Cucsa.022190.4 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.022190.4
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	F-box protein SKIP24
Location	scaffold00313 : 89590 .. 93966 (-)
Sequence length	1979

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGATAGTTATAGTATTGTGTTGGATGATGTTTGGAATTGGATTCTAATGCGTAGGGCTCTTTCACATTCTTCATTTCCAACTTTGCAAATCCCAAAATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCTCATCTTCTCTTCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTACAAGAAAGGATTCATGAACCTGAACCATATCTCTTAATTTCTCTCTTCCAATCTCTCTCAATTCATTATTCTTTTCTTTTGTTCATCTTCTGTTTCGGTTAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGTCCTTCACTGAATTCTCTAATCTACGCACAGTCAGGTAGGGTTCGGCAATTGATTCAAAATCCTTCAGTAATATTTTCTGTTTCTTTTCTCGCTTGGTGTTTTAGTGATATGTCATGTGTGCTTGTGCAACTTGGTTGCTTGCAATCTGTAAAGTTTTTTTATTGGAATTGTGTTTTCGTTGAGTTTTTAAAAGGGGGAGACTACAATAGCTGATTATTGTCATTGTATGTAAATTCAATAGAATCCTCTTACTTAAATCTTGAGTTCAACAACATCTGGGGTCGAGGCGCATGAATCTCTAACCTTTTGGATCGAGGGATATGCCTAAGCCAGTTTGAACTATGCTTAGGTTGGCAAGATCATTTTACTAGGTCGAGTGGTATTCAGTTATTTGTTGATAACAAAGCCCAATGGATTCATTTGGAACCTTTCTACCTCTTCACGTGAATGCTAATATGTTGATTTCGGTTTGAAGTCAGAATTTTTAGATATGATAATTGTGTTTTATCGTTTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCAAAAAGCACTTGTAAGTTTTGAATGTGGAAACATTATTTTTCTATCTGTTAAGAACTATAATTTTAATTTCTTATACTGCTTGCCACAGAAAGATGAAAAAAAGAGATTGGAATTAGCCAAAGAAGAGTTAACTTCATTGAAGTATCACCCTCTTAAGGATCATAAATCTATGAATAGCAGTAATAATGACACTCACATCAAGAGGAGGTCCAAGGATGCAATAAATGTAAGGTTCTTGCTTGTTGATTATGCTTCAATTTTTTTTTTATTGTGAATTTTGATAATTTCTTCGTGTTGCTGATGGTTTGGTTGCTATGAAATCTAACTTTCCCGTGAATTAATGAATTCTAATGTGTGCATGTGCACTGTGCTCTATTAGCATTTTTCTTCTTCAAACCATCATTATTGTTTTCTCATGATGTTACCGCTTCTCCCAGTTTTACTAAATAAACTCATTAGGATACTACATATTTCTTATGAAGGTATTTTCCTAGTCTGGCCATGGATTGATGCTCGCGTTCGTTGGTAGATTATCTGATGTCTTGAACTTAATGTCTTTTTTTAACTTTGACCTCCATAAATAACATTCACATAGAGGGTGGGGGTGGGTTGAAGGGAGGGGAGGTTTTCTTATTGTGAATGATTTGTAATTAGGTTGGAATCTTGGATTGATCTATATTTTATATTATATACTTGATTGATTAAGTTGTAGACACATATATACTTTACCTTTTTTTCCCACAAATAAATTGGAAGAGAAAATTAGCTTACTTTTTTATTACTTCACTGTGGAAATTGTGGCTTACCTCTTTTTTCATTAGATACATAATAATAACCAAATGTTGGCACATCAACTGGCTTGTTTTCCTGTGGTTATTTTATTTTCTGGTTAAAATTTCTTCAACCTTCATGACCACAGTATTGTTTATTCCTCAACTTTCACCAGCCCTACTTAGATAATATATTCTCCTTTCTTGCCTATATTGGTACAAATGGTACCCACCCCTTATATGTACTGAATATGTTGCATGTTTGCTTAAAATCCAAGTGAGAACTCAAACTGATATGATAAATATACTTGATTACCAAATTTTCTAGAGCAAGGTAAAACAGCTACGCAGTACATGATTGGGGGAGCATTGCCTGTTGAAGAATGAGCCTGTCCTCAACATATAGGCAGTGGAACTAATAAAAACAGTTATGAATTCCGGTTGAGATGAACGTAACCACCAAAGTGTTCTGCACTAGGTGCAAAGTAATGATAAGATCGAACTGTTATATCAAACATCATATGGAGTTTTACATTTTATTCAAATGGGGAATTTTATAAATCAGTTGGAAGATCATCAATAAGCGCTTCTTTGACCCAAGAAAATATATGTCAACTCCCAATTTGGCCTACAGATAAAGAAACTCATGGCAAATTAAATCCAAGTCAGGACAACAACACTAATTAACTGTTGCAGTTCCCACGTTCATCCAGGTACTCCCCTTCACTCTTCATTTCTCTCCTTTCCCTCTCTTTGGCAGATTATCTCGTCTATTGTGTTCAAATTGGTCATTTTCTCTTCACCATTGCAAGTTTTTTCCTTCCAGATCTGTTTGTATGTGTGTGTGTTTTCCAGATTCATAGCTCTAAATGCTCTACACTTTTTAGATCCGAGACCCTAACCTCCTCAGCTGCCTCAAGGAAAACTAAAAAAAAATCACTCTTCTCGCAAGAAAGAGCTTAGTTATGTCTAATGATCAAATGATCAAGAGGTTCGTGGTTCATATCTCCCACCCACACTTGTACTCAAATCAGCCTCTTGGTGCTATCTTTCTTATTCCCTCATCTACTGTAGCTTCCTTGCCGTTGGTTCTTGTGTTTTTTGTATTTGAGTTAAAATAACAAAGGAATAGCTTGGTAGGGGACAGCTAGTGCTTGAATCTTGGTGGGCGGGAGGCAACTGCTTAAGCTTTGTTCTATCCTTTCAATATTAGTCGATGATAGGACATACATGTTCAATCTGTATTTTTGCTGCATGAATTTCTTCATTCCTTCCTTGAGAAAATTTTCTCTGATATGTTTCTGTCTTTGTTTTCACTCCTTTTTTATTCTATTTTTGTCTTCGTTTGTTTGATTGGATCTGTTTTTTTCCCGATTTAGTTTCATAAGTTTCATTTGTATGAAAGAAAATCAGTTATGGGTTGCATGAATGTTTCATGTTGGAATATCATTATGAACTGAGGATGTATTTGGTGCATGTGCGAGAGTAGGCCAAGATTACAAATTCATATAAAATTATATTAAACTATAATTGATACTAGTATATCTGTTTGAACATGTGTGATCGCAAATAGACTAGGAAAGAATTCCTTCCTTCATTAGGATGAGTTGTCATTCGTGTTTGGAAAGAGGATTGGTCTAGAGACTCCACGGGATATGGCATCGAATGACAATGAGCACTTGGGGCAGATGCGCATGTGGAAGGATCTCAAGAACATTATATTTCAGTTCCCTCTGATGTTTGGCGCAACAGCCACTGTATACAAAGACTGTTGTAGGTCTGACTCCAATAGGGACTAAAATTGGTGAGGTAGTAAGAAGAAATGAACAACATATCACTCAAGATATGTTAAACGTGGTATGGATGATTACAATAAACATGCAAACAAGGCAACAGCTTGAGAGGATTGCATCTTGGTTTAAATCAAAGCATGCTATGGTGGAGTCCAGACAACGAAAGGAAGTGGTGGAGAGAGATTCCCTCAATTGTTAGAGTTGTTCCAACGGGTTAAGGTCAAACTAATGGATATCATATTCACGAATGTAGATGGAGCAAAAAAATTCCTTGCCTATTCCAATCAAGCTGAAAAGTACTTGTTGAATGCACTCTTGGGTAAAGGTGAATAAATAGCCTGTCTTGCAACAAAATCAATTTGCTTGGTTTGGAAAAGAACAAATTTTTTAAATCAACTCAATTTGATCCTTTTTTTTTTCATATTAAAACTGTGTTTACTTGTTTTTTTTCTTTTAAGTTTGAACCACAGACTTGTTGATTCTTAGCGTACACTAGTGTCAGTATTATTATTGCACGTTCTTTTATCTATATTTTCTTACCGATTAACATAGATGTGAAGTTATTGTGTTGTGTA

mRNA sequence

GAGGATAGTTATAGTATTGTGTTGGATGATGTTTGGAATTGGATTCTAATGCGTAGGGCTCTTTCACATTCTTCATTTCCAACTTTGCAAATCCCAAAATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCtcatcttctcttctccgattacccttcatcctcttcttcttttccatcttccgcttcctcctcAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGTCCTTCACTGAATTCTCTAATCTACGCACAGTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCAAAAAGCACTTAAAGATGAAAAAAAGAGATTGGAATTAGCCAAAGAAGAGTTAACTTCATTGAAGTATCACCCTCTTAAGGATCATAAATCTATGAATAGCAGTAATAATGACACTCACATCAAGAGGAGGTCCAAGGATGCAATAAATGTAAGGTAAAACAGCTACGCAGTACATGATTGGGGGAGCATTGCCTGTTGAAGAATGAGCCTGTCCTCAACATATAGGCAGTGGAACTAATAAAAACAGTTATGAATTCCGGTTGAGATGAACGTAACCACCAAAGTGTTCTGCACTAGGTGCAAAGTAATGATAAGATCGAACTGTTATATCAAACATCATATGGAGTTTTACATTTTATTCAAATGGGGAATTTTATAAATCAGTTGGAAGATCATCAATAAGCGCTTCTTTGACCCAAGAAAATATATGTCAACTCCCAATTTGGCCTACAGATAAAGAAACTCATGGCAAATTAAATCCAAGTCAGGACAACAACACTAATTAACTGTTGCAGTTCCCACGTTCATCCAGACTAGGAAAGAATTCCTTCCTTCATTAGGATGAGTTGTCATTCGTGTTTGGAAAGAGGATTGGTCTAGAGACTCCACGGGATATGGCATCGAATGACAATGAGCACTTGGGGCAGATGCGCATGTGGAAGGATCTCAAGAACATTATATTTCAGTTCCCTCTGATGTTTGGCGCAACAGCCACTGTATACAAAGACTGTTGTAGGTCTGACTCCAATAGGGACTAAAATTGGTGAGGTAGTAAGAAGAAATGAACAACATATCACTCAAGATATGTTAAACGTGGTATGGATGATTACAATAAACATGCAAACAAGGCAACAGCTTGAGAGGATTGCATCTTGGTTTAAATCAAAGCATGCTATGGTGGAGTCCAGACAACGAAAGGAAGTGGTGGAGAGAGATTCCCTCAATTGTTAGAGTTGTTCCAACGGGTTAAGGTCAAACTAATGGATATCATATTCACGAATGTAGATGGAGCAAAAAAATTCCTTGCCTATTCCAATCAAGCTGAAAAGTACTTGTTGAATGCACTCTTGGGTAAAGGTGAATAAATAGCCTGTCTTGCAACAAAATCAATTTGCTTGGTTTGGAAAAGAACAAATTTTTTAAATCAACTCAATTTGATCCTTTTTTTTTTCATATTAAAACTGTGTTTACTTGTTTTTTTTCTTTTAAGtttgaaccacagacttgttgattcttagcgtacactagtgtcagtATTATTATTGCACGTTCTTTTATCTATATTTTCTTACCGATTAACATAGATGTGAAGTTATTGTGTTGTGTA

Coding sequence (CDS)

ATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCTCATCTTCTCTTCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGTCCTTCACTGAATTCTCTAATCTACGCACAGTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCAAAAAGCACTTAAAGATGAAAAAAAGAGATTGGAATTAGCCAAAGAAGAGTTAACTTCATTGAAGTATCACCCTCTTAAGGATCATAAATCTATGAATAGCAGTAATAATGACACTCACATCAAGAGGAGGTCCAAGGATGCAATAAATGTAAGGTAA

Protein sequence

MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINVR*

Homology

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BLAST of Cucsa.022190.4 vs. Swiss-Prot
Match: SKI24_ARATH (F-box protein SKIP24 OS=Arabidopsis thaliana GN=SKIP24 PE=1 SV=2)

HSP 1 Score: 239.2 bits (609), Expect = 4.6e-62
Identity = 125/235 (53.19%), Postives = 174/235 (74.04%), Query Frame = 1


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  FPSSASS-SKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 121
             SS+ S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 181
            +S  +FS+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KLCKQQ
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQ 183

Query: 182 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIK-RRSKDAIN 235
           I    +AL++ K R ++A +EL S+KYHPL+D+KS+ + +  ++ K ++ K +IN
Sbjct: 184 IMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

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BLAST of Cucsa.022190.4 vs. TrEMBL
Match: A0A0A0L0S2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G416990 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 1.4e-126
Identity = 233/234 (99.57%), Postives = 233/234 (99.57%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAIN 235
           IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHK MNSSNNDTHIKRRSKDAIN
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKYMNSSNNDTHIKRRSKDAIN 234

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BLAST of Cucsa.022190.4 vs. TrEMBL
Match: A0A067KTZ6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02647 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.4e-70
Identity = 138/234 (58.97%), Postives = 176/234 (75.21%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSS-- 60
           MS LPDELW QIL+IG++    +YKDLCCVSI+  RL RLS  DSLWSHLL SD+P    
Sbjct: 1   MSSLPDELWRQILEIGIQNEKFSYKDLCCVSITCRRLHRLSSEDSLWSHLLSSDFPQPQN 60

Query: 61  --SSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEE 120
             S++   S+  +KS+Y+IR ER++ RK AAH RAVLRKES+I E  R++  +E RL EE
Sbjct: 61  PRSNNHSPSSRWAKSIYEIRFEREKERKVAAHRRAVLRKESEIMERERKMKGIETRLCEE 120

Query: 121 TGKWTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 180
           T K   + +E SNL  VR+A+VALNVWQPE +R RQKQIVEQC+VSV+ R ++L+MELKL
Sbjct: 121 TEKMRATASELSNLHKVRQASVALNVWQPETVRGRQKQIVEQCAVSVEYRFQSLEMELKL 180

Query: 181 CKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSK 231
           CKQQIA F KA +DE++RLE AKEEL S+KYHPL+D + M+  +N+ H K+R K
Sbjct: 181 CKQQIAAFNKAYRDEERRLETAKEELASMKYHPLRDCRPMSGGDNE-HNKKRKK 233

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BLAST of Cucsa.022190.4 vs. TrEMBL
Match: A0A0D2TZB0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113800 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.6e-69
Identity = 134/229 (58.52%), Postives = 176/229 (76.86%), Query Frame = 1


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSS 61
           +ELPDELW +IL+IG+K    T+KDLCCVSI S RL RLS+ D LWSHL+  D+P+ +SS
Sbjct: 5   NELPDELWRKILEIGIKASNFTFKDLCCVSICSRRLHRLSNEDLLWSHLISVDFPNQTSS 64

Query: 62  FPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWT 121
               +SS+KSLYKIR ER++ RK  AH RAVLRKESQ++EH R++ ++E RL EE  K  
Sbjct: 65  ----SSSAKSLYKIRFEREKERKLWAHKRAVLRKESQVSEHLRKLREIEVRLREERNKLN 124

Query: 122 TSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQI 181
           +S  E SNL  V +A+VALNVWQPEV+R RQKQ+VEQC V V+SR+  LDME+KLC QQ+
Sbjct: 125 SSLLELSNLHKVSQASVALNVWQPEVVRGRQKQMVEQCVVPVESRVHALDMEVKLCNQQL 184

Query: 182 AIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSK 231
            +F KA +DEK+RL+ AKEEL S+KYHPL+D+ +++S+ N  + K+R K
Sbjct: 185 QVFDKAYRDEKRRLDTAKEELKSMKYHPLRDY-TLSSTENQENRKKRKK 228

[Close]

BLAST of Cucsa.022190.4 vs. TrEMBL
Match: A0A0D2W511_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113800 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.6e-69
Identity = 134/229 (58.52%), Postives = 176/229 (76.86%), Query Frame = 1


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSS 61
           +ELPDELW +IL+IG+K    T+KDLCCVSI S RL RLS+ D LWSHL+  D+P+ +SS
Sbjct: 5   NELPDELWRKILEIGIKASNFTFKDLCCVSICSRRLHRLSNEDLLWSHLISVDFPNQTSS 64

Query: 62  FPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWT 121
               +SS+KSLYKIR ER++ RK  AH RAVLRKESQ++EH R++ ++E RL EE  K  
Sbjct: 65  ----SSSAKSLYKIRFEREKERKLWAHKRAVLRKESQVSEHLRKLREIEVRLREERNKLN 124

Query: 122 TSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQI 181
           +S  E SNL  V +A+VALNVWQPEV+R RQKQ+VEQC V V+SR+  LDME+KLC QQ+
Sbjct: 125 SSLLELSNLHKVSQASVALNVWQPEVVRGRQKQMVEQCVVPVESRVHALDMEVKLCNQQL 184

Query: 182 AIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSK 231
            +F KA +DEK+RL+ AKEEL S+KYHPL+D+ +++S+ N  + K+R K
Sbjct: 185 QVFDKAYRDEKRRLDTAKEELKSMKYHPLRDY-TLSSTENQENRKKRKK 228

[Close]

BLAST of Cucsa.022190.4 vs. TrEMBL
Match: A0A0B2RQP6_GLYSO (F-box protein SKIP24 OS=Glycine soja GN=glysoja_011176 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.8e-68
Identity = 134/233 (57.51%), Postives = 173/233 (74.25%), Query Frame = 1


Query: 4   LPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS--S 63
           LPDELW +IL+IG+++   +YKDLCCVSIS  RL RLS  + LW+ LLFSDYP S S  S
Sbjct: 6   LPDELWRRILEIGIESNGFSYKDLCCVSISCRRLHRLSSEEPLWNRLLFSDYPQSQSHPS 65

Query: 64  FPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWT 123
             SS+SSSKSLY++R ERD+ R+ AAH RAVLRKESQ+AEH RR+  ++ RL +ET K T
Sbjct: 66  SSSSSSSSKSLYRLRFERDKERRIAAHRRAVLRKESQVAEHSRRLKDMKTRLAQETTKAT 125

Query: 124 TSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQI 183
            +  + SNLR +R+A VALNVWQPEV+R RQKQ+VEQ  V  + R+  L+ME KLCKQQI
Sbjct: 126 QTAQDLSNLRRLRQAFVALNVWQPEVVRGRQKQMVEQSVVPAECRIHALEMEFKLCKQQI 185

Query: 184 AIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAIN 235
              +K+ KDEK+RL+ AKEEL S+KYHP+++HK  +   N+ H+KR+     N
Sbjct: 186 LGLEKSYKDEKRRLDTAKEELASMKYHPVQEHKPTSGGENE-HVKRKKLKICN 237

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BLAST of Cucsa.022190.4 vs. TAIR10
Match: AT1G08710.2 (AT1G08710.2 F-box family protein)

HSP 1 Score: 239.2 bits (609), Expect = 2.6e-63
Identity = 125/235 (53.19%), Postives = 174/235 (74.04%), Query Frame = 1


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  FPSSASS-SKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 121
             SS+ S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 181
            +S  +FS+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KLCKQQ
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQ 183

Query: 182 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIK-RRSKDAIN 235
           I    +AL++ K R ++A +EL S+KYHPL+D+KS+ + +  ++ K ++ K +IN
Sbjct: 184 IMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

[Close]

BLAST of Cucsa.022190.4 vs. NCBI nr
Match: gi|449453117|ref|XP_004144305.1| (PREDICTED: F-box protein SKIP24 [Cucumis sativus])

HSP 1 Score: 460.3 bits (1183), Expect = 2.0e-126
Identity = 233/234 (99.57%), Postives = 233/234 (99.57%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAIN 235
           IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHK MNSSNNDTHIKRRSKDAIN
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKYMNSSNNDTHIKRRSKDAIN 234

[Close]

BLAST of Cucsa.022190.4 vs. NCBI nr
Match: gi|659111518|ref|XP_008455770.1| (PREDICTED: F-box protein SKIP24 [Cucumis melo])

HSP 1 Score: 431.8 bits (1109), Expect = 7.8e-118
Identity = 224/239 (93.72%), Postives = 227/239 (94.98%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTSFTEFSNLRTV-----REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180
           TT+ TE SNLRTV     REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAIN 235
           LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNND+HIKRRSKDAIN
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAIN 239

[Close]

BLAST of Cucsa.022190.4 vs. NCBI nr
Match: gi|694443345|ref|XP_009348272.1| (PREDICTED: F-box protein SKIP24 [Pyrus x bretschneideri])

HSP 1 Score: 276.6 bits (706), Expect = 4.2e-71
Identity = 141/229 (61.57%), Postives = 178/229 (77.73%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MS LPDELW +IL+IGV+  + +YKDLC +SISS RLRRLSD DSLWSHLL SD P+SSS
Sbjct: 1   MSALPDELWRRILEIGVQGGSFSYKDLCRISISSARLRRLSDEDSLWSHLLSSDLPTSSS 60

Query: 61  SFPS-SASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGK 120
           S  S + S+SKSLYKIR ER+R +K AAH RAVLRKESQ+ E   ++ ++E RL EET K
Sbjct: 61  SITSPNPSTSKSLYKIRFERERDKKMAAHRRAVLRKESQVVERSMKLREMEARLAEETQK 120

Query: 121 WTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQ 180
              + TE SNL  +R+A+VALNVWQPE+IR RQKQIVEQC V V+SR  +L+MELKLCKQ
Sbjct: 121 MQAALTELSNLSRIRQASVALNVWQPEIIRGRQKQIVEQCVVPVESRFHSLEMELKLCKQ 180

Query: 181 QIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRR 229
            I   +KA KDEK+RL L +EEL S++YHPL++H+ +N  + + +IKR+
Sbjct: 181 HILGLEKAHKDEKRRLALVEEELQSMRYHPLRNHEQINCRDIEYNIKRK 229

[Close]

BLAST of Cucsa.022190.4 vs. NCBI nr
Match: gi|657989410|ref|XP_008386906.1| (PREDICTED: F-box protein SKIP24 isoform X2 [Malus domestica])

HSP 1 Score: 272.7 bits (696), Expect = 6.0e-70
Identity = 138/229 (60.26%), Postives = 178/229 (77.73%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MS LPDELW +IL+IGV++ + +YKDLC +SISS RLRRLSD DSLWSHLL SD P+SSS
Sbjct: 1   MSALPDELWRRILEIGVQSGSFSYKDLCRISISSARLRRLSDEDSLWSHLLSSDLPTSSS 60

Query: 61  SFPS-SASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGK 120
           S  S + S+SKSLYKIR ER+R +K AAH RAVLRKESQ+ E   ++ ++E RL EET K
Sbjct: 61  SITSPNPSTSKSLYKIRFERERDKKMAAHRRAVLRKESQVVERSMKLREMEARLAEETQK 120

Query: 121 WTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQ 180
              + TE S L  +R+A+VALNVWQPE++R RQKQIVEQC V V+SR  +L+MELKLCKQ
Sbjct: 121 MQATLTELSXLSRIRQASVALNVWQPEIVRGRQKQIVEQCVVPVESRFHSLEMELKLCKQ 180

Query: 181 QIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRR 229
            I   +KA KDEK+RL L +EEL S++YHPL++H+ ++  + + +IKR+
Sbjct: 181 HILGLEKAHKDEKRRLALVEEELQSMRYHPLRNHEXIDCGDIEYNIKRK 229

[Close]

BLAST of Cucsa.022190.4 vs. NCBI nr
Match: gi|802585304|ref|XP_012070353.1| (PREDICTED: F-box protein SKIP24 [Jatropha curcas])

HSP 1 Score: 271.6 bits (693), Expect = 1.3e-69
Identity = 138/234 (58.97%), Postives = 176/234 (75.21%), Query Frame = 1


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSS-- 60
           MS LPDELW QIL+IG++    +YKDLCCVSI+  RL RLS  DSLWSHLL SD+P    
Sbjct: 1   MSSLPDELWRQILEIGIQNEKFSYKDLCCVSITCRRLHRLSSEDSLWSHLLSSDFPQPQN 60

Query: 61  --SSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEE 120
             S++   S+  +KS+Y+IR ER++ RK AAH RAVLRKES+I E  R++  +E RL EE
Sbjct: 61  PRSNNHSPSSRWAKSIYEIRFEREKERKVAAHRRAVLRKESEIMERERKMKGIETRLCEE 120

Query: 121 TGKWTTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKL 180
           T K   + +E SNL  VR+A+VALNVWQPE +R RQKQIVEQC+VSV+ R ++L+MELKL
Sbjct: 121 TEKMRATASELSNLHKVRQASVALNVWQPETVRGRQKQIVEQCAVSVEYRFQSLEMELKL 180

Query: 181 CKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSK 231
           CKQQIA F KA +DE++RLE AKEEL S+KYHPL+D + M+  +N+ H K+R K
Sbjct: 181 CKQQIAAFNKAYRDEERRLETAKEELASMKYHPLRDCRPMSGGDNE-HNKKRKK 233

The following BLAST results are available for this feature:

BLAST of Cucsa.022190.4 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKI24_ARATH	4.6e-62	53.19	F-box protein SKIP24 OS=Arabidopsis thaliana GN=SKIP24 PE=1 SV=2	[more]

BLAST of Cucsa.022190.4 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0S2_CUCSA	1.4e-126	99.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G416990 PE=4 SV=1	[more]
A0A067KTZ6_JATCU	9.4e-70	58.97	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02647 PE=4 SV=1	[more]
A0A0D2TZB0_GOSRA	3.6e-69	58.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113800 PE=4 SV=1	[more]
A0A0D2W511_GOSRA	3.6e-69	58.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113800 PE=4 SV=1	[more]
A0A0B2RQP6_GLYSO	1.8e-68	57.51	F-box protein SKIP24 OS=Glycine soja GN=glysoja_011176 PE=4 SV=1	[more]

BLAST of Cucsa.022190.4 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08710.2	2.6e-63	53.19	F-box family protein	[more]

BLAST of Cucsa.022190.4 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453117\|ref\|XP_004144305.1\|	2.0e-126	99.57	PREDICTED: F-box protein SKIP24 [Cucumis sativus]	[more]
gi\|659111518\|ref\|XP_008455770.1\|	7.8e-118	93.72	PREDICTED: F-box protein SKIP24 [Cucumis melo]	[more]
gi\|694443345\|ref\|XP_009348272.1\|	4.2e-71	61.57	PREDICTED: F-box protein SKIP24 [Pyrus x bretschneideri]	[more]
gi\|657989410\|ref\|XP_008386906.1\|	6.0e-70	60.26	PREDICTED: F-box protein SKIP24 isoform X2 [Malus domestica]	[more]
gi\|802585304\|ref\|XP_012070353.1\|	1.3e-69	58.97	PREDICTED: F-box protein SKIP24 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.022190	Cucsa.022190	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.022190.4	Cucsa.022190.4-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.022190.4.three_prime_UTR.2	Cucsa.022190.4.three_prime_UTR.2	three_prime_UTR
Cucsa.022190.4.three_prime_UTR.1	Cucsa.022190.4.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.022190.4.CDS.5	Cucsa.022190.4.CDS.5	CDS
Cucsa.022190.4.CDS.4	Cucsa.022190.4.CDS.4	CDS
Cucsa.022190.4.CDS.3	Cucsa.022190.4.CDS.3	CDS
Cucsa.022190.4.CDS.2	Cucsa.022190.4.CDS.2	CDS
Cucsa.022190.4.CDS.1	Cucsa.022190.4.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.022190.4.five_prime_UTR.1	Cucsa.022190.4.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 1..76 score: 6.54
None	No IPR available	unknown	Coil	Coil	coord: 92..112 score: -coord: 181..208 scor
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 2..92 score: 2.
None	No IPR available	PANTHER	PTHR15537	FAMILY NOT NAMED	coord: 1..228 score: 4.3E
None	No IPR available	PANTHER	PTHR15537:SF5	F-BOX PROTEIN SKIP24	coord: 1..228 score: 4.3E