Cucsa.016410 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.016410
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionBeta-carotene isomerase D27
Locationscaffold00227 : 87484 .. 91552 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTAAGAGTTATTCAAGATACGAGAGTCATTTTGCCAACAATGATGAACAACAACAAAATGAAGTTGAGAAGAAAAAGCATTCTTTGTTTTGGAGTGCTCACAAGACCAGCAGAGGGTGAATTAATAGAAGAAACAAGAAAAACCAATACTGTTTATACAGATAATTGGTTTGATAAAATTGCCATAGACCATTTGTCTCAGGCAGTACAAGCAACATCAGGTTTGTTTTCTTTCTTTCTTTtTTtCTTGGAAAGATTTGGAAAAGATGGGGAAAAAGAAGATTGATATTAGAATTATGATATGCAGGTTGGAGAAGCAAAAAGAGTGGATATGAAAGCTTGGTGGAAGTGACAACAATGGCATCAAGAAATTTCAACCACATCAAACAAAAAGAAGTTGTCATTCAAGCCCTTGGAATGGCATTTCCAAAGCCAATCCTCTCTTTGGTAAACTTCATTCGTTGTCATTTAATACTCCCAGTATGTTTCATTCATTACCATTTAATAACGTTCACTATTCTTTTAGATTTCTAGCCTTCCTCTCTTTCATGATCTATGTATTATATTATGCATACCATACCATGCATACATGTAAAATATCTATCACCAAACACACCATTAAATATGCGAATTGTGGTTATCTAAATTAACACGAGTATGTGTCGATAACCAAGAGAATTGTAATTCGAATTCTCATCTCCATTGCACTAAAACAAAAaCAAAAACATATCAAAAAaGATTATATGAAAAGTCCTTGCAGTAACTTTTACTTTAATCAATGGTGCAAATAATATTATTATCTCAAGAGTCGTTCTCATTTAAAAATCACATCAATGAATCACATTTATATATGTTTAGTGTAGTGATTGCAGGAACAGAGATCAAAACACTAACTTATGTTCATGTTAATTAAGGGAGCTAAACTCACTCAATTACCTTAAATTACTTATTTACCTATTGTATTTGTCAATTGTTAAATAATTGATTTAAGGTGAGTAATGCATGATCATTTCATCCTTGATGAATTTTGTTTGAACCAAAATGTTGTCTCCGTTTGTTTGGTCTCTCTTCTCCCATCAACACTTGGGAGAATATAGCTAGGATCATTGCCTAGGTTAGAACCTACTGAAAAACTATACCCTTCTCTAATTTTTCTTTCAAGTAATCATTGGGTTTAATAATTATTTGATTGTCATGTCATTATATGGAAACAGTATCATCAAATGGTCACATTTTTTATGTTAGTTTATTATAAATAAGTATTAAAATTTTGCTTTTACTATTATTAATTCATCTCCATATTTTCATTTTACTATTATACCCTCAATCCTCCCAACTATATTGCCCTTGACACATAGTGGTGAACAAAGTGCAGATAAAAGCATTGCTACCACAATCCAAATTAGCAAGGGAATATTTTGCTGCATTCACCACTGTCTTCTTTGCTTGGTTAGTTGGACCCTGCGAGGTAAGATGTTGTAAATTTACCTAAAGGCCTCTTTATTTCCTCAGTGTATGTTCATAGAAATCCAAGGCCCTAATTGGGCATTCACTTGCATGCATACACAAATACACACAAGAGAGGCTAATCTCAGCATAACCTAAATATTAAGGTATATATGGCTAATTAAGAGGTTAAAAGTTTGAATTCCTCGTGATTGAATAAGGGAGAGACATATTTATAATTAACATTTTCTTTCTTTTGGGTTGAAAAGTTAGAGGCTGACTTGTGCATAACTCAACTGTTAGGACAAGTATCATCAATCAAGAGATCAAAAGTTTAAATCTTATTGTTACGACAAGTATCAACGATCAAGATATTAAAAGCTTAAATTCTCTACCCATGTGTTAGAATTCAGCTTGTCCTATGTGAATTCAGTTGGTCCTCTATCTTTTGTATTGGAAAACTAAGTAAGTGCTCAAGGCCACTATTTAAGACCGATGTCAAAGAATTTGCTGAGAATAGATAGTATTTAAATGGAGGATATTGAACAACCAAGATCAGAATTAAACTAAGTAAGTGCTCAAGGCCACTATTTAAGACCGATGTCAAAGAATTTGCTGAGAATAGATAGTATTTAAATGGAGGATATTGAACAACCAAGATCAGAATTAGAAGAGATTCACAAGGTTGAAAAGACTGACATATGAGGAGGCATACTGGTGGACATCAAGAACTTCACCTTTAGCACTATATTGAATATAATAATACGATTTTCAATGGCCAAGTTGATAAACCTGCAGTGTTTGAGGCACTAGTCCCTTCTAGACTTGTCCTGTCCCTACAAATCAAAGAACGGTTTTTGTGACGTAAGATATATGAACCAATTCTTTGAGAAAACTATATTCTCTTCATGGTTAATCACTTTGACCCTTTCCCTTTCTAGACATTCCTTAAAATTTAAATTAAACACAGCTGATATGCCTAGATTGTTATGGAGGGAGGGATTGAAATAGCACACACATGGAAGGAACAAGTTTTTTttTTtCCAATTGACTAATTCGTAAGACTGACAATGGTAACAAATGATTCTTACAGGTGAAGGAATCAGAATTCAAAGGGAAAAGAGAAAAGAACGTGGTTCAAATCCATAAGTGCAGGTAATTCCTTCTCGCATCAGAGTTATAATTAAGGCAATGCTATCTAAACGTTCATGGGTCCCATTCTCACCTACCTGAGATACTTTCCACACCCAAAGAACCATTTGTCTATAATTACTATACGCTTCTTCTAAACCCTTAGTACTTAATCACATTAAGTGATATCCATCATTCACATCATTGAAAATTTGAAATTGTCCTCGTCAAAATTAACATTCAGCAAATCTATTTTGCCCCTAAACATATCCCATTTATTTGCAGGTTCCTAGAGCAAACTAATTGTGCTGGAATGTGCATTAATCTATGCAAGTTTCCATGTCAGGATTTCATCAAGGATTCCTTGGGAATGCCAGTCACCATGGTCCCCAGTAAGTCTCCTCACTAACCTACCGATTCACCAACCAATTGCAGCAACCATATATTGTTTTCCCAAAAGAAAAaCAAATTTCAACTTTTCAAAACAATAAGGATAATAATAAATTTAAAAGAAGATCAAACTCACACACACTGCCGCACAAGGCAATTCTAGACACTAATTCAGGCTTCCAAACGTAAATGGAGACCATAATTCTTATTTCTCACAACTCTGTAATATTCGGTTGTCAGAAAAAATTATAGAAAACTAAATCACAGCTAGCCACCTGGCTTGAGCTCATTCCTTCAATGCATTTTATATTAATTAGATTGGCTCTTCATTGACCACTAAGCCAACCTATGGTGGTTACCTCAAGGCAATTATAATATAAAAACTTCATATTCACATATAGAGGAATATTAGAAGTAAATTATTTCAGCTGAATCTATATAGTCTAGATGTGCGGACACTAAATAAAGTAAATCAGCTATAGTATAATGACCAATGACTGGTAGATCCATGAGCAAAAGTGAAATTACTATTAAAGCAACATTACCAGCACCAAATGGTGGAACGGATCATGTTTGTCAATGTGAATGGAGGGTCCCATGTACGAACCATTTTGGGTACAAAAGAACTGCAGGTAGGCCCCAACCAAGCTAAGTGGGATTCCAAACCTGCAGCTTAATTTTGCGATATGGTTACAATCCAAGAATTAAAAGCTGAATTTCCATCGTTAATCAATCATCAAGCTGAATTTCACACTAAGCCAATCATCGATCTTGTCCATGATATACATTAATCATCACAAGTGTAAAAAATGCAACCAAGAAGAGGCATTAGTATTAGGATGTTGATTGTGCACCATGATGTAACGACTAGCTGGGAACCATTAGTATTCATGTCTAGGACCAAGAAATGAATCAATATGAAAGGGGAACTTGGGAGCAAAAAaGAGGGGAGCAGGGGGGAAGAAGCTTTAACGTGATTCCAATAACTGTCTTTTTCTTTGCAGATTTTGATGACATGAGCTGTGAGATGATCTTTGGAAAGGAACCACCAGCTTCAATCGATGATCCAGCGCTTAAGCAACCATGTTACAAACTAT

mRNA sequence

ATGGATTTAAGAGTTATTCAAGATACGAGAGTCATTTTGCCAACAATGATGAACAACAACAAAATGAAGTTGAGAAGAAAAAGCATTCTTTGTTTTGGAGTGCTCACAAGACCAGCAGAGGGTGAATTAATAGAAGAAACAAGAAAAACCAATACTGTTTATACAGATAATTGGTTTGATAAAATTGCCATAGACCATTTGTCTCAGGCAGTACAAGCAACATCAGGTTGGAGAAGCAAAAAGAGTGGATATGAAAGCTTGGTGGAAGTGACAACAATGGCATCAAGAAATTTCAACCACATCAAACAAAAAGAAGTTGTCATTCAAGCCCTTGGAATGGCATTTCCAAAGCCAATCCTCTCTTTGATAAAAGCATTGCTACCACAATCCAAATTAGCAAGGGAATATTTTGCTGCATTCACCACTGTCTTCTTTGCTTGGTTAGTTGGACCCTGCGAGGTGAAGGAATCAGAATTCAAAGGGAAAAGAGAAAAGAACGTGGTTCAAATCCATAAGTGCAGGTTCCTAGAGCAAACTAATTGTGCTGGAATGTGCATTAATCTATGCAAGTTTCCATGTCAGGATTTCATCAAGGATTCCTTGGGAATGCCAGTCACCATGGTCCCCAATTTTGATGACATGAGCTGTGAGATGATCTTTGGAAAGGAACCACCAGCTTCAATCGATGATCCAGCGCTTAAGCAACCATGTTACAAACTAT

Coding sequence (CDS)

ATGGATTTAAGAGTTATTCAAGATACGAGAGTCATTTTGCCAACAATGATGAACAACAACAAAATGAAGTTGAGAAGAAAAAGCATTCTTTGTTTTGGAGTGCTCACAAGACCAGCAGAGGGTGAATTAATAGAAGAAACAAGAAAAACCAATACTGTTTATACAGATAATTGGTTTGATAAAATTGCCATAGACCATTTGTCTCAGGCAGTACAAGCAACATCAGGTTGGAGAAGCAAAAAGAGTGGATATGAAAGCTTGGTGGAAGTGACAACAATGGCATCAAGAAATTTCAACCACATCAAACAAAAAGAAGTTGTCATTCAAGCCCTTGGAATGGCATTTCCAAAGCCAATCCTCTCTTTGATAAAAGCATTGCTACCACAATCCAAATTAGCAAGGGAATATTTTGCTGCATTCACCACTGTCTTCTTTGCTTGGTTAGTTGGACCCTGCGAGGTGAAGGAATCAGAATTCAAAGGGAAAAGAGAAAAGAACGTGGTTCAAATCCATAAGTGCAGGTTCCTAGAGCAAACTAATTGTGCTGGAATGTGCATTAATCTATGCAAGTTTCCATGTCAGGATTTCATCAAGGATTCCTTGGGAATGCCAGTCACCATGGTCCCCAATTTTGATGACATGAGCTGTGAGATGATCTTTGGAAAGGAACCACCAGCTTCAATCGATGATCCAGCGCTTAAGCAACCATGTTACAAACTAT

Protein sequence

MDLRVIQDTRVILPTMMNNNKMKLRRKSILCFGVLTRPAEGELIEETRKTNTVYTDNWFDKIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPILSLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTNCAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKLX
Homology
[Close]
BLAST of Cucsa.016410 vs. Swiss-Prot
Match: D27_ORYSJ (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica GN=D27 PE=1 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.1e-66
Identity = 119/188 (63.30%), Postives = 147/188 (78.19%), Query Frame = 1 

Query: 52  TVYTDNWFDKIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQAL 111
           TVY D+WFDK+AI +LS+ +Q  SG +++K GYESL++     SR F+  KQ E+V QAL
Sbjct: 78  TVYRDSWFDKLAIGYLSRNLQEASGLKNEKDGYESLIDAALAISRIFSLDKQSEIVTQAL 137

Query: 112 GMAFPKPILSLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIH 171
             A P  IL++IK ++P S+ +REYFAAFTT+FF WLVGPCEV ESE +G++EKNVV I 
Sbjct: 138 ERALPSYILTMIKVMMPPSRFSREYFAAFTTIFFPWLVGPCEVMESEVEGRKEKNVVYIP 197

Query: 172 KCRFLEQTNCAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDP 231
           KCRFLE TNC GMC NLCK PCQ FI+DSLGM V M PNF+DMSCEMIFG++PP   DDP
Sbjct: 198 KCRFLESTNCVGMCTNLCKIPCQKFIQDSLGMKVYMSPNFEDMSCEMIFGQQPPE--DDP 257

Query: 232 ALKQPCYK 240
           ALKQPC++
Sbjct: 258 ALKQPCFR 263

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BLAST of Cucsa.016410 vs. Swiss-Prot
Match: D27_ARATH (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.0e-56
Identity = 113/236 (47.88%), Postives = 158/236 (66.95%), Query Frame = 1 

Query: 15  TMMNNNKMKLRRKSILCFGVLTRPA-EGEL--------IEETRKTNTVYTDNWFDKIAID 74
           T  N+ +  L R+S +   + ++P   G+L        IE +   N    D++F KIAI+
Sbjct: 17  TWFNDTRSGLDRRSSISPTLCSKPVYSGKLKAAKETARIETSNTKNASIEDSFFSKIAIN 76

Query: 75  HLSQAVQATSGWR--SKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPILSLI 134
           +LS+ +Q  +G    SK + Y+ LV+  T  SRNF+  +Q E V+ +L  A P  I SLI
Sbjct: 77  YLSKNLQDAAGISSSSKSTDYDRLVDTATRVSRNFDTKQQHEFVLSSLDRALPTVISSLI 136

Query: 135 KALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTNCAG 194
           K   P SK++RE FA FTT+ FAWLVGP EV+E+E  G++EK+VV I KCRFLEQ+NC G
Sbjct: 137 KMAFPPSKVSRELFALFTTISFAWLVGPSEVRETEVNGRKEKSVVYIEKCRFLEQSNCVG 196

Query: 195 MCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYK 240
           MC ++CK P Q FIK+SLGMP+ M P+F+D+SC+M+FG+EPP   DDPA+KQPC++
Sbjct: 197 MCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCFE 252

[Close]
BLAST of Cucsa.016410 vs. TrEMBL
Match: A0A0A0LIR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G226860 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 5.8e-136
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 1 

Query: 1   MDLRVIQDTRVILPTMMNNNKMKLRRKSILCFGVLTRPAEGELIEETRKTNTVYTDNWFD 60
           MDLRVIQDTRVILPTMMNNNKMKLRRKSILCFGVLTRPAEGELIEETRKTNTVYTDNWFD
Sbjct: 1   MDLRVIQDTRVILPTMMNNNKMKLRRKSILCFGVLTRPAEGELIEETRKTNTVYTDNWFD 60

Query: 61  KIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPIL 120
           KIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPIL
Sbjct: 61  KIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPIL 120

Query: 121 SLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTN 180
           SLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTN
Sbjct: 121 SLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTN 180

Query: 181 CAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL 240
           CAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL
Sbjct: 181 CAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL 240

[Close]
BLAST of Cucsa.016410 vs. TrEMBL
Match: R4HZ96_MEDTR (Beta-carotene isomerase D27 OS=Medicago truncatula GN=MTR_1g471050 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 4.4e-83
Identity = 149/240 (62.08%), Postives = 186/240 (77.50%), Query Frame = 1 

Query: 1   MDLRVIQDTRVILPTMMNNNKMKLRRKSILCFGVLTRPAEGELIEETRKTNTVYTDNWFD 60
           MD ++I     + PT+    K++L+ K     GVL RP + ++ EET +   VY DNWFD
Sbjct: 1   MDSKMIAHNMSLTPTLAQWKKLRLKPKHTFVVGVLARPTD-DISEETLRKTNVYKDNWFD 60

Query: 61  KIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPIL 120
           K+AI+HLS++VQA +G  + KSG++SLVE  T+AS+ FN  +Q+ +++ AL  AFPKPIL
Sbjct: 61  KLAINHLSKSVQAATGISNNKSGFDSLVEAATVASQKFNTTQQQGIILDALDRAFPKPIL 120

Query: 121 SLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTN 180
           S+I+ ++P SKLAREYFA FTT+FFAWL+GP EV+ESE  G+REKN+V I KCRFLE+TN
Sbjct: 121 SVIRRVMPPSKLAREYFAVFTTIFFAWLLGPSEVRESEINGRREKNIVHIKKCRFLEETN 180

Query: 181 CAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL 240
           C GMCINLCK P Q FIKDS GMPV MVPNFDDMSCEMIFG+EPPAS DDPALKQPCYKL
Sbjct: 181 CVGMCINLCKMPSQLFIKDSFGMPVNMVPNFDDMSCEMIFGQEPPASTDDPALKQPCYKL 239

[Close]
BLAST of Cucsa.016410 vs. TrEMBL
Match: M5VKD0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019954mg PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 7.3e-78
Identity = 147/233 (63.09%), Postives = 174/233 (74.68%), Query Frame = 1 

Query: 23  KLRRKSILCFGVLTRPAEG---------------ELIEETRKTNTVYTDNWFDKIAIDHL 82
           KLR  SI    VLTRPAE                +++    + + VY DNWFD++AI+HL
Sbjct: 28  KLRHCSIAA--VLTRPAENINIATGKSRTIIIPADVVTGAEEKSRVYNDNWFDRMAINHL 87

Query: 83  SQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPILSLIKALL 142
           SQ VQA +G ++ KSG+ESL E  T ASR FN  KQ+E+VIQAL  AFPKPI SL++A+L
Sbjct: 88  SQNVQAATGLKNNKSGFESLAEAATAASRKFNPAKQRELVIQALDSAFPKPIFSLLRAIL 147

Query: 143 PQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTNCAGMCIN 202
           PQSK AREYFA FTT+FFAWLVGPCEV+ESE  G++EKNVV I KCRFLE+TNC GMCIN
Sbjct: 148 PQSKFAREYFAIFTTIFFAWLVGPCEVRESELDGRKEKNVVYIKKCRFLEETNCVGMCIN 207

Query: 203 LCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL 241
           +CK P Q FIK SLG PV MVPNFDDMSCEMIFG++PP   +DPALKQPC+KL
Sbjct: 208 MCKMPSQSFIKSSLGTPVNMVPNFDDMSCEMIFGQDPPELSNDPALKQPCFKL 258

[Close]
BLAST of Cucsa.016410 vs. TrEMBL
Match: F6HBJ4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0179g00330 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 9.5e-78
Identity = 145/215 (67.44%), Postives = 172/215 (80.00%), Query Frame = 1 

Query: 26  RKSILCFGVLTRPAEGELIEETRKTNTVYTDNWFDKIAIDHLSQAVQATSGWRSKKSGYE 85
           R S     VL RPA+   +   ++T ++ TDNWFD+IAI+HLSQ+VQAT+G R+ KSGYE
Sbjct: 24  RSSPPILAVLARPADNLTL--VKETPSLLTDNWFDRIAINHLSQSVQATTGLRNSKSGYE 83

Query: 86  SLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPILSLIKALLPQSKLAREYFAAFTTVFF 145
           SLVE   M SRNF+ I+Q E+VI+AL  AFP PILSLI+ L+PQSK  REYFAAFTT+FF
Sbjct: 84  SLVEAAAMVSRNFDPIQQCELVIEALNKAFPSPILSLIRTLMPQSKFTREYFAAFTTLFF 143

Query: 146 AWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTNCAGMCINLCKFPCQDFIKDSLGMPV 205
           AWLVGPC+V ESE  G+REKNVV I KCRFLE++NC GMC+NLCK P Q FIKDSLGMPV
Sbjct: 144 AWLVGPCKVIESEINGRREKNVVHIKKCRFLEESNCVGMCLNLCKNPSQKFIKDSLGMPV 203

Query: 206 TMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL 241
            MVPNFDDMSC+MIFG++PP   DDP L+QPCYKL
Sbjct: 204 NMVPNFDDMSCQMIFGQDPPG--DDPVLRQPCYKL 234

[Close]
BLAST of Cucsa.016410 vs. TrEMBL
Match: A0A0B2PSH0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_019129 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 9.5e-78
Identity = 145/206 (70.39%), Postives = 166/206 (80.58%), Query Frame = 1 

Query: 35  LTRPAEGELIEETRKTNTVYTDNWFDKIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMA 94
           + R     +  ETRKTN  Y DN FD++AI HLS++VQ  +G  + KSGYESLVE  T+A
Sbjct: 1   MLRTPSDNITGETRKTNA-YKDNLFDRLAIHHLSKSVQEATGLGNNKSGYESLVEAATVA 60

Query: 95  SRNFNHIKQKEVVIQALGMAFPKPILSLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEV 154
              F+ I+Q+EV+IQAL  AFPKPILSLIK LLP SKL+REYFA FTT+FFAWLVGP EV
Sbjct: 61  KMKFDPIQQQEVIIQALHRAFPKPILSLIKTLLPPSKLSREYFAVFTTLFFAWLVGPSEV 120

Query: 155 KESEFKGKREKNVVQIHKCRFLEQTNCAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDM 214
           +ESE  G+REKNVV + KCRFLE+TNC GMCINLCK P Q FIKD+LGMPV MVPNFDDM
Sbjct: 121 RESEVNGRREKNVVYVTKCRFLEETNCVGMCINLCKMPSQSFIKDTLGMPVNMVPNFDDM 180

Query: 215 SCEMIFGKEPPASIDDPALKQPCYKL 241
           SCEMIFG+EPPAS DDPALKQPCYKL
Sbjct: 181 SCEMIFGQEPPASTDDPALKQPCYKL 205

[Close]
BLAST of Cucsa.016410 vs. TAIR10
Match: AT1G03055.1 (AT1G03055.1 unknown protein)

HSP 1 Score: 219.2 bits (557), Expect = 2.8e-57
Identity = 113/236 (47.88%), Postives = 158/236 (66.95%), Query Frame = 1 

Query: 15  TMMNNNKMKLRRKSILCFGVLTRPA-EGEL--------IEETRKTNTVYTDNWFDKIAID 74
           T  N+ +  L R+S +   + ++P   G+L        IE +   N    D++F KIAI+
Sbjct: 17  TWFNDTRSGLDRRSSISPTLCSKPVYSGKLKAAKETARIETSNTKNASIEDSFFSKIAIN 76

Query: 75  HLSQAVQATSGWR--SKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPILSLI 134
           +LS+ +Q  +G    SK + Y+ LV+  T  SRNF+  +Q E V+ +L  A P  I SLI
Sbjct: 77  YLSKNLQDAAGISSSSKSTDYDRLVDTATRVSRNFDTKQQHEFVLSSLDRALPTVISSLI 136

Query: 135 KALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTNCAG 194
           K   P SK++RE FA FTT+ FAWLVGP EV+E+E  G++EK+VV I KCRFLEQ+NC G
Sbjct: 137 KMAFPPSKVSRELFALFTTISFAWLVGPSEVRETEVNGRKEKSVVYIEKCRFLEQSNCVG 196

Query: 195 MCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYK 240
           MC ++CK P Q FIK+SLGMP+ M P+F+D+SC+M+FG+EPP   DDPA+KQPC++
Sbjct: 197 MCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCFE 252

[Close]
BLAST of Cucsa.016410 vs. TAIR10
Match: AT1G64680.1 (AT1G64680.1 unknown protein)

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-37
Identity = 71/154 (46.10%), Postives = 99/154 (64.29%), Query Frame = 1 

Query: 84  YESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPILSLIKALLPQSKLAREYFAAFTTV 143
           YES VEV+    +  + ++Q+E V + L    P       + L P +K A E+ AA T  
Sbjct: 77  YESFVEVSKRVMQGRSRVQQQEAVREVLLSMLPPGAPEQFRKLFPPTKWAAEFNAALTVP 136

Query: 144 FFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTNCAGMCINLCKFPCQDFIKDSLGM 203
           FF WLVGP +V E E  G ++++ V+I KCR+LE + C GMC+N+CK P QDF  +  G+
Sbjct: 137 FFHWLVGPSQVIEVEVNGVKQRSGVRIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGL 196

Query: 204 PVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPC 238
           P+TM PN++DMSCEMI+G+ PPA  +D A KQPC
Sbjct: 197 PLTMNPNYEDMSCEMIYGQAPPAFEEDVATKQPC 230

[Close]
BLAST of Cucsa.016410 vs. TAIR10
Match: AT4G01995.1 (AT4G01995.1 unknown protein)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-24
Identity = 62/169 (36.69%), Postives = 91/169 (53.85%), Query Frame = 1 

Query: 76  GWRSKKSGYESLVE-VTTMASRNFNHIKQKEVVIQALGMAFPKPILSLIKALLP---QSK 135
           G  S+K GY  L+E V  +  +     +  +  ++ L   FP  IL L K L+    Q K
Sbjct: 74  GSDSEKPGYVGLIELVKLLLLKGRTRSETSDAAVRILKSLFPPLILELYKLLIAPIAQGK 133

Query: 136 LAREYFAAFTTVFFAWLVGPCEVKESEF-KGKREKNVVQIHKCRFLEQTNCAGMCINLCK 195
           LA    A  T +   WL+GP +V   +   G+   + V + KC++LE++ C G+CIN CK
Sbjct: 134 LAALMVARVTVLTCQWLMGPSKVNIIDLPNGESWDSGVFVEKCQYLEESKCVGVCINTCK 193

Query: 196 FPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYK 240
            P Q F KD +G+P+ M PNF D SC+  FG  PP   DD  + +PC++
Sbjct: 194 LPTQTFFKDYMGVPLVMEPNFKDYSCQFKFGVAPPE--DDGNVNEPCFE 240

[Close]
BLAST of Cucsa.016410 vs. NCBI nr
Match: gi|449455260|ref|XP_004145371.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus])

HSP 1 Score: 491.5 bits (1264), Expect = 8.4e-136
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 1 

Query: 1   MDLRVIQDTRVILPTMMNNNKMKLRRKSILCFGVLTRPAEGELIEETRKTNTVYTDNWFD 60
           MDLRVIQDTRVILPTMMNNNKMKLRRKSILCFGVLTRPAEGELIEETRKTNTVYTDNWFD
Sbjct: 1   MDLRVIQDTRVILPTMMNNNKMKLRRKSILCFGVLTRPAEGELIEETRKTNTVYTDNWFD 60

Query: 61  KIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPIL 120
           KIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPIL
Sbjct: 61  KIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPIL 120

Query: 121 SLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTN 180
           SLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTN
Sbjct: 121 SLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTN 180

Query: 181 CAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL 240
           CAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL
Sbjct: 181 CAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL 240

[Close]
BLAST of Cucsa.016410 vs. NCBI nr
Match: gi|659096928|ref|XP_008449360.1| (PREDICTED: LOW QUALITY PROTEIN: beta-carotene isomerase D27, chloroplastic [Cucumis melo])

HSP 1 Score: 466.8 bits (1200), Expect = 2.2e-128
Identity = 228/240 (95.00%), Postives = 231/240 (96.25%), Query Frame = 1 

Query: 1   MDLRVIQDTRVILPTMMNNNKMKLRRKSILCFGVLTRPAEGELIEETRKTNTVYTDNWFD 60
           MDLRVIQDT VILPTMMNNNKMKLRRK+    GVLTR AEGE+IEETRKT TVYTDNWFD
Sbjct: 1   MDLRVIQDTTVILPTMMNNNKMKLRRKTFFXVGVLTRSAEGEVIEETRKTKTVYTDNWFD 60

Query: 61  KIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPIL 120
           KIAIDHLSQAVQATSGWRSKKSGYESL+EVTTMASRNFNHIKQKEVVIQALG AFPKPIL
Sbjct: 61  KIAIDHLSQAVQATSGWRSKKSGYESLLEVTTMASRNFNHIKQKEVVIQALGRAFPKPIL 120

Query: 121 SLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTN 180
           SLIKALLPQSK AREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTN
Sbjct: 121 SLIKALLPQSKFAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTN 180

Query: 181 CAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL 240
           CAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL
Sbjct: 181 CAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL 240

[Close]
BLAST of Cucsa.016410 vs. NCBI nr
Match: gi|922402901|ref|XP_013468586.1| (beta-carotene isomerase D27 [Medicago truncatula])

HSP 1 Score: 315.8 bits (808), Expect = 6.3e-83
Identity = 149/240 (62.08%), Postives = 186/240 (77.50%), Query Frame = 1 

Query: 1   MDLRVIQDTRVILPTMMNNNKMKLRRKSILCFGVLTRPAEGELIEETRKTNTVYTDNWFD 60
           MD ++I     + PT+    K++L+ K     GVL RP + ++ EET +   VY DNWFD
Sbjct: 1   MDSKMIAHNMSLTPTLAQWKKLRLKPKHTFVVGVLARPTD-DISEETLRKTNVYKDNWFD 60

Query: 61  KIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPIL 120
           K+AI+HLS++VQA +G  + KSG++SLVE  T+AS+ FN  +Q+ +++ AL  AFPKPIL
Sbjct: 61  KLAINHLSKSVQAATGISNNKSGFDSLVEAATVASQKFNTTQQQGIILDALDRAFPKPIL 120

Query: 121 SLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTN 180
           S+I+ ++P SKLAREYFA FTT+FFAWL+GP EV+ESE  G+REKN+V I KCRFLE+TN
Sbjct: 121 SVIRRVMPPSKLAREYFAVFTTIFFAWLLGPSEVRESEINGRREKNIVHIKKCRFLEETN 180

Query: 181 CAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL 240
           C GMCINLCK P Q FIKDS GMPV MVPNFDDMSCEMIFG+EPPAS DDPALKQPCYKL
Sbjct: 181 CVGMCINLCKMPSQLFIKDSFGMPVNMVPNFDDMSCEMIFGQEPPASTDDPALKQPCYKL 239

[Close]
BLAST of Cucsa.016410 vs. NCBI nr
Match: gi|470108690|ref|XP_004290643.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 313.9 bits (803), Expect = 2.4e-82
Identity = 156/238 (65.55%), Postives = 186/238 (78.15%), Query Frame = 1 

Query: 13  LPTMMNNNKMKLRRKSILCFGVLTRPAEGELIEETR----------KTNTVYTDNWFDKI 72
           LP   + +  KLRR SI+   VL+ PA+   IE  +          +  +VY DNWFDK+
Sbjct: 16  LPHHRHVHAHKLRRSSIVA--VLSTPADVINIEADKSRIRPADGAAEKKSVYNDNWFDKL 75

Query: 73  AIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPILSL 132
           AIDHLSQ VQA SG R++KSG+ESLVE  + AS NFN  KQ+E+V+QAL  AFP+PILSL
Sbjct: 76  AIDHLSQNVQAASGLRNRKSGFESLVEAASAASLNFNPEKQREIVVQALEGAFPRPILSL 135

Query: 133 IKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTNCA 192
           IKALLP+SKLAREYFA FTT+FFAWLVGPCEV+ESEF G +EKNVV I KCRFLE+TNC 
Sbjct: 136 IKALLPESKLAREYFAVFTTIFFAWLVGPCEVRESEFNGSKEKNVVHIPKCRFLEETNCV 195

Query: 193 GMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL 241
           GMCIN+CK P Q FIKD++GMPV MVPNFDDMSC+MIFG+EPP  ++DPALKQPC+KL
Sbjct: 196 GMCINMCKMPSQSFIKDTMGMPVNMVPNFDDMSCQMIFGEEPPELLNDPALKQPCFKL 251

[Close]
BLAST of Cucsa.016410 vs. NCBI nr
Match: gi|502115213|ref|XP_004495151.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic-like [Cicer arietinum])

HSP 1 Score: 304.7 bits (779), Expect = 1.5e-79
Identity = 147/240 (61.25%), Postives = 183/240 (76.25%), Query Frame = 1 

Query: 1   MDLRVIQDTRVILPTMMNNNKMKLRRKSILCFGVLTRPAEGELIEETRKTNTVYTDNWFD 60
           MD ++I       PT+ ++    ++ K     GVL RP++  + EET K   VY DNWFD
Sbjct: 1   MDAKMISHKINPTPTIAHSKPRLIKPKQNFVVGVLARPSDN-IGEETLKKTNVYKDNWFD 60

Query: 61  KIAIDHLSQAVQATSGWRSKKSGYESLVEVTTMASRNFNHIKQKEVVIQALGMAFPKPIL 120
           K+AI+HLS++VQA +G  + KSG++SLVE  T+AS+ F+ ++Q EVV++AL  AFP+PIL
Sbjct: 61  KLAINHLSKSVQAATGISNNKSGFDSLVEAATVASQKFSSVQQHEVVLEALDRAFPRPIL 120

Query: 121 SLIKALLPQSKLAREYFAAFTTVFFAWLVGPCEVKESEFKGKREKNVVQIHKCRFLEQTN 180
           S+I+ ++P SKLAREYFA FTT+FFAWL+GP EV+ESE  GKREKN+V I KCRFLE+TN
Sbjct: 121 SMIRKVMPPSKLAREYFAVFTTLFFAWLLGPSEVRESEVDGKREKNIVYIKKCRFLEETN 180

Query: 181 CAGMCINLCKFPCQDFIKDSLGMPVTMVPNFDDMSCEMIFGKEPPASIDDPALKQPCYKL 240
           C GMCINLCK P Q FIKDS GMPV MVPNFDDMSCEMIFG+EPP S  DPAL QPCYKL
Sbjct: 181 CVGMCINLCKMPSQMFIKDSFGMPVNMVPNFDDMSCEMIFGQEPPLSTHDPALNQPCYKL 239

The following BLAST results are available for this feature:
BLAST of Cucsa.016410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
D27_ORYSJ1.1e-6663.30Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica GN=D2... [more]
D27_ARATH5.0e-5647.88Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 S... [more]
BLAST of Cucsa.016410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIR1_CUCSA5.8e-136100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G226860 PE=4 SV=1[more]
R4HZ96_MEDTR4.4e-8362.08Beta-carotene isomerase D27 OS=Medicago truncatula GN=MTR_1g471050 PE=4 SV=1[more]
M5VKD0_PRUPE7.3e-7863.09Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019954mg PE=4 S... [more]
F6HBJ4_VITVI9.5e-7867.44Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0179g00330 PE=4 SV=... [more]
A0A0B2PSH0_GLYSO9.5e-7870.39Uncharacterized protein OS=Glycine soja GN=glysoja_019129 PE=4 SV=1[more]
BLAST of Cucsa.016410 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03055.12.8e-5747.88 unknown protein[more]
AT1G64680.11.9e-3746.10 unknown protein[more]
AT4G01995.11.9e-2436.69 unknown protein[more]
BLAST of Cucsa.016410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455260|ref|XP_004145371.1|8.4e-136100.00PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus][more]
gi|659096928|ref|XP_008449360.1|2.2e-12895.00PREDICTED: LOW QUALITY PROTEIN: beta-carotene isomerase D27, chloroplastic [Cucu... [more]
gi|922402901|ref|XP_013468586.1|6.3e-8362.08beta-carotene isomerase D27 [Medicago truncatula][more]
gi|470108690|ref|XP_004290643.1|2.4e-8265.55PREDICTED: beta-carotene isomerase D27, chloroplastic [Fragaria vesca subsp. ves... [more]
gi|502115213|ref|XP_004495151.1|1.5e-7961.25PREDICTED: beta-carotene isomerase D27, chloroplastic-like [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025114DUF4033
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010223 secondary shoot formation
biological_process GO:1901601 strigolactone biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0009536 plastid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.016410.1Cucsa.016410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025114Domain of unknown function DUF4033PFAMPF13225DUF4033coord: 147..226
score: 8.9
NoneNo IPR availablePANTHERPTHR33591FAMILY NOT NAMEDcoord: 15..240
score: 9.5E
NoneNo IPR availablePANTHERPTHR33591:SF3BETA-CAROTENE ISOMERASE D27, CHLOROPLASTICcoord: 15..240
score: 9.5E