVSI+  RL RLS  DSLWSHLL SD+P    
Sbjct: 1   MSSLPDELWRQILEIGIQNEKFSYKDLCCVSITCRRLHRLSSEDSLWSHLLSSDFPQPQN 60

Query: 61  --SSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEE 120
             S++   S+  +KS+Y+IR ER++ RK AAH RAVLRKES+I E  R++  +E RL EE
Sbjct: 61  PRSNNHSPSSRWAKSIYEIRFEREKERKVAAHRRAVLRKESEIMERERKMKGIETRLCEE 120

Query: 121 TGKWTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 180
           T K   + +E SNL  VR+A+VALNVWQPE +R RQKQIVEQC+VSV+ R ++L+MELKL
Sbjct: 121 TEKMRATASELSNLHKVRQASVALNVWQPETVRGRQKQIVEQCAVSVEYRFQSLEMELKL 180

Query: 181 CKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSK 231
           CKQQIA F KA +DE++RLE AKEEL S+KYHPL+D + M+  +N+ H K+R K
Sbjct: 181 CKQQIAAFNKAYRDEERRLETAKEELASMKYHPLRDCRPMSGGDNE-HNKKRKK 233

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BLAST of Cucsa.022190 vs. TrEMBL
Match: A0A061F165_THECC (F-box family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_025794 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.1e-69
Identity = 137/243 (56.38%), Postives = 183/243 (75.31%), Query Frame = 1


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSS 61
           +ELPDELW +IL+IG+K+    +KDLC +SIS  RL RLS+ DSLWSHLL  D+P+  SS
Sbjct: 5   NELPDELWRKILEIGIKSSNFIFKDLCSISISCRRLHRLSNEDSLWSHLLSVDFPNQISS 64

Query: 62  FPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWT 121
            PSS SS KSLYKIR ER+R RK   + RAVLRKESQ++EH R++ ++E RL EE  K  
Sbjct: 65  PPSS-SSPKSLYKIRFERERERKLLVYKRAVLRKESQVSEHLRKLREIEVRLSEEREKLK 124

Query: 122 TSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQI 181
           ++ +E SNL  V +A+VALNVWQPEV+R RQKQ VEQC V V+SR+  L+ME+KLC QQ+
Sbjct: 125 SAVSELSNLHKVSQASVALNVWQPEVVRGRQKQTVEQCVVPVESRIHALEMEVKLCNQQL 184

Query: 182 AIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRS-KDAINSKVKQL 241
            +F KA +DE +RL++AKEEL S+KYHPL+D+K  ++ +++  +KR+  K  INS  KQ 
Sbjct: 185 QVFDKAYRDENRRLDVAKEELQSMKYHPLRDYKLTSNESHENKMKRKKLKTCINSPDKQG 244

Query: 242 RST 244
           ++T
Sbjct: 245 KTT 246

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BLAST of Cucsa.022190 vs. TrEMBL
Match: A0A0B2RQP6_GLYSO (F-box protein SKIP24 OS=Glycine soja GN=glysoja_011176 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.7e-69
Identity = 136/236 (57.63%), Postives = 175/236 (74.15%), Query Frame = 1


Query: 4   LPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS--S 63
           LPDELW +IL+IG+++   +YKDLCCVSIS  RL RLS  + LW+ LLFSDYP S S  S
Sbjct: 6   LPDELWRRILEIGIESNGFSYKDLCCVSISCRRLHRLSSEEPLWNRLLFSDYPQSQSHPS 65

Query: 64  FPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWT 123
             SS+SSSKSLY++R ERD+ R+ AAH RAVLRKESQ+AEH RR+  ++ RL +ET K T
Sbjct: 66  SSSSSSSSKSLYRLRFERDKERRIAAHRRAVLRKESQVAEHSRRLKDMKTRLAQETTKAT 125

Query: 124 TSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQI 183
            +  + SNLR +R+A VALNVWQPEV+R RQKQ+VEQ  V  + R+  L+ME KLCKQQI
Sbjct: 126 QTAQDLSNLRRLRQAFVALNVWQPEVVRGRQKQMVEQSVVPAECRIHALEMEFKLCKQQI 185

Query: 184 AIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINSKV 238
              +K+ KDEK+RL+ AKEEL S+KYHP+++HK  +   N+ H+KR+     NS V
Sbjct: 186 LGLEKSYKDEKRRLDTAKEELASMKYHPVQEHKPTSGGENE-HVKRKKLKICNSYV 240

[Close]

BLAST of Cucsa.022190 vs. TrEMBL
Match: I1N8G1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G119400 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.7e-69
Identity = 136/236 (57.63%), Postives = 175/236 (74.15%), Query Frame = 1


Query: 4   LPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS--S 63
           LPDELW +IL+IG+++   +YKDLCCVSIS  RL RLS  + LW+ LLFSDYP S S  S
Sbjct: 6   LPDELWRRILEIGIESNGFSYKDLCCVSISCRRLHRLSSEEPLWNRLLFSDYPQSQSHPS 65

Query: 64  FPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWT 123
             SS+SSSKSLY++R ERD+ R+ AAH RAVLRKESQ+AEH RR+  ++ RL +ET K T
Sbjct: 66  SSSSSSSSKSLYRLRFERDKERRIAAHRRAVLRKESQVAEHSRRLKDMKTRLAQETTKAT 125

Query: 124 TSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQI 183
            +  + SNLR +R+A VALNVWQPEV+R RQKQ+VEQ  V  + R+  L+ME KLCKQQI
Sbjct: 126 QTAQDLSNLRRLRQAFVALNVWQPEVVRGRQKQMVEQSVVPAECRIHALEMEFKLCKQQI 185

Query: 184 AIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINSKV 238
              +K+ KDEK+RL+ AKEEL S+KYHP+++HK  +   N+ H+KR+     NS V
Sbjct: 186 LGLEKSYKDEKRRLDTAKEELASMKYHPVQEHKPTSGGENE-HVKRKKLKICNSYV 240

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BLAST of Cucsa.022190 vs. TAIR10
Match: AT1G08710.2 (AT1G08710.2 F-box family protein)

HSP 1 Score: 239.2 bits (609), Expect = 2.7e-63
Identity = 125/235 (53.19%), Postives = 174/235 (74.04%), Query Frame = 1


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  FPSSASS-SKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 121
             SS+ S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 181
            +S  +FS+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KLCKQQ
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQ 183

Query: 182 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIK-RRSKDAIN 235
           I    +AL++ K R ++A +EL S+KYHPL+D+KS+ + +  ++ K ++ K +IN
Sbjct: 184 IMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

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BLAST of Cucsa.022190 vs. NCBI nr
Match: gi|449453117|ref|XP_004144305.1| (PREDICTED: F-box protein SKIP24 [Cucumis sativus])

HSP 1 Score: 476.1 bits (1224), Expect = 3.7e-131
Identity = 242/243 (99.59%), Postives = 242/243 (99.59%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINSKVKQL 240
           IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHK MNSSNNDTHIKRRSKDAINSKVKQL
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKYMNSSNNDTHIKRRSKDAINSKVKQL 240

Query: 241 RST 244
           RST
Sbjct: 241 RST 243

[Close]

BLAST of Cucsa.022190 vs. NCBI nr
Match: gi|659111518|ref|XP_008455770.1| (PREDICTED: F-box protein SKIP24 [Cucumis melo])

HSP 1 Score: 433.0 bits (1112), Expect = 3.6e-118
Identity = 225/242 (92.98%), Postives = 228/242 (94.21%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTSFTEFSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180
           TT+ TE SNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINS 238
           LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNND+HIKRRSKDAIN 
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINC 240

[Close]

BLAST of Cucsa.022190 vs. NCBI nr
Match: gi|694443345|ref|XP_009348272.1| (PREDICTED: F-box protein SKIP24 [Pyrus x bretschneideri])

HSP 1 Score: 276.6 bits (706), Expect = 4.3e-71
Identity = 141/229 (61.57%), Postives = 178/229 (77.73%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MS LPDELW +IL+IGV+  + +YKDLC +SISS RLRRLSD DSLWSHLL SD P+SSS
Sbjct: 1   MSALPDELWRRILEIGVQGGSFSYKDLCRISISSARLRRLSDEDSLWSHLLSSDLPTSSS 60

Query: 61  SFPS-SASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGK 120
           S  S + S+SKSLYKIR ER+R +K AAH RAVLRKESQ+ E   ++ ++E RL EET K
Sbjct: 61  SITSPNPSTSKSLYKIRFERERDKKMAAHRRAVLRKESQVVERSMKLREMEARLAEETQK 120

Query: 121 WTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQ 180
              + TE SNL  +R+A+VALNVWQPE+IR RQKQIVEQC V V+SR  +L+MELKLCKQ
Sbjct: 121 MQAALTELSNLSRIRQASVALNVWQPEIIRGRQKQIVEQCVVPVESRFHSLEMELKLCKQ 180

Query: 181 QIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRR 229
            I   +KA KDEK+RL L +EEL S++YHPL++H+ +N  + + +IKR+
Sbjct: 181 HILGLEKAHKDEKRRLALVEEELQSMRYHPLRNHEQINCRDIEYNIKRK 229

[Close]

BLAST of Cucsa.022190 vs. NCBI nr
Match: gi|823264498|ref|XP_012464993.1| (PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP24 [Gossypium raimondii])

HSP 1 Score: 273.5 bits (698), Expect = 3.6e-70
Identity = 138/239 (57.74%), Postives = 178/239 (74.48%), Query Frame = 1


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSS 61
           +ELPDELW +IL+IG+K    T+KDLCCVSI S RL RLS+ D LWSHL+  D+P+ +SS
Sbjct: 5   NELPDELWRKILEIGIKASNFTFKDLCCVSICSRRLHRLSNEDLLWSHLISVDFPNQTSS 64

Query: 62  FPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWT 121
               +SS+KSLYKIR ER++ RK  AH RAVLRKESQ++EH R++ ++E RL EE  K  
Sbjct: 65  ----SSSAKSLYKIRFEREKERKLWAHKRAVLRKESQVSEHLRKLREIEVRLREERNKLN 124

Query: 122 TSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQI 181
           +S  E SNL  V +A+VALNVWQPEV+R RQKQ+VEQC V V+SR+  LDME+KLC QQ+
Sbjct: 125 SSLLELSNLHKVSQASVALNVWQPEVVRGRQKQMVEQCVVPVESRVHALDMEVKLCNQQL 184

Query: 182 AIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRS-KDAINSKVKQ 240
            +F KA +DEK+RL+ AKEEL S+KYHPL+D+   ++ N +   KR+  K  INS  KQ
Sbjct: 185 QVFDKAYRDEKRRLDTAKEELKSMKYHPLRDYTLSSTENQENRKKRKKLKTCINSPDKQ 239

[Close]

BLAST of Cucsa.022190 vs. NCBI nr
Match: gi|657989410|ref|XP_008386906.1| (PREDICTED: F-box protein SKIP24 isoform X2 [Malus domestica])

HSP 1 Score: 272.7 bits (696), Expect = 6.2e-70
Identity = 138/229 (60.26%), Postives = 178/229 (77.73%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MS LPDELW +IL+IGV++ + +YKDLC +SISS RLRRLSD DSLWSHLL SD P+SSS
Sbjct: 1   MSALPDELWRRILEIGVQSGSFSYKDLCRISISSARLRRLSDEDSLWSHLLSSDLPTSSS 60

Query: 61  SFPS-SASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGK 120
           S  S + S+SKSLYKIR ER+R +K AAH RAVLRKESQ+ E   ++ ++E RL EET K
Sbjct: 61  SITSPNPSTSKSLYKIRFERERDKKMAAHRRAVLRKESQVVERSMKLREMEARLAEETQK 120

Query: 121 WTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQ 180
              + TE S L  +R+A+VALNVWQPE++R RQKQIVEQC V V+SR  +L+MELKLCKQ
Sbjct: 121 MQATLTELSXLSRIRQASVALNVWQPEIVRGRQKQIVEQCVVPVESRFHSLEMELKLCKQ 180

Query: 181 QIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRR 229
            I   +KA KDEK+RL L +EEL S++YHPL++H+ ++  + + +IKR+
Sbjct: 181 HILGLEKAHKDEKRRLALVEEELQSMRYHPLRNHEXIDCGDIEYNIKRK 229

The following BLAST results are available for this feature:

BLAST of Cucsa.022190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKI24_ARATH	4.8e-62	53.19	F-box protein SKIP24 OS=Arabidopsis thaliana GN=SKIP24 PE=1 SV=2	[more]

BLAST of Cucsa.022190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0S2_CUCSA	2.6e-131	99.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G416990 PE=4 SV=1	[more]
A0A067KTZ6_JATCU	9.6e-70	58.97	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02647 PE=4 SV=1	[more]
A0A061F165_THECC	2.1e-69	56.38	F-box family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_025794 PE=4 S...	[more]
A0A0B2RQP6_GLYSO	3.7e-69	57.63	F-box protein SKIP24 OS=Glycine soja GN=glysoja_011176 PE=4 SV=1	[more]
I1N8G1_SOYBN	3.7e-69	57.63	Uncharacterized protein OS=Glycine max GN=GLYMA_19G119400 PE=4 SV=1	[more]

BLAST of Cucsa.022190 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08710.2	2.7e-63	53.19	F-box family protein	[more]

BLAST of Cucsa.022190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453117\|ref\|XP_004144305.1\|	3.7e-131	99.59	PREDICTED: F-box protein SKIP24 [Cucumis sativus]	[more]
gi\|659111518\|ref\|XP_008455770.1\|	3.6e-118	92.98	PREDICTED: F-box protein SKIP24 [Cucumis melo]	[more]
gi\|694443345\|ref\|XP_009348272.1\|	4.3e-71	61.57	PREDICTED: F-box protein SKIP24 [Pyrus x bretschneideri]	[more]
gi\|823264498\|ref\|XP_012464993.1\|	3.6e-70	57.74	PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP24 [Gossypium raimondii]	[more]
gi\|657989410\|ref\|XP_008386906.1\|	6.2e-70	60.26	PREDICTED: F-box protein SKIP24 isoform X2 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR001810	F-box_dom
IPR001810	F-box_dom
IPR001810	F-box_dom
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005515	protein binding
GO:0005515	protein binding
GO:0005515	protein binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.022190.5	Cucsa.022190.5	mRNA
Cucsa.022190.4	Cucsa.022190.4	mRNA
Cucsa.022190.3	Cucsa.022190.3	mRNA
Cucsa.022190.2	Cucsa.022190.2	mRNA
Cucsa.022190.1	Cucsa.022190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 1..76 score: 3.27
None	No IPR available	unknown	Coil	Coil	coord: 92..112 scor
None	No IPR available	PANTHER	PTHR15537	FAMILY NOT NAMED	coord: 1..176 score: 1.5
None	No IPR available	PANTHER	PTHR15537:SF5	F-BOX PROTEIN SKIP24	coord: 1..176 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.022190	Csa4G416990	Cucumber (Chinese Long) v2	cgycuB463
Cucsa.022190	MELO3C019160	Melon (DHL92) v3.5.1	cgymeB535
Cucsa.022190	CSPI04G18680	Wild cucumber (PI 183967)	cgycpiB489
Cucsa.022190	MELO3C019160.2	Melon (DHL92) v3.6.1	cgymedB535
Cucsa.022190	CsaV3_4G029050	Cucumber (Chinese Long) v3	cgycucB504
Cucsa.022190	Bhi03G002093	Wax gourd	cgywgoB657

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None