Cucsa.018420 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.018420
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	MADS-box transcription factor
Location	scaffold00252 : 812844 .. 817025 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGGTATATCTCTTAAGAGTTGACATCAATGATCTTTTCTCCATCTCTAAATTTGTTAATTATCTCTTCAATATAGCTCAACTAATTCAATTATTATTATAATATCAACCAAAATGTGAAAAAAAATTTGTTAAAGATTCAAATCTATACCGAAATTTACATAATTAGGTATAACATAATAAACCCTTGGAAACATAATGAATAAGATAAAAACAAGGTTAAGAAATCATTTTACTTGAGTGGTTTGTTTAATTTTAATCCCCATATTTTTAAATATATATCCAATTTTAGTCTATCAATTTTCCAGTCCATTTTAAATTAATTAATTCTTATACTAGTTTTTGGTTGACTATATATTCCAAAAAAAAACACCTATCATCTGCTAACATTAATTTTTCCCATATTATATTTGATTACGTAAAATTTATTATTATTTATTAAATTTCATGGTCTAAATTAAGATTTATCCAAATTATTTAAACTAAAGTTAAGATTTCAAAGTATAAGAACTAAAATCTGTGGTATATTTAAGCACGTAGGCAAATTAAATTTAGATCGATAATAAATTTGAAAGGAAGGATTATATATACATATTTACACACTTGTTTACTTATTTGATGTGGAGGAAAAGTAAATAAAAAAGTGAGAGAGAATAATGGATGAAACCCAATGGTTAATAAGAAGCAACAAAAAAAAAAAACTTAAAACTTAATTAATTCGAAAAAAAAAAAGCTTATATATATAATAATAATTAATGTGAAAAAAAATTGGAGTTGAGTTGGGGTTGTCACAAACCCAAAAAAAAGGCCTATTTTTGTGTAAGAAATAGAAAGTTTATGAACATGAAAACCCAATATAGAATGGTCCTTTTATTTTAAAGAACCCATGTTTGTTGAATTTTTAATTAGAGCATTTGAAAAGAAGAAAAGAGAGAAAGAAAATGGGAAGAGGGAAAATAGAAATAAAAAGAATAGAGAACTCAAGCAATAGACAAGTTACATATTCAAAGAGAAGAAATGGTATCATCAAAAAAGCCAAAGAAATTACTGTTCTTTGCGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAATATTGCAGCCCTTCTACACCGTAAGAAATTTTATTTTTCTCTCTTTTTTCTTATATAATTTTTTAAAATTTTGTTATTAATTAATCTGATTTCTTATCTTTTTTTTCTTTTTCTTTTTGGGAATGATAATTTTAGTTTGGTTGATATCTTGGATAAGTATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAGCATGAGGTTTTATTTATTTATTTTTGTTTATATTTTCTCTCGAATTTTCTCCCTCGTATGAAATTTTAGATCTAAGTTTCTTCTTCTTCTTCTTTGGATATGTGAGAAATGAAACCCTAAAAGAAAGTATATATATATATATATATATAACATGATAGTATTTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAGTATAGTGTGTATATATATATATATATATATATATATATATATATATTCATGAAAAGAGAATAATGAGAAAATGAGAAAATAAAAACAGGCATTTGAGAGGAGAAGATATAACGTCTTTGAACTACAAGGAGTTAATGGCTCTCGAAGAAGCTCTTGAAAATGGCCTCACCGGTGTTCGTGAGAAGCAGGTTTTTCCTTTTTCCTTTTTCCTTTTTCTAAAATAATTATATGCAAAACTTCATCTATCAATAGTAACACAATTCTATTTGTGATATTCATACACACCACAAAAATCTACCGGTAATATAATATCTTTCATCAATAAAATCTGAAATTTTATTGTATTTTATAAATATATTTTGGAAGTAGGCGTGATTTACGTAATAATTTAACTCGATATATATATATATATATGTATATGATAAGATGAATATTAATTAAATTTTTGTTTGGTTTTGTGGTTGCAGTCGGAATTCATGAAAATGATGAGAACAAATGTACGTATATATATCTTTACTCTCTTTTTTTTCTCCATTCATCACATTGTATTTTCTTTTATCGCTTAGTTAATTCAAAGAGAATGTTAGAAAGAAAAAAAAAGAGTAAGTTTTATTACCTAATAGAGTTTTTTAATTGGAATACCGTTGAACCTCTATCAGTATCTCATACACGACGTTTTGGTTATAAATTATTAGAATATAATTTTTTTTCTATATTTTTAGTTTTGTCATTTATCATTTTTTCTAAAAAGAAAAACTGGTTTCTTTCTTTTTTTTTTTTACTAGAATTTGTAATTATCTAAGAAAAGAAAAGAAAATTGTGGTTTAAAGTGGCTCTAAAATCTGTTTACTTTTTTTTAAAAAAAAGAAATTAGTTTAGATTGTTTTTAAAAATTTGCCAAAGATTTTAAAAGTATTATTGTGAGTACTTTGATCGTGAGAAAAATATCTAATGCATTGAAAGATTGTTTATTTTCGTTTTTTGATTTTCTGTTTCTGTTTTTCTAGAATCGTTTCTATAAATTTTGAAAATTACAGAATCTCTCTGTTTGTTTTTTTCTATCATAAACATTAATATAACTTAATTGTATCATTCATTATCAAAAATAATTTTTTATTTAAAATATGTATTTTTTAAAAAAGAAAATTCAACAAAGTAAGAAAGAATTAAAAAGATTAGTTTTTAGATGAATTAGTTGTGTTGGGCAATTAAATTAAACATTGTGTTTAGAATATACTAATGATATTGTAGTGAAATAAATAATGTTGTTGAGTTTTGGATATTTAATAATATAGGAAAGAATGATGGAAGAAGAGAACAAGCGCCTTAACTATGAGCTGGTAAAATCATTTTACACTCTTTCTTCATAATTCAACTTTTAGTTGTACATATAATATTTAACTATAACCAATAACAAGTCCACCTATTTACAATTATATAATAAATTTTTTTTATCTATAGGATAAATATTTATTATTTAACATAAAGTAGACATTTTTTTTTTTGAAGTATAATACTTTTCAAGATTTTCAAAAATATAATTAAAACATACTAAACAACAACTTATGAATATTTAAATTTAGTTTAAAGTATTATTTTGGTTATAAAAATATCTAAATTTTGTTAGAAGTTTTTTTAGGGAAGGCAACTTTTAATTTTAGCTCAAAGGTAAAATATAAGGTTTAAAATGTATCATTTTGCATTGAAACTTTGAACATCTTATTACTAATTATTTATTTTATCTCATTTTTCATTCCATTAAAAAAGTTTGCACCATGTTTGCATTTCATTTAACTTTTTAATACGTATTAGTCATAAAACAGATTTTTTAGTACAATAGGAAAAGAGAAATTTAAACACGTACCTCTTTGTTAACATATTTAGAAGTCGATTTAGTTATGTTTGTTTTAAGTAAAACGTTTAAGTATTTAAATCAATTATATATACATTACATGCAGTACCAAAAGGAGATGGTTGCAATGGGAGATAGTGTGAGAGAAATGGATATTGGATATAATCAAAGAATGAGAGATTTCAATTCTCAAATGCCTTTTGCTTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGGAATAATTAATCATATTTTATATCTATTTCTCTCTTTATGTTTATGCTATTGGGAGTCTTAAAACTTTTTTTAATATAATCTCTAGACTTTTAAATTATGTGTACAAACTTTGGGTTATGTGTGTTATGTTATTATGTACTGTTATGATGAGAACTTCAATCACTGTTAAGCTAATGTTATGTAGTTTTAATATATACTATATTTTGTGTGATGTGA

mRNA sequence

ATGGCTAGagggaaaatagaaataaaaagaatagagaaCTCAAGCAATAGACAAGTTACATATTCAAAGAGAAGAAATGGTATCATCAAAAAAGCCAAAGAAATTACTGTTCTTTGCGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAATATTGCAGCCCTTCTACACCGCATTTGAGAGGAGAAGATATAACGTCTTTGAACTACAAGGAGTTAATGGCTCTCGAAGAAGCTCTTGAAAATGGCCTCACCGGTGTTCGTGAGAAGCAGTCGGAATTCATGAAAATGATGAGAACAAATTACCAAAAGGAGATGGTTGCAATGGGAGATAGTGTGAGAGAAATGGATATTGGATATAATCAAAGAATGAGAGATTTCAATTCTCAAATGCCTTTTGCTTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGGAATAATTAATCATATTTTATATCTATTTCTCTCTTTATGTTTATGCTATTGGGAGTCTTAAAACTTTTTTTAATATAATCTCTAGACTTTTAAATTATGTGTACAAACTTTGGGTTATGTGTGTTATGTTATTATGTACTGTTATGATGAGAACTTCAATCACTGTTAAGCTAATGTTATGTAGTTTTAATATATACTATATTTTGTGTGATGTGA

Coding sequence (CDS)

ATGGCTAGAGGGAAAATAGAAATAAAAAGAATAGAGAACTCAAGCAATAGACAAGTTACATATTCAAAGAGAAGAAATGGTATCATCAAAAAAGCCAAAGAAATTACTGTTCTTTGCGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAATATTGCAGCCCTTCTACACCGCATTTGAGAGGAGAAGATATAACGTCTTTGAACTACAAGGAGTTAATGGCTCTCGAAGAAGCTCTTGAAAATGGCCTCACCGGTGTTCGTGAGAAGCAGTCGGAATTCATGAAAATGATGAGAACAAATTACCAAAAGGAGATGGTTGCAATGGGAGATAGTGTGAGAGAAATGGATATTGGATATAATCAAAGAATGAGAGATTTCAATTCTCAAATGCCTTTTGCTTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGGAATAA

Protein sequence

MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNYQKEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRVQPIQPNLQERE*

Homology

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BLAST of Cucsa.018420 vs. Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.9e-32
Identity = 96/211 (45.50%), Postives = 116/211 (54.98%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDA+VSL+IF +SGKMHEYCSP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSP 60

Query: 61  ST---PHLRGEDITSLN----------YKELMALEEALENGLTGVREKQSEFMKMMRTNE 120
           ST     L G   TS              E+  +++  +N    +R  + E +  +   E
Sbjct: 61  STTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKE 120

Query: 121 RMMEEE---NKRLNYELYQKE---MVAMGDSVRE------------------------MD 168
            M+ EE   N   +    Q E   MV   D + E                        ++
Sbjct: 121 LMVLEEGLTNGLSSISAKQSEILRMVRKNDQILEEEHKQLQYALHQKEMAAMGGNMRMIE 180

[Close]

BLAST of Cucsa.018420 vs. Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.1e-31
Identity = 95/214 (44.39%), Postives = 117/214 (54.67%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENSSNRQVTYSKRRNGI+KKAKEI+VLCDA VS++IFASSGKMHE+CSP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query: 61  STPHLRGED-ITSLNYKELM-ALEEALENGLTGVREK-----------QSEFMKMMRTNE 120
           ST  +   D    L+ K L     E L+N +  V+++           + E +  +   E
Sbjct: 61  STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query: 121 RMMEE---ENKRLNYELYQKEMVAMGDSVREMDIGYNQRMR------------------- 168
            M+ E   EN     +  Q E V M     EM    NQ ++                   
Sbjct: 121 LMVLEDALENGTSALKNKQMEFVRMMRKHNEMVEEENQSLQFKLRQMHLDPMNDNVMESQ 180

[Close]

BLAST of Cucsa.018420 vs. Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.4e-30
Identity = 83/209 (39.71%), Postives = 120/209 (57.42%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKE-------------------ITVLCDA 60
           M RGKIEIKRIENS+NRQVT+SKRR+GI+KKA+E                   +   C  
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSP 60

Query: 61  QVSLVIF-----ASSGKM-----HEYCSPSTP--------------HLRGEDITSLNYKE 120
           + SL         +SGK+     H+  S                  HL+GED+ SL  KE
Sbjct: 61  KTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKE 120

Query: 121 LMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMD 167
           L+ +EEAL+NG+  V +K  +  +     ++M+E+ENK L ++L+Q++ +A+  S+R+++
Sbjct: 121 LIMIEEALDNGIVNVNDKLMDHWERHVRTDKMLEDENKLLAFKLHQQD-IALSGSMRDLE 180

[Close]

BLAST of Cucsa.018420 vs. Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.7e-29
Identity = 89/209 (42.58%), Postives = 113/209 (54.07%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENSSNRQVTYSKRRNGI+KKAKEI+VLCDA+VS++IFASSGKMHE+ S 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST 60

Query: 61  STPHLRGEDITSLNYKELMALEEALENGLTGV-----------REKQSEFMKMMRTNERM 120
           S   +  +       + L A  E L+N +  V           R  + E +  +   E M
Sbjct: 61  SLVDILDQYHKLTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELM 120

Query: 121 MEE---ENKRLNYELYQKEMVAM----GDSVREMDIGYNQRMR----------------- 168
           + E   EN   +    Q E++ M      S+ E     N ++R                 
Sbjct: 121 ILEDALENGLTSIRNKQNEVLRMMRKKTQSMEEEQDQLNCQLRQLEIATMNRNMGEIGEV 180

[Close]

BLAST of Cucsa.018420 vs. Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.3e-29
Identity = 88/208 (42.31%), Postives = 112/208 (53.85%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENSSNRQVTYSKRRNGI+KKAKEI+VLCDA+VS++IFASSGKMHE+ S 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST 60

Query: 61  STPHLRGEDITSLNYKELMALEEALENGLTGV-----------REKQSEFMKMMRTNERM 120
           S   +  +       +   A  E L+N +  V           R  + E +  +   E M
Sbjct: 61  SLVDILDQYHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELM 120

Query: 121 MEE---ENKRLNYELYQKEMVAM----GDSVREMDIGYN--------------------- 168
           M E   +N   +    Q +++ M      S+ E     N                     
Sbjct: 121 MLEDALDNGLTSIRNKQNDLLRMMRKKTQSMEEEQDQLNWQLRQLEIASMNRNMGEIGEV 180

[Close]

BLAST of Cucsa.018420 vs. TrEMBL
Match: Q6GWU9_9MAGN (PISTILLATA-like protein OS=Akebia trifoliata GN=PI-1 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.8e-52
Identity = 117/212 (55.19%), Postives = 141/212 (66.51%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENS+NRQVTYSKRRNGI+KKAKEIT+LCDAQVSLVIF+S+GKM +YCSP
Sbjct: 1   MGRGKIEIKRIENSTNRQVTYSKRRNGIMKKAKEITILCDAQVSLVIFSSTGKMSDYCSP 60

Query: 61  STP-------------------------------------------HLRGEDITSLNYKE 120
           ST                                            HL+GEDITSLN KE
Sbjct: 61  STTLTKVLDRYQKTSGKRLWDAKHEYLSTEVDRIKKENDCMQIELRHLKGEDITSLNPKE 120

Query: 121 LMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMD 169
           L+ +EEALENGL  VR KQ E++KM++ NER +EEENK L   L+ +++   G+   EM+
Sbjct: 121 LIPIEEALENGLVNVRAKQMEYLKMLKKNERYLEEENKHLRCILHHQQIEIEGNMRMEME 180

[Close]

BLAST of Cucsa.018420 vs. TrEMBL
Match: Q9ZTQ9_CUCSA (MADS box protein 26 OS=Cucumis sativus GN=CUM26 PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.8e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 64  HLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQ 123
           HLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQ
Sbjct: 107 HLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQ 166

Query: 124 KEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRVQPIQPNLQERE 169
           KEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRVQPIQPNLQERE
Sbjct: 167 KEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRVQPIQPNLQERE 211

[Close]

BLAST of Cucsa.018420 vs. TrEMBL
Match: Q9ZTQ9_CUCSA (MADS box protein 26 OS=Cucumis sativus GN=CUM26 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-38
Identity = 111/221 (50.23%), Postives = 126/221 (57.01%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60

Query: 61  STPHLRGEDITSLNYKE-----LMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENK 120
           STP +   DI    +K+       A  E L N +  V+++       +R    +  E+  
Sbjct: 61  STPLV---DILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELR---HLRGEDIT 120

Query: 121 RLNYELYQKEMVAMGDS-------VREMDI------------------------------ 169
            LNY    KE++A+ ++       VRE                                 
Sbjct: 121 SLNY----KELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMV 180

HSP 2 Score: 210.3 bits (534), Expect = 1.8e-51
Identity = 111/209 (53.11%), Postives = 143/209 (68.42%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENS+NRQVT+SKRRNGIIKKA+EI+VLC+AQVS+VIF+SSGKM EYCSP
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRNGIIKKAREISVLCEAQVSVVIFSSSGKMSEYCSP 60

Query: 61  STP-------------------------------------------HLRGEDITSLNYKE 120
           ST                                            HL+GED+ SL  KE
Sbjct: 61  STSLPKILERCQVNCGKKIWDPKHEHLSAEIDRIKKENDNMQIQLRHLKGEDLNSLQPKE 120

Query: 121 LMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMD 167
           L+ +EEALENG+ GVREKQ++F++M++ NER++EE+NKRL Y L+ +++ AM +++R ++
Sbjct: 121 LIPIEEALENGIRGVREKQNDFLRMLKKNERILEEDNKRLTYILHHQQL-AMDENMRNLE 180

[Close]

BLAST of Cucsa.018420 vs. TrEMBL
Match: A5YBR9_TROAR (MADS-box transcription factor PI-like 2 OS=Trochodendron aralioides GN=PI2 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-49
Identity = 115/212 (54.25%), Postives = 141/212 (66.51%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENSSNRQVTYSKR+NGI+KKA+EITVLCDAQVSLVI ASSGKMH YCSP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAREITVLCDAQVSLVILASSGKMHYYCSP 60

Query: 61  STP-------------------------------------------HLRGEDITSLN-YK 120
           ST                                            HL+GEDI +++ +K
Sbjct: 61  STTLTEILDRYHKNAGEKLWDAKHEYLSNEVERIKKENDRMQIELRHLKGEDIFNMHSHK 120

Query: 121 ELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREM 169
           EL+++EEALENGL  VR K  E+++  R NER +EEENK+L Y L+Q++M AM  SVREM
Sbjct: 121 ELISIEEALENGLANVRYKTMEYVEKRRKNERKLEEENKQLTYYLHQQQM-AMDGSVREM 180

[Close]

BLAST of Cucsa.018420 vs. TrEMBL
Match: A3QQT2_PERAE (PI.2 OS=Persea americana PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.5e-49
Identity = 111/210 (52.86%), Postives = 139/210 (66.19%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENS+NRQVTYSKRRNG++KKAKEITVLCDA VSLVIF+++GKM EYCS 
Sbjct: 1   MGRGKIEIKRIENSTNRQVTYSKRRNGLLKKAKEITVLCDADVSLVIFSATGKMSEYCSS 60

Query: 61  STP-------------------------------------------HLRGEDITSLNYKE 120
           S                                             HL+GED+TSL+ KE
Sbjct: 61  SATMIKMLDRYQKASGNRLWDAKHEYLSMEVDRIKKENDSMQIELRHLKGEDLTSLHPKE 120

Query: 121 LMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMD 168
           L+ +EEALENGLTGVR+KQ E + +++ NER++EEEN RL Y L+   + A+  +VR+++
Sbjct: 121 LIHIEEALENGLTGVRDKQEELLSILKKNERILEEENMRLMYMLHHHHL-AIDGNVRDVE 180

[Close]

BLAST of Cucsa.018420 vs. TAIR10
Match: AT5G20240.1 (AT5G20240.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-25
Identity = 81/206 (39.32%), Postives = 114/206 (55.34%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIEN++NR VT+SKRRNG++KKAKEITVLCDA+V+L+IFAS+GKM +YC P
Sbjct: 1   MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query: 61  STP-HLRGEDITSLNYKELM-ALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLN 120
           S       +    L+ K+L  A  E L N +  ++++       +R    +  E+ + LN
Sbjct: 61  SMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELR---HLKGEDIQSLN 120

Query: 121 YE--LYQKEMVAMG-DSVR--EMDIGYNQR------------------------------ 168
            +  +  +  +  G D VR  +M+I  ++R                              
Sbjct: 121 LKNLMAVEHAIEHGLDKVRDHQMEILISKRRNEKMMAEEQRQLTFQLQQQEMAIASNARG 180

[Close]

BLAST of Cucsa.018420 vs. TAIR10
Match: AT3G54340.1 (AT3G54340.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 111.3 bits (277), Expect = 5.8e-25
Identity = 64/157 (40.76%), Postives = 99/157 (63.06%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           MARGKI+IKRIEN +NRQVTYSKRRNG+ KKA E+TVLCDA+VS+++F+SS K+HEY SP
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISP 60

Query: 61  STPHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYE 120
           +T             KE++ L + + +    V    +++ +M  T  +++ E N+ L  +
Sbjct: 61  NT-----------TTKEIVDLYQTISD----VDVWATQYERMQETKRKLL-ETNRNLRTQ 120

Query: 121 LYQKEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRV 158
           + Q+    +G+ + E+DI   Q +R    +M   F++
Sbjct: 121 IKQR----LGECLDELDI---QELRRLEDEMENTFKL 134

[Close]

BLAST of Cucsa.018420 vs. TAIR10
Match: AT2G03710.1 (AT2G03710.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-20
Identity = 49/142 (34.51%), Postives = 84/142 (59.15%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGK+E+KRIEN  NRQVT++KRRNG++KKA E++VLCDA+++L+IF++ GK++E+CS 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  STPHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYE 120
            +   R  D     Y++              +++K  +++K+    E +   +   L  E
Sbjct: 61  PSGMARTVD----KYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEE 120

Query: 121 LYQKEMVAMGDSVREMDIGYNQ 143
           L + ++  +    R++D    Q
Sbjct: 121 LSEMDVNELEHLERQVDASLRQ 138

[Close]

BLAST of Cucsa.018420 vs. TAIR10
Match: AT1G24260.2 (AT1G24260.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 94.4 bits (233), Expect = 7.4e-20
Identity = 53/145 (36.55%), Postives = 84/145 (57.93%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RG++E+KRIEN  NRQVT++KRRNG++KKA E++VLCDA+V+L+IF++ GK++E+CS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  STPHLRGEDITSLNY---KELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRL 120
           S+     E     NY   +  +   EAL   L+     Q E++K+    + +   +   L
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAVELS----SQQEYLKLKERYDALQRTQRNLL 120

Query: 121 NYELYQKEMVAMGDSVREMDIGYNQ 143
             +L       +    R++D    Q
Sbjct: 121 GEDLGPLSTKELESLERQLDSSLKQ 141

HSP 2 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 55/215 (25.58%), Postives = 94/215 (43.72%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKK----------------------------- 60
           M RG++E+KRIEN  NRQVT++KRRNG++KK                             
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  -----AKEITVLCD---------AQVSLVIFASSGK-------MHEYCSPSTPHLRGEDI 120
                  E    C+         ++ +L +  SS +        ++    +  +L GED+
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 121 TSLNYKELMALEEALENGLTGVREKQSEFM----KMMRTNERMMEEENKRLNYELYQKEM 162
             L+ KEL +LE  L++ L  +R  +++FM      +++ ERM+ E NK L   L     
Sbjct: 121 GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQ 180

[Close]

BLAST of Cucsa.018420 vs. TAIR10
Match: AT3G02310.1 (AT3G02310.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-19
Identity = 51/149 (34.23%), Postives = 86/149 (57.72%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RG++E+KRIEN  NRQVT++KRRNG++KKA E++VLCDA+VSL++F++ GK++E+CS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query: 61  STPHLRGEDITSLNYKELMALE---EALENGLTGVREKQSEFMKMMRTNERMMEEENKRL 120
           S      E     +Y  +       + LEN      + +  +  + R    ++ E+   L
Sbjct: 61  SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 NYELYQKEMVAMGDSVREMDIGYNQRMRD 147
           N +  ++    +  S++++     Q M D
Sbjct: 121 NSKELEQLERQLDGSLKQVRCIKTQYMLD 149

HSP 2 Score: 32.3 bits (72), Expect = 3.4e-01
Identity = 20/62 (32.26%), Postives = 35/62 (56.45%), Query Frame = 1


Query: 64  HLRGEDITSLNYKELMALEEALENGLTGVREKQSEFM----KMMRTNERMMEEENKRLNY 122
           +L GED+  LN KEL  LE  L+  L  VR  ++++M      ++  E ++ + N+ L+ 
Sbjct: 111 NLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSM 170

[Close]

BLAST of Cucsa.018420 vs. NCBI nr
Match: gi|48727608|gb|AAT46101.1| (PISTILLATA-like protein [Akebia trifoliata])

HSP 1 Score: 213.0 bits (541), Expect = 4.0e-52
Identity = 117/212 (55.19%), Postives = 141/212 (66.51%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENS+NRQVTYSKRRNGI+KKAKEIT+LCDAQVSLVIF+S+GKM +YCSP
Sbjct: 1   MGRGKIEIKRIENSTNRQVTYSKRRNGIMKKAKEITILCDAQVSLVIFSSTGKMSDYCSP 60

Query: 61  STP-------------------------------------------HLRGEDITSLNYKE 120
           ST                                            HL+GEDITSLN KE
Sbjct: 61  STTLTKVLDRYQKTSGKRLWDAKHEYLSTEVDRIKKENDCMQIELRHLKGEDITSLNPKE 120

Query: 121 LMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMD 169
           L+ +EEALENGL  VR KQ E++KM++ NER +EEENK L   L+ +++   G+   EM+
Sbjct: 121 LIPIEEALENGLVNVRAKQMEYLKMLKKNERYLEEENKHLRCILHHQQIEIEGNMRMEME 180

[Close]

BLAST of Cucsa.018420 vs. NCBI nr
Match: gi|793418639|ref|NP_001292651.1| (floral homeotic protein PMADS 2 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 6.9e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 64  HLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQ 123
           HLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQ
Sbjct: 107 HLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQ 166

Query: 124 KEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRVQPIQPNLQERE 169
           KEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRVQPIQPNLQERE
Sbjct: 167 KEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRVQPIQPNLQERE 211

[Close]

BLAST of Cucsa.018420 vs. NCBI nr
Match: gi|793418639|ref|NP_001292651.1| (floral homeotic protein PMADS 2 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 1.9e-38
Identity = 111/221 (50.23%), Postives = 126/221 (57.01%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60

Query: 61  STPHLRGEDITSLNYKE-----LMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENK 120
           STP +   DI    +K+       A  E L N +  V+++       +R    +  E+  
Sbjct: 61  STPLV---DILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELR---HLRGEDIT 120

Query: 121 RLNYELYQKEMVAMGDS-------VREMDI------------------------------ 169
            LNY    KE++A+ ++       VRE                                 
Sbjct: 121 SLNY----KELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMV 180

HSP 2 Score: 210.3 bits (534), Expect = 2.6e-51
Identity = 111/209 (53.11%), Postives = 143/209 (68.42%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENS+NRQVT+SKRRNGIIKKA+EI+VLC+AQVS+VIF+SSGKM EYCSP
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRNGIIKKAREISVLCEAQVSVVIFSSSGKMSEYCSP 60

Query: 61  STP-------------------------------------------HLRGEDITSLNYKE 120
           ST                                            HL+GED+ SL  KE
Sbjct: 61  STSLPKILERCQVNCGKKIWDPKHEHLSAEIDRIKKENDNMQIQLRHLKGEDLNSLQPKE 120

Query: 121 LMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMD 167
           L+ +EEALENG+ GVREKQ++F++M++ NER++EE+NKRL Y L+ +++ AM +++R ++
Sbjct: 121 LIPIEEALENGIRGVREKQNDFLRMLKKNERILEEDNKRLTYILHHQQL-AMDENMRNLE 180

[Close]

BLAST of Cucsa.018420 vs. NCBI nr
Match: gi|1009136864|ref|XP_015885755.1| (PREDICTED: floral homeotic protein PMADS 2 [Ziziphus jujuba])

HSP 1 Score: 209.9 bits (533), Expect = 3.4e-51
Identity = 115/196 (58.67%), Postives = 139/196 (70.92%), Query Frame = 1


Query: 1   MARGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60
           M RGKIEIKRIENS+NRQVTY+KRRNGIIKKAKEITVLCDA+VSL+IF+SSGKM +YCSP
Sbjct: 1   MGRGKIEIKRIENSTNRQVTYTKRRNGIIKKAKEITVLCDAKVSLIIFSSSGKMQQYCSP 60

Query: 61  STP----------------------------HLRGEDITSLNYKELMALEEALENGLTGV 120
           ST                             HL GEDITSLN++ELMA+E+AL+ GL  +
Sbjct: 61  STTLVDILDNYHKQSGKRLWDAKHEVCIYCRHLNGEDITSLNHRELMAIEDALDKGLASI 120

Query: 121 REKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDI-GYNQRMRDFNSQM 168
           R+K+ E +  +R N  M+EEE+K+L Y L+QKE + + + VREMDI GY      +NS M
Sbjct: 121 RDKEVEVINNIRENGEMLEEEHKQLRYRLHQKE-IELEEKVREMDINGY------YNSHM 180

[Close]

BLAST of Cucsa.018420 vs. NCBI nr
Match: gi|659086972|ref|XP_008444207.1| (PREDICTED: floral homeotic protein PMADS 2 isoform X1 [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 9.9e-51
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 1


Query: 64  HLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQ 123
           HLRGEDITSLNYKELM+LEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQ
Sbjct: 144 HLRGEDITSLNYKELMSLEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQ 203

Query: 124 KEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRVQPIQPNLQERE 169
           KEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRVQPIQPN QERE
Sbjct: 204 KEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRVQPIQPNPQERE 248

The following BLAST results are available for this feature:

BLAST of Cucsa.018420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MADS2_PETHY	7.9e-32	45.50	Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1	[more]
GLOB_ANTMA	5.1e-31	44.39	Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1	[more]
MADS2_ORYSJ	7.4e-30	39.71	MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV...	[more]
FBP1_PETHY	3.7e-29	42.58	Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1	[more]
GLOB_TOBAC	6.3e-29	42.31	Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1	[more]

BLAST of Cucsa.018420 vs. TrEMBL


Match Name	E-value	Identity	Description
Q6GWU9_9MAGN	2.8e-52	55.19	PISTILLATA-like protein OS=Akebia trifoliata GN=PI-1 PE=2 SV=1	[more]
Q9ZTQ9_CUCSA	4.8e-52	100.00	MADS box protein 26 OS=Cucumis sativus GN=CUM26 PE=2 SV=1	[more]
Q9ZTQ9_CUCSA	1.4e-38	50.23	MADS box protein 26 OS=Cucumis sativus GN=CUM26 PE=2 SV=1	[more]
A5YBR9_TROAR	1.0e-49	54.25	MADS-box transcription factor PI-like 2 OS=Trochodendron aralioides GN=PI2 PE=2 ...	[more]
A3QQT2_PERAE	6.5e-49	52.86	PI.2 OS=Persea americana PE=2 SV=1	[more]

BLAST of Cucsa.018420 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20240.1	4.5e-25	39.32	K-box region and MADS-box transcription factor family protein	[more]
AT3G54340.1	5.8e-25	40.76	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.1	2.5e-20	34.51	K-box region and MADS-box transcription factor family protein	[more]
AT1G24260.2	7.4e-20	36.55	K-box region and MADS-box transcription factor family protein	[more]
AT3G02310.1	1.6e-19	34.23	K-box region and MADS-box transcription factor family protein	[more]

BLAST of Cucsa.018420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|48727608\|gb\|AAT46101.1\|	4.0e-52	55.19	PISTILLATA-like protein [Akebia trifoliata]	[more]
gi\|793418639\|ref\|NP_001292651.1\|	6.9e-52	100.00	floral homeotic protein PMADS 2 [Cucumis sativus]	[more]
gi\|793418639\|ref\|NP_001292651.1\|	1.9e-38	50.23	floral homeotic protein PMADS 2 [Cucumis sativus]	[more]
gi\|1009136864\|ref\|XP_015885755.1\|	3.4e-51	58.67	PREDICTED: floral homeotic protein PMADS 2 [Ziziphus jujuba]	[more]
gi\|659086972\|ref\|XP_008444207.1\|	9.9e-51	98.10	PREDICTED: floral homeotic protein PMADS 2 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox
IPR002487	TF_Kbox
IPR002100	TF_MADSbox
IPR002487	TF_Kbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding
GO:0046983	protein dimerization activity
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.018420.2	Cucsa.018420.2	mRNA
Cucsa.018420.1	Cucsa.018420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 6.8E-29coord: 38..59 score: 6.8E-29coord: 3..23 score: 6.8
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 score: 6.9
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 5.7
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57 scor
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 31
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 3..68 score: 1.27
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 62..106 score: 2.
IPR002487	Transcription factor, K-box	PROFILE	PS51297	K_BOX	coord: 41..135 score:
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..153 score: 1.5
None	No IPR available	PANTHER	PTHR11945:SF97	FLORAL HOMEOTIC PROTEIN PISTILLATA	coord: 2..153 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.018420	Cla023193	Watermelon (97103) v1	cgywmB488
Cucsa.018420	Csa4G358770	Cucumber (Chinese Long) v2	cgycuB380
Cucsa.018420	MELO3C010515	Melon (DHL92) v3.5.1	cgymeB441
Cucsa.018420	ClCG11G016000	Watermelon (Charleston Gray)	cgywcgB461
Cucsa.018420	CSPI04G17540	Wild cucumber (PI 183967)	cgycpiB400
Cucsa.018420	CmaCh01G013650	Cucurbita maxima (Rimu)	cgycmaB0737
Cucsa.018420	CmoCh01G014180	Cucurbita moschata (Rifu)	cgycmoB0726
Cucsa.018420	Lsi04G018380	Bottle gourd (USVL1VR-Ls)	cgylsiB427
Cucsa.018420	Cp4.1LG02g03120	Cucurbita pepo (Zucchini)	cgycpeB0696
Cucsa.018420	MELO3C010515.2	Melon (DHL92) v3.6.1	cgymedB437
Cucsa.018420	CsaV3_4G028010	Cucumber (Chinese Long) v3	cgycucB405
Cucsa.018420	Cla97C11G221980	Watermelon (97103) v2	cgywmbB462
Cucsa.018420	Bhi09G002277	Wax gourd	cgywgoB539
Cucsa.018420	Carg00312	Silver-seed gourd	carcgyB0749

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None