Cucsa.010620 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.010620
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RING-H2 finger protein ATL2G, putative
Location	scaffold00154 : 45158 .. 45664 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGCAGCACCGGCGACGCCGCCATTTACAGCCGAAAACTCGACATTTTCCTCATCGCCATCGGCTCCGCCGGCGCCGTCGTCACCATTTACCACTGCATCATGGCTTGTTGGTGTGATCGCCGCCGCTTCCTCTCCGGCGACCAATCGTCGGTTAACGACCCTCACACCTTACCGATAACGGATACGCCGCGGAGCACCGAGAATTCGGTGGTTCATTTGATTCCGGCTCACAAGTATGAGAAGCGAATGGCGGTGGACGGCGGTGGTGGCGGTAAAGACGTGGATGGGGATGGCACGTGCGCGATTTGTTTGAGTGAATTTGAAGAAGGGGAGGAAATAAAGACGTTGCCTGAGTGTAAGCATTCGTATCACATGCCGTGTATCGACATGTGGCTTTACTCTCACTCCAGCTGTCCGATGTGTCGTACTAATGCTACTCCGACGTCGTTTAACGATAGGCTGCAGTTTGAAACGCAGTCCAATTCTGGGATTGTTGTGCAC

mRNA sequence

ATGTCAAGCAGCACCGGCGACGCCGCCATTTACAGCCGAAAACTCGACATTTTCCTCATCGCCATCGGCTCCGCCGGCGCCGTCGTCACCATTTACCACTGCATCATGGCTTGTTGGTGTGATCGCCGCCGCTTCCTCTCCGGCGACCAATCGTCGGTTAACGACCCTCACACCTTACCGATAACGGATACGCCGCGGAGCACCGAGAATTCGGTGGTTCATTTGATTCCGGCTCACAAGTATGAGAAGCGAATGGCGGTGGACGGCGGTGGTGGCGGTAAAGACGTGGATGGGGATGGCACGTGCGCGATTTGTTTGAGTGAATTTGAAGAAGGGGAGGAAATAAAGACGTTGCCTGAGTGTAAGCATTCGTATCACATGCCGTGTATCGACATGTGGCTTTACTCTCACTCCAGCTGTCCGATGTGTCGTACTAATGCTACTCCGACGTCGTTTAACGATAGGCTGCAGTTTGAAACGCAGTCCAATTCTGGGATTGTTGTGCAC

Coding sequence (CDS)

ATGTCAAGCAGCACCGGCGACGCCGCCATTTACAGCCGAAAACTCGACATTTTCCTCATCGCCATCGGCTCCGCCGGCGCCGTCGTCACCATTTACCACTGCATCATGGCTTGTTGGTGTGATCGCCGCCGCTTCCTCTCCGGCGACCAATCGTCGGTTAACGACCCTCACACCTTACCGATAACGGATACGCCGCGGAGCACCGAGAATTCGGTGGTTCATTTGATTCCGGCTCACAAGTATGAGAAGCGAATGGCGGTGGACGGCGGTGGTGGCGGTAAAGACGTGGATGGGGATGGCACGTGCGCGATTTGTTTGAGTGAATTTGAAGAAGGGGAGGAAATAAAGACGTTGCCTGAGTGTAAGCATTCGTATCACATGCCGTGTATCGACATGTGGCTTTACTCTCACTCCAGCTGTCCGATGTGTCGTACTAATGCTACTCCGACGTCGTTTAACGATAGGCTGCAGTTTGAAACGCAGTCCAATTCTGGGATTGTTGTGCAC

Protein sequence

MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLPITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVH

Homology

[Close]

BLAST of Cucsa.010620 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.4e-17
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 1


Query: 17  IFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQS-SVNDPHTLPITDTPRSTEN----- 76
           I LI I ++  ++  Y+ +++ +C R    S  ++ ++N       + T R + N     
Sbjct: 59  IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLN 118

Query: 77  -SVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKHSYHMPC 136
            S++  I  +KY+     DG   G D      C++CLSEFEE E ++ LP+C H++H+PC
Sbjct: 119 ESMIKSITVYKYKSG---DGFVDGSD------CSVCLSEFEENESLRLLPKCNHAFHLPC 178

Query: 137 IDMWLYSHSSCPMCRTNAT 149
           ID WL SHS+CP+CR   T
Sbjct: 179 IDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of Cucsa.010620 vs. Swiss-Prot
Match: ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 6.1e-16
Identity = 49/150 (32.67%), Postives = 79/150 (52.67%), Query Frame = 1


Query: 17  IFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSS-----VNDPHTLPITDT------- 76
           I LI I ++  ++  Y+ +++ +C RRR  S   S+     ++  +T   T+        
Sbjct: 61  IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGAT 120

Query: 77  -PRST---------ENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEE 136
            P  T         + S++  I  +KY K   +DG     D      C++CLSEF+E E 
Sbjct: 121 NPNQTIGGGGGDGLDESLIKSITVYKYRK---MDGFVESSD------CSVCLSEFQENES 180

Query: 137 IKTLPECKHSYHMPCIDMWLYSHSSCPMCR 145
           ++ LP+C H++H+PCID WL SHS+CP+CR
Sbjct: 181 LRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201

[Close]

BLAST of Cucsa.010620 vs. Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.1e-16
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = 1


Query: 27  AVVTIYHCIMACWCD-RRRFLSGDQSSVNDPHTLPIT--------DTPRSTENSVVHLIP 86
           A +T+   ++ C+CD RRR ++   +S       P           T    +  V+  +P
Sbjct: 49  AALTLAFVLLQCYCDERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLP 108

Query: 87  AHKYEKRMAVDGGGGGKDVDGDGT-CAICLSEFEEGEEIKTLPECKHSYHMPCIDMWLYS 145
              Y +  A       ++ D DG  CA+CL+E E+GEE + LP C H +H  C+DMWL S
Sbjct: 109 VTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS 168

[Close]

BLAST of Cucsa.010620 vs. Swiss-Prot
Match: ATL1_ARATH (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = 1


Query: 22  IGSAGAVVTIYHCIMACWCD-------RRRFLSGDQSS--VNDPHTLPITDTPRSTENSV 81
           + +A  +V+ Y  ++ C  +       RRR  S DQ+   +  PH     +  R  + S 
Sbjct: 52  LATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPH-----EVNRGLDESA 111

Query: 82  VHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKHSYHMPCIDM 141
           +  IP  K++KR  V   G          C++CL+EF+E E+++ +P C H +H+ CID+
Sbjct: 112 IRAIPVFKFKKRDVV--AGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDI 171

Query: 142 WLYSHSSCPMCRTNAT 149
           WL  +++CP+CRT+ +
Sbjct: 172 WLQGNANCPLCRTSVS 180

[Close]

BLAST of Cucsa.010620 vs. Swiss-Prot
Match: ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 1


Query: 55  DPHTLPITDTPRSTENSVVHLIPAHKYEKRMAV---DGGGGGKDVDGDGTCAICLSEFEE 114
           D   L   D     + +V++  P   + K  +    DG GGG    GD TC+ICL E++E
Sbjct: 92  DNEDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGG----GDTTCSICLCEYKE 151

Query: 115 GEEIKTLPECKHSYHMPCIDMWLYSHSSCPMCRTNATPT 151
            E ++ +PECKH +H+ C+D WL  + SCP+CR +  PT
Sbjct: 152 AEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPT 186

[Close]

BLAST of Cucsa.010620 vs. TrEMBL
Match: A0A0A0KNT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G512950 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 3.2e-96
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120

Query: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVH 170
           CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVH
Sbjct: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVH 169

[Close]

BLAST of Cucsa.010620 vs. TrEMBL
Match: V4TCG9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033620mg PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.4e-37
Identity = 79/150 (52.67%), Postives = 96/150 (64.00%), Query Frame = 1


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           M  ++ ++ I   K+ + LI +GSA  V+ IYHC    WC R    SG +     P    
Sbjct: 1   MGDNSNNSYIDDNKIAVLLIGVGSAAFVIAIYHCTSVGWCSRG-LRSGPRRRPAGPLVHE 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120
           I  TP S ENS+  LIPAHKY K       G G   D DG CA+CLSEFEEGEE++TLPE
Sbjct: 61  IDATPSSIENSMAQLIPAHKYHK-------GTGPVGDEDGMCAVCLSEFEEGEELRTLPE 120

Query: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPT 151
           C HSYH PCIDMWLYSHS+CPMCR++ATP+
Sbjct: 121 CLHSYHAPCIDMWLYSHSNCPMCRSDATPS 142

[Close]

BLAST of Cucsa.010620 vs. TrEMBL
Match: A0A061FMC0_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_042790 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.7e-36
Identity = 83/164 (50.61%), Postives = 99/164 (60.37%), Query Frame = 1


Query: 7   DAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVND--PHTLPI-TD 66
           D  + + KL + L+ IGSA  VVTIYHCI   WC R   +   Q +      H+    T 
Sbjct: 5   DFGLENTKLSVILVGIGSAALVVTIYHCIAMGWCRRHTQIPRPQQAQRQLPQHSFRHETS 64

Query: 67  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKH 126
              S+E S   LIPAHKY+K M +        VD DG CA+CLS+FEEGEE++TLPEC H
Sbjct: 65  AVPSSEISAAQLIPAHKYQKGMGL--------VDDDGMCAVCLSQFEEGEELRTLPECLH 124

Query: 127 SYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIV 168
           SYH PCIDMWLYSHSSCPMCRT+ATP            S+SG V
Sbjct: 125 SYHAPCIDMWLYSHSSCPMCRTDATPFPSPQIFHHRPDSDSGSV 160

[Close]

BLAST of Cucsa.010620 vs. TrEMBL
Match: B9T223_RICCO (RING-H2 finger protein ATL2G, putative OS=Ricinus communis GN=RCOM_0996510 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.1e-35
Identity = 77/148 (52.03%), Postives = 98/148 (66.22%), Query Frame = 1


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           MS+ + D    S K+   LI +GSA  VVTIYHC+   WC+R R  +  Q    D +++ 
Sbjct: 1   MSTMSNDGDDISNKVTALLIGVGSAALVVTIYHCLATGWCNRDRARANAQRLHQDSNSII 60

Query: 61  I-TDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLP 120
           I  +TP S ENS   LIPA KY+K M    G GG++     TC ICLSEFEEGEE+++LP
Sbjct: 61  IGRETPSSIENSAARLIPAFKYQKGM----GSGGEEA----TCPICLSEFEEGEEVRSLP 120

Query: 121 ECKHSYHMPCIDMWLYSHSSCPMCRTNA 148
           EC HSYH+PCIDMWL SHS+CP+CR +A
Sbjct: 121 ECMHSYHLPCIDMWLCSHSNCPVCRADA 140

[Close]

BLAST of Cucsa.010620 vs. TrEMBL
Match: A0A0D2UY13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G256700 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.6e-34
Identity = 83/169 (49.11%), Postives = 99/169 (58.58%), Query Frame = 1


Query: 10  IYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVN-DPHTLPITDTPR-- 69
           + + +L + L+  GSA  V+TIYHCI   WC   R   G  S    D H L      R  
Sbjct: 9   LQNTRLSVILVGFGSAALVITIYHCIAMGWCHHFRNNRGQTSQPQRDHHHLHHQQQQRVY 68

Query: 70  --------STENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTL 129
                   S ENS   LIPAHKY+K M +        VD DG C++CLS+FEEGEE++TL
Sbjct: 69  GHEMLEIMSFENSTAELIPAHKYQKGMGL--------VDEDGMCSVCLSQFEEGEELRTL 128

Query: 130 PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIV 168
           PEC HSYH PCIDMWLYSHSSCPMCRT+ATP      L    +S+SG V
Sbjct: 129 PECLHSYHAPCIDMWLYSHSSCPMCRTDATPLPQISHL----RSDSGFV 165

[Close]

BLAST of Cucsa.010620 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 88.2 bits (217), Expect = 5.3e-18
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 1


Query: 17  IFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQS-SVNDPHTLPITDTPRSTEN----- 76
           I LI I ++  ++  Y+ +++ +C R    S  ++ ++N       + T R + N     
Sbjct: 59  IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLN 118

Query: 77  -SVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKHSYHMPC 136
            S++  I  +KY+     DG   G D      C++CLSEFEE E ++ LP+C H++H+PC
Sbjct: 119 ESMIKSITVYKYKSG---DGFVDGSD------CSVCLSEFEENESLRLLPKCNHAFHLPC 178

Query: 137 IDMWLYSHSSCPMCRTNAT 149
           ID WL SHS+CP+CR   T
Sbjct: 179 IDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of Cucsa.010620 vs. TAIR10
Match: AT3G03550.1 (AT3G03550.1 RING/U-box superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-17
Identity = 49/150 (32.67%), Postives = 79/150 (52.67%), Query Frame = 1


Query: 17  IFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSS-----VNDPHTLPITDT------- 76
           I LI I ++  ++  Y+ +++ +C RRR  S   S+     ++  +T   T+        
Sbjct: 61  IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGAT 120

Query: 77  -PRST---------ENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEE 136
            P  T         + S++  I  +KY K   +DG     D      C++CLSEF+E E 
Sbjct: 121 NPNQTIGGGGGDGLDESLIKSITVYKYRK---MDGFVESSD------CSVCLSEFQENES 180

Query: 137 IKTLPECKHSYHMPCIDMWLYSHSSCPMCR 145
           ++ LP+C H++H+PCID WL SHS+CP+CR
Sbjct: 181 LRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201

[Close]

BLAST of Cucsa.010620 vs. TAIR10
Match: AT1G04360.1 (AT1G04360.1 RING/U-box superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 6.5e-16
Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = 1


Query: 22  IGSAGAVVTIYHCIMACWCD-------RRRFLSGDQSS--VNDPHTLPITDTPRSTENSV 81
           + +A  +V+ Y  ++ C  +       RRR  S DQ+   +  PH     +  R  + S 
Sbjct: 52  LATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPH-----EVNRGLDESA 111

Query: 82  VHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKHSYHMPCIDM 141
           +  IP  K++KR  V   G          C++CL+EF+E E+++ +P C H +H+ CID+
Sbjct: 112 IRAIPVFKFKKRDVV--AGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDI 171

Query: 142 WLYSHSSCPMCRTNAT 149
           WL  +++CP+CRT+ +
Sbjct: 172 WLQGNANCPLCRTSVS 180

[Close]

BLAST of Cucsa.010620 vs. TAIR10
Match: AT2G46160.1 (AT2G46160.1 RING/U-box superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 8.4e-16
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 1


Query: 55  DPHTLPITDTPRSTENSVVHLIPAHKYEKRMAV---DGGGGGKDVDGDGTCAICLSEFEE 114
           D   L   D     + +V++  P   + K  +    DG GGG    GD TC+ICL E++E
Sbjct: 92  DNEDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGG----GDTTCSICLCEYKE 151

Query: 115 GEEIKTLPECKHSYHMPCIDMWLYSHSSCPMCRTNATPT 151
            E ++ +PECKH +H+ C+D WL  + SCP+CR +  PT
Sbjct: 152 AEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPT 186

[Close]

BLAST of Cucsa.010620 vs. TAIR10
Match: AT5G43420.1 (AT5G43420.1 RING/U-box superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-15
Identity = 39/110 (35.45%), Postives = 69/110 (62.73%), Query Frame = 1


Query: 66  RSTENSVVHLIPAHKYEKRMAVDGG---GGGKDVDGDGT--CAICLSEFEEGEEIKTLPE 125
           R  + SV+  IP  K++KR   + G   G G++ +   +  C++CLSEF++ E+++ +P 
Sbjct: 97  RGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPN 156

Query: 126 CKHSYHMPCIDMWLYSHSSCPMCRTNAT-PTSF-NDRLQFETQSNSGIVV 169
           C H +H+ CID+WL ++++CP+CRT  +  TSF  DR+   + S   +V+
Sbjct: 157 CSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPENLVM 206

[Close]

BLAST of Cucsa.010620 vs. NCBI nr
Match: gi|449450157|ref|XP_004142830.1| (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 4.6e-96
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120

Query: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVH 170
           CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVH
Sbjct: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVH 169

[Close]

BLAST of Cucsa.010620 vs. NCBI nr
Match: gi|659118063|ref|XP_008458935.1| (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo])

HSP 1 Score: 347.4 bits (890), Expect = 1.4e-92
Identity = 165/171 (96.49%), Postives = 166/171 (97.08%), Query Frame = 1


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRF SGDQSS NDPHTLP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGG--GKDVDGDGTCAICLSEFEEGEEIKTL 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGG  GKDVDGDGTCAICLSEFEEGEEIKTL
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTL 120

Query: 121 PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVH 170
           PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQF+TQ NSGIVVH
Sbjct: 121 PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVH 171

[Close]

BLAST of Cucsa.010620 vs. NCBI nr
Match: gi|567886986|ref|XP_006436015.1| (hypothetical protein CICLE_v10033620mg [Citrus clementina])

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-36
Identity = 79/150 (52.67%), Postives = 96/150 (64.00%), Query Frame = 1


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           M  ++ ++ I   K+ + LI +GSA  V+ IYHC    WC R    SG +     P    
Sbjct: 1   MGDNSNNSYIDDNKIAVLLIGVGSAAFVIAIYHCTSVGWCSRG-LRSGPRRRPAGPLVHE 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120
           I  TP S ENS+  LIPAHKY K       G G   D DG CA+CLSEFEEGEE++TLPE
Sbjct: 61  IDATPSSIENSMAQLIPAHKYHK-------GTGPVGDEDGMCAVCLSEFEEGEELRTLPE 120

Query: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPT 151
           C HSYH PCIDMWLYSHS+CPMCR++ATP+
Sbjct: 121 CLHSYHAPCIDMWLYSHSNCPMCRSDATPS 142

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BLAST of Cucsa.010620 vs. NCBI nr
Match: gi|590563421|ref|XP_007009366.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 159.5 bits (402), Expect = 5.3e-36
Identity = 83/164 (50.61%), Postives = 99/164 (60.37%), Query Frame = 1


Query: 7   DAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVND--PHTLPI-TD 66
           D  + + KL + L+ IGSA  VVTIYHCI   WC R   +   Q +      H+    T 
Sbjct: 5   DFGLENTKLSVILVGIGSAALVVTIYHCIAMGWCRRHTQIPRPQQAQRQLPQHSFRHETS 64

Query: 67  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKH 126
              S+E S   LIPAHKY+K M +        VD DG CA+CLS+FEEGEE++TLPEC H
Sbjct: 65  AVPSSEISAAQLIPAHKYQKGMGL--------VDDDGMCAVCLSQFEEGEELRTLPECLH 124

Query: 127 SYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIV 168
           SYH PCIDMWLYSHSSCPMCRT+ATP            S+SG V
Sbjct: 125 SYHAPCIDMWLYSHSSCPMCRTDATPFPSPQIFHHRPDSDSGSV 160

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BLAST of Cucsa.010620 vs. NCBI nr
Match: gi|223527994|gb|EEF30076.1| (RING-H2 finger protein ATL2G precursor, putative [Ricinus communis])

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 77/148 (52.03%), Postives = 98/148 (66.22%), Query Frame = 1


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           MS+ + D    S K+   LI +GSA  VVTIYHC+   WC+R R  +  Q    D +++ 
Sbjct: 1   MSTMSNDGDDISNKVTALLIGVGSAALVVTIYHCLATGWCNRDRARANAQRLHQDSNSII 60

Query: 61  I-TDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLP 120
           I  +TP S ENS   LIPA KY+K M    G GG++     TC ICLSEFEEGEE+++LP
Sbjct: 61  IGRETPSSIENSAARLIPAFKYQKGM----GSGGEEA----TCPICLSEFEEGEEVRSLP 120

Query: 121 ECKHSYHMPCIDMWLYSHSSCPMCRTNA 148
           EC HSYH+PCIDMWL SHS+CP+CR +A
Sbjct: 121 ECMHSYHLPCIDMWLCSHSNCPVCRADA 140

The following BLAST results are available for this feature:

BLAST of Cucsa.010620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL52_ARATH	9.4e-17	34.53	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1	[more]
ATL51_ARATH	6.1e-16	32.67	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2	[more]
EL5_ORYSJ	6.1e-16	34.38	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV...	[more]
ATL1_ARATH	1.1e-14	30.88	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1	[more]
ATL67_ARATH	1.5e-14	38.38	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1	[more]

BLAST of Cucsa.010620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNT5_CUCSA	3.2e-96	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G512950 PE=4 SV=1	[more]
V4TCG9_9ROSI	7.4e-37	52.67	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033620mg PE=4 SV=1	[more]
A0A061FMC0_THECC	3.7e-36	50.61	RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_042790 PE=4 S...	[more]
B9T223_RICCO	9.1e-35	52.03	RING-H2 finger protein ATL2G, putative OS=Ricinus communis GN=RCOM_0996510 PE=4 ...	[more]
A0A0D2UY13_GOSRA	1.6e-34	49.11	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G256700 PE=4 SV=1	[more]

BLAST of Cucsa.010620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17600.1	5.3e-18	34.53	RING/U-box superfamily protein	[more]
AT3G03550.1	3.4e-17	32.67	RING/U-box superfamily protein	[more]
AT1G04360.1	6.5e-16	30.88	RING/U-box superfamily protein	[more]
AT2G46160.1	8.4e-16	38.38	RING/U-box superfamily protein	[more]
AT5G43420.1	1.4e-15	35.45	RING/U-box superfamily protein	[more]

BLAST of Cucsa.010620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450157\|ref\|XP_004142830.1\|	4.6e-96	100.00	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis sativus]	[more]
gi\|659118063\|ref\|XP_008458935.1\|	1.4e-92	96.49	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo]	[more]
gi\|567886986\|ref\|XP_006436015.1\|	1.1e-36	52.67	hypothetical protein CICLE_v10033620mg [Citrus clementina]	[more]
gi\|590563421\|ref\|XP_007009366.1\|	5.3e-36	50.61	RING/U-box superfamily protein, putative [Theobroma cacao]	[more]
gi\|223527994\|gb\|EEF30076.1\|	1.3e-34	52.03	RING-H2 finger protein ATL2G precursor, putative [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.010620.1	Cucsa.010620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..144 score: 2.4
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 102..143 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 102..144 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 97..146 score: 3.3
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 1..169 score: 1.3
None	No IPR available	PANTHER	PTHR14155:SF144	SUBFAMILY NOT NAMED	coord: 1..169 score: 1.3
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 101..149 score: 5.55

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.010620	Cla004681	Watermelon (97103) v1	cgywmB359
Cucsa.010620	Csa5G512950	Cucumber (Chinese Long) v2	cgycuB286
Cucsa.010620	MELO3C021656	Melon (DHL92) v3.5.1	cgymeB336
Cucsa.010620	ClCG09G019980	Watermelon (Charleston Gray)	cgywcgB338
Cucsa.010620	CSPI05G17550	Wild cucumber (PI 183967)	cgycpiB296
Cucsa.010620	CmoCh15G004120	Cucurbita moschata (Rifu)	cgycmoB0543
Cucsa.010620	Lsi02G016550	Bottle gourd (USVL1VR-Ls)	cgylsiB318
Cucsa.010620	Cp4.1LG13g09380	Cucurbita pepo (Zucchini)	cgycpeB0519
Cucsa.010620	MELO3C021656.2	Melon (DHL92) v3.6.1	cgymedB331
Cucsa.010620	CsaV3_5G026480	Cucumber (Chinese Long) v3	cgycucB300
Cucsa.010620	Cla97C02G046440	Watermelon (97103) v2	cgywmbB347
Cucsa.010620	Cla97C09G181390	Watermelon (97103) v2	cgywmbB348
Cucsa.010620	Bhi06G000626	Wax gourd	cgywgoB389
Cucsa.010620	Carg02356	Silver-seed gourd	carcgyB0315

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.010620	Silver-seed gourd	carcgyB0766
Cucsa.010620	Cucurbita maxima (Rimu)	cgycmaB0542
Cucsa.010620	Cucurbita maxima (Rimu)	cgycmaB0543
Cucsa.010620	Cucurbita moschata (Rifu)	cgycmoB0544
Cucsa.010620	Cucurbita pepo (Zucchini)	cgycpeB0522