Cucsa.022190.5 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.022190.5
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	F-box protein SKIP24
Location	scaffold00313 : 89590 .. 93966 (-)
Sequence length	1945

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGATAGTTATAGTATTGTGTTGGATGATGTTTGGAATTGGATTCTAATGCGTAGGGCTCTTTCACATTCTTCATTTCCAACTTTGCAAATCCCAAAATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCTCATCTTCTCTTCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTACAAGAAAGGATTCATGAACCTGAACCATATCTCTTAATTTCTCTCTTCCAATCTCTCTCAATTCATTATTCTTTTCTTTTGTTCATCTTCTGTTTCGGTTAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGTCCTTCACTGAATTCTCTAATCTACGCACAGTCAGGTAGGGTTCGGCAATTGATTCAAAATCCTTCAGTAATATTTTCTGTTTCTTTTCTCGCTTGGTGTTTTAGTGATATGTCATGTGTGCTTGTGCAACTTGGTTGCTTGCAATCTGTAAAGTTTTTTTATTGGAATTGTGTTTTCGTTGAGTTTTTAAAAGGGGGAGACTACAATAGCTGATTATTGTCATTGTATGTAAATTCAATAGAATCCTCTTACTTAAATCTTGAGTTCAACAACATCTGGGGTCGAGGCGCATGAATCTCTAACCTTTTGGATCGAGGGATATGCCTAAGCCAGTTTGAACTATGCTTAGGTTGGCAAGATCATTTTACTAGGTCGAGTGGTATTCAGTTATTTGTTGATAACAAAGCCCAATGGATTCATTTGGAACCTTTCTACCTCTTCACGTGAATGCTAATATGTTGATTTCGGTTTGAAGTCAGAATTTTTAGATATGATAATTGTGTTTTATCGTTTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCAAAAAGCACTTGTAAGTTTTGAATGTGGAAACATTATTTTTCTATCTGTTAAGAACTATAATTTTAATTTCTTATACTGCTTGCCACAGAAAGATGAAAAAAAGAGATTGGAATTAGCCAAAGAAGAGTTAACTTCATTGAAGTATCACCCTCTTAAGGATCATAAATCTATGAATAGCAGTAATAATGACACTCACATCAAGAGGAGGTCCAAGGATGCAATAAATGTAAGGTTCTTGCTTGTTGATTATGCTTCAATTTTTTTTTTATTGTGAATTTTGATAATTTCTTCGTGTTGCTGATGGTTTGGTTGCTATGAAATCTAACTTTCCCGTGAATTAATGAATTCTAATGTGTGCATGTGCACTGTGCTCTATTAGCATTTTTCTTCTTCAAACCATCATTATTGTTTTCTCATGATGTTACCGCTTCTCCCAGTTTTACTAAATAAACTCATTAGGATACTACATATTTCTTATGAAGGTATTTTCCTAGTCTGGCCATGGATTGATGCTCGCGTTCGTTGGTAGATTATCTGATGTCTTGAACTTAATGTCTTTTTTTAACTTTGACCTCCATAAATAACATTCACATAGAGGGTGGGGGTGGGTTGAAGGGAGGGGAGGTTTTCTTATTGTGAATGATTTGTAATTAGGTTGGAATCTTGGATTGATCTATATTTTATATTATATACTTGATTGATTAAGTTGTAGACACATATATACTTTACCTTTTTTTCCCACAAATAAATTGGAAGAGAAAATTAGCTTACTTTTTTATTACTTCACTGTGGAAATTGTGGCTTACCTCTTTTTTCATTAGATACATAATAATAACCAAATGTTGGCACATCAACTGGCTTGTTTTCCTGTGGTTATTTTATTTTCTGGTTAAAATTTCTTCAACCTTCATGACCACAGTATTGTTTATTCCTCAACTTTCACCAGCCCTACTTAGATAATATATTCTCCTTTCTTGCCTATATTGGTACAAATGGTACCCACCCCTTATATGTACTGAATATGTTGCATGTTTGCTTAAAATCCAAGTGAGAACTCAAACTGATATGATAAATATACTTGATTACCAAATTTTCTAGAGCAAGGTAAAACAGCTACGCAGTACATGATTGGGGGAGCATTGCCTGTTGAAGAATGAGCCTGTCCTCAACATATAGGCAGTGGAACTAATAAAAACAGTTATGAATTCCGGTTGAGATGAACGTAACCACCAAAGTGTTCTGCACTAGGTGCAAAGTAATGATAAGATCGAACTGTTATATCAAACATCATATGGAGTTTTACATTTTATTCAAATGGGGAATTTTATAAATCAGTTGGAAGATCATCAATAAGCGCTTCTTTGACCCAAGAAAATATATGTCAACTCCCAATTTGGCCTACAGATAAAGAAACTCATGGCAAATTAAATCCAAGTCAGGACAACAACACTAATTAACTGTTGCAGTTCCCACGTTCATCCAGGTACTCCCCTTCACTCTTCATTTCTCTCCTTTCCCTCTCTTTGGCAGATTATCTCGTCTATTGTGTTCAAATTGGTCATTTTCTCTTCACCATTGCAAGTTTTTTCCTTCCAGATCTGTTTGTATGTGTGTGTGTTTTCCAGATTCATAGCTCTAAATGCTCTACACTTTTTAGATCCGAGACCCTAACCTCCTCAGCTGCCTCAAGGAAAACTAAAAAAAAATCACTCTTCTCGCAAGAAAGAGCTTAGTTATGTCTAATGATCAAATGATCAAGAGGTTCGTGGTTCATATCTCCCACCCACACTTGTACTCAAATCAGCCTCTTGGTGCTATCTTTCTTATTCCCTCATCTACTGTAGCTTCCTTGCCGTTGGTTCTTGTGTTTTTTGTATTTGAGTTAAAATAACAAAGGAATAGCTTGGTAGGGGACAGCTAGTGCTTGAATCTTGGTGGGCGGGAGGCAACTGCTTAAGCTTTGTTCTATCCTTTCAATATTAGTCGATGATAGGACATACATGTTCAATCTGTATTTTTGCTGCATGAATTTCTTCATTCCTTCCTTGAGAAAATTTTCTCTGATATGTTTCTGTCTTTGTTTTCACTCCTTTTTTATTCTATTTTTGTCTTCGTTTGTTTGATTGGATCTGTTTTTTTCCCGATTTAGTTTCATAAGTTTCATTTGTATGAAAGAAAATCAGTTATGGGTTGCATGAATGTTTCATGTTGGAATATCATTATGAACTGAGGATGTATTTGGTGCATGTGCGAGAGTAGGCCAAGATTACAAATTCATATAAAATTATATTAAACTATAATTGATACTAGTATATCTGTTTGAACATGTGTGATCGCAAATAGACTAGGAAAGAATTCCTTCCTTCATTAGGATGAGTTGTCATTCGTGTTTGGAAAGAGGATTGGTCTAGAGACTCCACGGGATATGGCATCGAATGACAATGAGCACTTGGGGCAGATGCGCATGTGGAAGGATCTCAAGAACATTATATTTCAGTTCCCTCTGATGTTTGGCGCAACAGCCACTGTATACAAAGACTGTTGTAGGTCTGACTCCAATAGGGACTAAAATTGGTGAGGTAGTAAGAAGAAATGAACAACATATCACTCAAGATATGTTAAACGTGGTATGGATGATTACAATAAACATGCAAACAAGGCAACAGCTTGAGAGGATTGCATCTTGGTTTAAATCAAAGCATGCTATGGTGGAGTCCAGACAACGAAAGGAAGTGGTGGAGAGAGATTCCCTCAATTGTTAGAGTTGTTCCAACGGGTTAAGGTCAAACTAATGGATATCATATTCACGAATGTAGATGGAGCAAAAAAATTCCTTGCCTATTCCAATCAAGCTGAAAAGTACTTGTTGAATGCACTCTTGGGTAAAGGTGAATAAATAGCCTGTCTTGCAACAAAATCAATTTGCTTGGTTTGGAAAAGAACAAATTTTTTAAATCAACTCAATTTGATCCTTTTTTTTTTCATATTAAAACTGTGTTTACTTGTTTTTTTTCTTTTAAGTTTGAACCACAGACTTGTTGATTCTTAGCGTACACTAGTGTCAGTATTATTATTGCACGTTCTTTTATCTATATTTTCTTACCGATTAACATAGATGTGAAGTTATTGTGTTGTGTA

mRNA sequence

GAGGATAGTTATAGTATTGTGTTGGATGATGTTTGGAATTGGATTCTAATGCGTAGGGCTCTTTCACATTCTTCATTTCCAACTTTGCAAATCCCAAAATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCtcatcttctcttctccgattacccttcatcctcttcttcttttccatcttccgcttcctcctcAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGTCCTTCACTGAATTCTCTAATCTACGCACAGTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTAAAGATGAAAAAAAGAGATTGGAATTAGCCAAAGAAGAGTTAACTTCATTGAAGTATCACCCTCTTAAGGATCATAAATCTATGAATAGCAGTAATAATGACACTCACATCAAGAGGAGGTCCAAGGATGCAATAAATAGCAAGGTAAAACAGCTACGCAGTACATGATTGGGGGAGCATTGCCTGTTGAAGAATGAGCCTGTCCTCAACATATAGGCAGTGGAACTAATAAAAACAGTTATGAATTCCGGTTGAGATGAACGTAACCACCAAAGTGTTCTGCACTAGGTGCAAAGTAATGATAAGATCGAACTGTTATATCAAACATCATATGGAGTTTTACATTTTATTCAAATGGGGAATTTTATAAATCAGTTGGAAGATCATCAATAAGCGCTTCTTTGACCCAAGAAAATATATGTCAACTCCCAATTTGGCCTACAGATAAAGAAACTCATGGCAAATTAAATCCAAGTCAGGACAACAACACTAATTAACTGTTGCAGTTCCCACGTTCATCCAGACTAGGAAAGAATTCCTTCCTTCATTAGGATGAGTTGTCATTCGTGTTTGGAAAGAGGATTGGTCTAGAGACTCCACGGGATATGGCATCGAATGACAATGAGCACTTGGGGCAGATGCGCATGTGGAAGGATCTCAAGAACATTATATTTCAGTTCCCTCTGATGTTTGGCGCAACAGCCACTGTATACAAAGACTGTTGTAGGTCTGACTCCAATAGGGACTAAAATTGGTGAGGTAGTAAGAAGAAATGAACAACATATCACTCAAGATATGTTAAACGTGGTATGGATGATTACAATAAACATGCAAACAAGGCAACAGCTTGAGAGGATTGCATCTTGGTTTAAATCAAAGCATGCTATGGTGGAGTCCAGACAACGAAAGGAAGTGGTGGAGAGAGATTCCCTCAATTGTTAGAGTTGTTCCAACGGGTTAAGGTCAAACTAATGGATATCATATTCACGAATGTAGATGGAGCAAAAAAATTCCTTGCCTATTCCAATCAAGCTGAAAAGTACTTGTTGAATGCACTCTTGGGTAAAGGTGAATAAATAGCCTGTCTTGCAACAAAATCAATTTGCTTGGTTTGGAAAAGAACAAATTTTTTAAATCAACTCAATTTGATCCTTTTTTTTTTCATATTAAAACTGTGTTTACTTGTTTTTTTTCTTTTAAGtttgaaccacagacttgttgattcttagcgtacactagtgtcagtATTATTATTGCACGTTCTTTTATCTATATTTTCTTACCGATTAACATAGATGTGAAGTTATTGTGTTGTGTA

Coding sequence (CDS)

ATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCTCATCTTCTCTTCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGTCCTTCACTGAATTCTCTAATCTACGCACAGTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTAA

Protein sequence

MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL*

Homology

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BLAST of Cucsa.022190.5 vs. Swiss-Prot
Match: SKI24_ARATH (F-box protein SKIP24 OS=Arabidopsis thaliana GN=SKIP24 PE=1 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 6.3e-48
Identity = 100/176 (56.82%), Postives = 132/176 (75.00%), Query Frame = 1


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  FPSSASS-SKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 121
             SS+ S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
            +S  +FS+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KL
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKL 179

[Close]

BLAST of Cucsa.022190.5 vs. TrEMBL
Match: A0A0A0L0S2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G416990 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 5.9e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
           TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 176

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BLAST of Cucsa.022190.5 vs. TrEMBL
Match: M5WCZ2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021739mg PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.0e-52
Identity = 111/181 (61.33%), Postives = 132/181 (72.93%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYP---- 60
           MS LP+ELW +IL+IGV+   ++YKDLCC+SISS RL RL D D LWSHLL SD+P    
Sbjct: 1   MSALPEELWRRILEIGVQRRGVSYKDLCCLSISSRRLHRLCDEDFLWSHLLSSDFPPFFS 60

Query: 61  -SSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIE 120
            SSSS   + +SS K LYK+R ERDR +K AAH RAVLRKESQ+ E + R+  +E RL E
Sbjct: 61  PSSSSITSAHSSSCKYLYKLRYERDRDKKIAAHRRAVLRKESQVLERFMRLRDMETRLAE 120

Query: 121 ETGKWTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 177
           ET K   +  E SNL  VR+A+VALNVWQPE+IR RQKQIVEQC V V+SR   L MELK
Sbjct: 121 ETNKMRATLAELSNLSNVRQASVALNVWQPEIIRGRQKQIVEQCVVPVESRFHVLHMELK 180

[Close]

BLAST of Cucsa.022190.5 vs. TrEMBL
Match: A0A0D2W511_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113800 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-51
Identity = 106/175 (60.57%), Postives = 134/175 (76.57%), Query Frame = 1


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSS 61
           +ELPDELW +IL+IG+K    T+KDLCCVSI S RL RLS+ D LWSHL+  D+P+ +SS
Sbjct: 5   NELPDELWRKILEIGIKASNFTFKDLCCVSICSRRLHRLSNEDLLWSHLISVDFPNQTSS 64

Query: 62  FPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWT 121
               +SS+KSLYKIR ER++ RK  AH RAVLRKESQ++EH R++ ++E RL EE  K  
Sbjct: 65  ----SSSAKSLYKIRFEREKERKLWAHKRAVLRKESQVSEHLRKLREIEVRLREERNKLN 124

Query: 122 TSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
           +S  E SNL  V +A+VALNVWQPEV+R RQKQ+VEQC V V+SR+  LDME+KL
Sbjct: 125 SSLLELSNLHKVSQASVALNVWQPEVVRGRQKQMVEQCVVPVESRVHALDMEVKL 175

[Close]

BLAST of Cucsa.022190.5 vs. TrEMBL
Match: A0A0D2TZB0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113800 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-51
Identity = 106/175 (60.57%), Postives = 134/175 (76.57%), Query Frame = 1


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSS 61
           +ELPDELW +IL+IG+K    T+KDLCCVSI S RL RLS+ D LWSHL+  D+P+ +SS
Sbjct: 5   NELPDELWRKILEIGIKASNFTFKDLCCVSICSRRLHRLSNEDLLWSHLISVDFPNQTSS 64

Query: 62  FPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWT 121
               +SS+KSLYKIR ER++ RK  AH RAVLRKESQ++EH R++ ++E RL EE  K  
Sbjct: 65  ----SSSAKSLYKIRFEREKERKLWAHKRAVLRKESQVSEHLRKLREIEVRLREERNKLN 124

Query: 122 TSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
           +S  E SNL  V +A+VALNVWQPEV+R RQKQ+VEQC V V+SR+  LDME+KL
Sbjct: 125 SSLLELSNLHKVSQASVALNVWQPEVVRGRQKQMVEQCVVPVESRVHALDMEVKL 175

[Close]

BLAST of Cucsa.022190.5 vs. TrEMBL
Match: G7L2L8_MEDTR (F-box SKIP24-like protein OS=Medicago truncatula GN=MTR_7g087140 PE=4 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 1.9e-51
Identity = 110/176 (62.50%), Postives = 136/176 (77.27%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MS LP ELW +IL+IG++   L+YKDLCC+SIS   L RLS  DSLW+ LL SD+PSSS+
Sbjct: 1   MSSLPIELWTKILEIGIQDCGLSYKDLCCISISCRLLHRLSVEDSLWNRLLSSDFPSSST 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           S  SS+SSSKSLYK+R ERD+ RK AAH R VLRKESQI EH RR+  ++  + +E  K 
Sbjct: 61  S--SSSSSSKSLYKLRFERDKERKIAAHRRVVLRKESQILEHSRRLHDIQTCVSQEKLKA 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
             + TE S+LR VREA+VALNVWQPEV+R RQKQ+VEQC V  +SR+RTL+MEL+L
Sbjct: 121 IQTSTELSHLRRVREASVALNVWQPEVVRGRQKQMVEQCVVPAESRIRTLEMELRL 174

[Close]

BLAST of Cucsa.022190.5 vs. TAIR10
Match: AT1G08710.2 (AT1G08710.2 F-box family protein)

HSP 1 Score: 191.8 bits (486), Expect = 3.6e-49
Identity = 100/176 (56.82%), Postives = 132/176 (75.00%), Query Frame = 1


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  FPSSASS-SKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 121
             SS+ S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
            +S  +FS+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KL
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKL 179

[Close]

BLAST of Cucsa.022190.5 vs. NCBI nr
Match: gi|449453117|ref|XP_004144305.1| (PREDICTED: F-box protein SKIP24 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 8.4e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
           TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 176

[Close]

BLAST of Cucsa.022190.5 vs. NCBI nr
Match: gi|659111518|ref|XP_008455770.1| (PREDICTED: F-box protein SKIP24 [Cucumis melo])

HSP 1 Score: 318.9 bits (816), Expect = 5.5e-84
Identity = 167/181 (92.27%), Postives = 169/181 (93.37%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTSFTEFSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 177
           TT+ TE SNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

[Close]

BLAST of Cucsa.022190.5 vs. NCBI nr
Match: gi|694443345|ref|XP_009348272.1| (PREDICTED: F-box protein SKIP24 [Pyrus x bretschneideri])

HSP 1 Score: 222.2 bits (565), Expect = 7.0e-55
Identity = 115/177 (64.97%), Postives = 139/177 (78.53%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MS LPDELW +IL+IGV+  + +YKDLC +SISS RLRRLSD DSLWSHLL SD P+SSS
Sbjct: 1   MSALPDELWRRILEIGVQGGSFSYKDLCRISISSARLRRLSDEDSLWSHLLSSDLPTSSS 60

Query: 61  SFPS-SASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGK 120
           S  S + S+SKSLYKIR ER+R +K AAH RAVLRKESQ+ E   ++ ++E RL EET K
Sbjct: 61  SITSPNPSTSKSLYKIRFERERDKKMAAHRRAVLRKESQVVERSMKLREMEARLAEETQK 120

Query: 121 WTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
              + TE SNL  +R+A+VALNVWQPE+IR RQKQIVEQC V V+SR  +L+MELKL
Sbjct: 121 MQAALTELSNLSRIRQASVALNVWQPEIIRGRQKQIVEQCVVPVESRFHSLEMELKL 177

[Close]

BLAST of Cucsa.022190.5 vs. NCBI nr
Match: gi|657989408|ref|XP_008386905.1| (PREDICTED: F-box protein SKIP24 isoform X1 [Malus domestica])

HSP 1 Score: 220.3 bits (560), Expect = 2.6e-54
Identity = 113/177 (63.84%), Postives = 139/177 (78.53%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MS LPDELW +IL+IGV++ + +YKDLC +SISS RLRRLSD DSLWSHLL SD P+SSS
Sbjct: 1   MSALPDELWRRILEIGVQSGSFSYKDLCRISISSARLRRLSDEDSLWSHLLSSDLPTSSS 60

Query: 61  SFPS-SASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGK 120
           S  S + S+SKSLYKIR ER+R +K AAH RAVLRKESQ+ E   ++ ++E RL EET K
Sbjct: 61  SITSPNPSTSKSLYKIRFERERDKKMAAHRRAVLRKESQVVERSMKLREMEARLAEETQK 120

Query: 121 WTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
              + TE S L  +R+A+VALNVWQPE++R RQKQIVEQC V V+SR  +L+MELKL
Sbjct: 121 MQATLTELSXLSRIRQASVALNVWQPEIVRGRQKQIVEQCVVPVESRFHSLEMELKL 177

[Close]

BLAST of Cucsa.022190.5 vs. NCBI nr
Match: gi|657989410|ref|XP_008386906.1| (PREDICTED: F-box protein SKIP24 isoform X2 [Malus domestica])

HSP 1 Score: 220.3 bits (560), Expect = 2.6e-54
Identity = 113/177 (63.84%), Postives = 139/177 (78.53%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MS LPDELW +IL+IGV++ + +YKDLC +SISS RLRRLSD DSLWSHLL SD P+SSS
Sbjct: 1   MSALPDELWRRILEIGVQSGSFSYKDLCRISISSARLRRLSDEDSLWSHLLSSDLPTSSS 60

Query: 61  SFPS-SASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGK 120
           S  S + S+SKSLYKIR ER+R +K AAH RAVLRKESQ+ E   ++ ++E RL EET K
Sbjct: 61  SITSPNPSTSKSLYKIRFERERDKKMAAHRRAVLRKESQVVERSMKLREMEARLAEETQK 120

Query: 121 WTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 177
              + TE S L  +R+A+VALNVWQPE++R RQKQIVEQC V V+SR  +L+MELKL
Sbjct: 121 MQATLTELSXLSRIRQASVALNVWQPEIVRGRQKQIVEQCVVPVESRFHSLEMELKL 177

The following BLAST results are available for this feature:

BLAST of Cucsa.022190.5 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKI24_ARATH	6.3e-48	56.82	F-box protein SKIP24 OS=Arabidopsis thaliana GN=SKIP24 PE=1 SV=2	[more]

BLAST of Cucsa.022190.5 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0S2_CUCSA	5.9e-93	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G416990 PE=4 SV=1	[more]
M5WCZ2_PRUPE	5.0e-52	61.33	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021739mg PE=4 S...	[more]
A0A0D2W511_GOSRA	1.5e-51	60.57	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113800 PE=4 SV=1	[more]
A0A0D2TZB0_GOSRA	1.5e-51	60.57	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113800 PE=4 SV=1	[more]
G7L2L8_MEDTR	1.9e-51	62.50	F-box SKIP24-like protein OS=Medicago truncatula GN=MTR_7g087140 PE=4 SV=2	[more]

BLAST of Cucsa.022190.5 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08710.2	3.6e-49	56.82	F-box family protein	[more]

BLAST of Cucsa.022190.5 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453117\|ref\|XP_004144305.1\|	8.4e-93	100.00	PREDICTED: F-box protein SKIP24 [Cucumis sativus]	[more]
gi\|659111518\|ref\|XP_008455770.1\|	5.5e-84	92.27	PREDICTED: F-box protein SKIP24 [Cucumis melo]	[more]
gi\|694443345\|ref\|XP_009348272.1\|	7.0e-55	64.97	PREDICTED: F-box protein SKIP24 [Pyrus x bretschneideri]	[more]
gi\|657989408\|ref\|XP_008386905.1\|	2.6e-54	63.84	PREDICTED: F-box protein SKIP24 isoform X1 [Malus domestica]	[more]
gi\|657989410\|ref\|XP_008386906.1\|	2.6e-54	63.84	PREDICTED: F-box protein SKIP24 isoform X2 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.022190	Cucsa.022190	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.022190.5	Cucsa.022190.5-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.022190.5.three_prime_UTR.3	Cucsa.022190.5.three_prime_UTR.3	three_prime_UTR
Cucsa.022190.5.three_prime_UTR.2	Cucsa.022190.5.three_prime_UTR.2	three_prime_UTR
Cucsa.022190.5.three_prime_UTR.1	Cucsa.022190.5.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.022190.5.CDS.4	Cucsa.022190.5.CDS.4	CDS
Cucsa.022190.5.CDS.3	Cucsa.022190.5.CDS.3	CDS
Cucsa.022190.5.CDS.2	Cucsa.022190.5.CDS.2	CDS
Cucsa.022190.5.CDS.1	Cucsa.022190.5.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.022190.5.five_prime_UTR.1	Cucsa.022190.5.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 1..76 score: 3.27
None	No IPR available	unknown	Coil	Coil	coord: 92..112 scor
None	No IPR available	PANTHER	PTHR15537	FAMILY NOT NAMED	coord: 1..176 score: 1.5
None	No IPR available	PANTHER	PTHR15537:SF5	F-BOX PROTEIN SKIP24	coord: 1..176 score: 1.5