CmoCh15G004120 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G004120
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ring finger protein, putative
Location	Cmo_Chr15 : 1873321 .. 1873833 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCCAGCGACGCCGCCGTTTACAGCCAAAAACTCGACATCTTCCTCATTGCCGTCGGCTCCGCCGGCGCTGTCGTCACCATTTATCACTGCATCATGGCTTGTTGGTGTGACCGCCGCCGCCTCAACGCTGGCGACCAAACACCAGCGAACGACCTACACTCTATGTCGCTGGCGGAGACGCCACGGAGCACCGAGAATTCGGTCGTTCATTTGATTCCGGCTCACAAGTATGAGAAGCAAAAGGCGGTGGACAGCGGCGGATGCGATGGCGATGGCACGTGCGCCATCTGTTTGAGCGAGTTCGAGGAGGGGGAGGAAATAAGAACGTTGCCCGAGTGTCTGCATTCGTATCACGTGCCGTGTATCGACATGTGGCTTTACTCTCACTCAAGTTGTCCGATGTGTCGTACTGATGCTACTCCGACGTCGGTTCATGACAGGCTGCAGTTTGAGACGCAGCCGAGTTCTGGGATTATTGTGCACGTGCGGCCCACGAGGAATGAGTAA

mRNA sequence

ATGTCATCCAGCGACGCCGCCGTTTACAGCCAAAAACTCGACATCTTCCTCATTGCCGTCGGCTCCGCCGGCGCTGTCGTCACCATTTATCACTGCATCATGGCTTGTTGGTGTGACCGCCGCCGCCTCAACGCTGGCGACCAAACACCAGCGAACGACCTACACTCTATGTCGCTGGCGGAGACGCCACGGAGCACCGAGAATTCGGTCGTTCATTTGATTCCGGCTCACAAGTATGAGAAGCAAAAGGCGGTGGACAGCGGCGGATGCGATGGCGATGGCACGTGCGCCATCTGTTTGAGCGAGTTCGAGGAGGGGGAGGAAATAAGAACGTTGCCCGAGTGTCTGCATTCGTATCACGTGCCGTGTATCGACATGTGGCTTTACTCTCACTCAAGTTGTCCGATGTGTCGTACTGATGCTACTCCGACGTCGGTTCATGACAGGCTGCAGTTTGAGACGCAGCCGAGTTCTGGGATTATTGTGCACGTGCGGCCCACGAGGAATGAGTAA

Coding sequence (CDS)

ATGTCATCCAGCGACGCCGCCGTTTACAGCCAAAAACTCGACATCTTCCTCATTGCCGTCGGCTCCGCCGGCGCTGTCGTCACCATTTATCACTGCATCATGGCTTGTTGGTGTGACCGCCGCCGCCTCAACGCTGGCGACCAAACACCAGCGAACGACCTACACTCTATGTCGCTGGCGGAGACGCCACGGAGCACCGAGAATTCGGTCGTTCATTTGATTCCGGCTCACAAGTATGAGAAGCAAAAGGCGGTGGACAGCGGCGGATGCGATGGCGATGGCACGTGCGCCATCTGTTTGAGCGAGTTCGAGGAGGGGGAGGAAATAAGAACGTTGCCCGAGTGTCTGCATTCGTATCACGTGCCGTGTATCGACATGTGGCTTTACTCTCACTCAAGTTGTCCGATGTGTCGTACTGATGCTACTCCGACGTCGGTTCATGACAGGCTGCAGTTTGAGACGCAGCCGAGTTCTGGGATTATTGTGCACGTGCGGCCCACGAGGAATGAGTAA

Homology

[Close]

BLAST of CmoCh15G004120 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = 1


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQT-PANDLHSMSLA 61
           SSS ++ +S  L I LI + ++  ++  Y+ +++ +C R    +  +T   N       +
Sbjct: 47  SSSSSSSFSPLL-IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFS 106

Query: 62  ETPRSTEN------SVVHLIPAHKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPE 121
            T R + N      S++  I  +KY+       G  DG   C++CLSEFEE E +R LP+
Sbjct: 107 STQRISTNGDGLNESMIKSITVYKYKS----GDGFVDGSD-CSVCLSEFEENESLRLLPK 166

Query: 122 CLHSYHVPCIDMWLYSHSSCPMCRTDAT 143
           C H++H+PCID WL SHS+CP+CR   T
Sbjct: 167 CNHAFHLPCIDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of CmoCh15G004120 vs. Swiss-Prot
Match: ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 4.2e-17
Identity = 56/177 (31.64%), Postives = 87/177 (49.15%), Query Frame = 1


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           SSSD +     L I LI + ++  ++  Y+ +++ +C RRR N+   T A  ++ +S   
Sbjct: 52  SSSDFS----PLLIALIGILASAFILVSYYTLISKYCHRRRHNSSS-TSAAAINRISSDY 111

Query: 62  TPRSTEN-----------------------SVVHLIPAHKYEKQKAVDSGGCDGDGTCAI 121
           T + T N                       S++  I  +KY K       G      C++
Sbjct: 112 TWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMD-----GFVESSDCSV 171

Query: 122 CLSEFEEGEEIRTLPECLHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQ 156
           CLSEF+E E +R LP+C H++HVPCID WL SHS+CP+CR     +S  + +    Q
Sbjct: 172 CLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQ 218

[Close]

BLAST of CmoCh15G004120 vs. Swiss-Prot
Match: ATL1_ARATH (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-16
Identity = 42/132 (31.82%), Postives = 71/132 (53.79%), Query Frame = 1


Query: 20  VGSAGAVVTIYHCIMACWCD-------RRRLNAGDQTPANDLHSMSLAETPRSTENSVVH 79
           + +A  +V+ Y  ++ C  +       RRR  + DQ P   L   S  E  R  + S + 
Sbjct: 52  LATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNP---LMIYSPHEVNRGLDESAIR 111

Query: 80  LIPAHKYEKQKAV--DSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYHVPCIDMWLYS 139
            IP  K++K+  V  +         C++CL+EF+E E++R +P C H +H+ CID+WL  
Sbjct: 112 AIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQG 171

Query: 140 HSSCPMCRTDAT 143
           +++CP+CRT  +
Sbjct: 172 NANCPLCRTSVS 180

[Close]

BLAST of CmoCh15G004120 vs. Swiss-Prot
Match: ATL44_ARATH (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.7e-16
Identity = 54/143 (37.76%), Postives = 65/143 (45.45%), Query Frame = 1


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           + SD  V    L   LI V    AVV         W  R        +P   L   +L  
Sbjct: 24  AESDMVVILSALLCALICVAGLAAVVR------CAWLRRFTAGGDSPSPNKGLKKKALQS 83

Query: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGGCDGDGT-CAICLSEFEEGEEIRTLPECLHSYH 121
            PRST  +            +    +   +GD T CAICL++F +GEEIR LP C HS+H
Sbjct: 84  LPRSTFTAA-----------ESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFH 143

Query: 122 VPCIDMWLYSHSSCPMCRTDATP 144
           V CID WL S SSCP CR   TP
Sbjct: 144 VECIDKWLVSRSSCPSCRRILTP 149

[Close]

BLAST of CmoCh15G004120 vs. Swiss-Prot
Match: ATL65_ARATH (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-15
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 1


Query: 38  CDRRRL-----NAGDQTPANDLHSMS---------LAETPRSTENSVVHLIPAHKYEK-- 97
           C RRRL      +   T ++DL S S          + +P   ++SV+  +P   Y    
Sbjct: 79  CRRRRLLHLSSASSASTSSSDLRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAA 138

Query: 98  ---QKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYHVPCIDMWLYSHSSCPMCR 140
              + AV          CA+CL EFEEG+ +RTLP C H++H+ CID WL SH +CP+CR
Sbjct: 139 CTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCR 198

[Close]

BLAST of CmoCh15G004120 vs. TrEMBL
Match: A0A0A0KNT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G512950 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.8e-76
Identity = 135/171 (78.95%), Postives = 152/171 (88.89%), Query Frame = 1


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           S+ DAA+YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GDQ+  ND H++ + +
Sbjct: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLPITD 63

Query: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGG----CDGDGTCAICLSEFEEGEEIRTLPECLH 121
           TPRSTENSVVHLIPAHKYEK+ AVD GG     DGDGTCAICLSEFEEGEEI+TLPEC H
Sbjct: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKH 123

Query: 122 SYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTR 169
           SYH+PCIDMWLYSHSSCPMCRT+ATPTS +DRLQFETQ +SGI+VHV PTR
Sbjct: 124 SYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTR 174

[Close]

BLAST of CmoCh15G004120 vs. TrEMBL
Match: A0A061FMC0_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_042790 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.8e-38
Identity = 84/148 (56.76%), Postives = 96/148 (64.86%), Query Frame = 1


Query: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDR-----RRLNAGDQTPANDLH 60
           M  SD  + + KL + L+ +GSA  VVTIYHCI   WC R     R   A  Q P +   
Sbjct: 1   MGESDFGLENTKLSVILVGIGSAALVVTIYHCIAMGWCRRHTQIPRPQQAQRQLPQHSFR 60

Query: 61  SMSLAETPRSTENSVVHLIPAHKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPEC 120
             + A    S+E S   LIPAHKY+K      G  D DG CA+CLS+FEEGEE+RTLPEC
Sbjct: 61  HETSAVP--SSEISAAQLIPAHKYQK----GMGLVDDDGMCAVCLSQFEEGEELRTLPEC 120

Query: 121 LHSYHVPCIDMWLYSHSSCPMCRTDATP 144
           LHSYH PCIDMWLYSHSSCPMCRTDATP
Sbjct: 121 LHSYHAPCIDMWLYSHSSCPMCRTDATP 142

[Close]

BLAST of CmoCh15G004120 vs. TrEMBL
Match: V4TCG9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033620mg PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-37
Identity = 79/143 (55.24%), Postives = 96/143 (67.13%), Query Frame = 1


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           +S+++ +   K+ + LI VGSA  V+ IYHC    WC R   +   + PA  L    +  
Sbjct: 4   NSNNSYIDDNKIAVLLIGVGSAAFVIAIYHCTSVGWCSRGLRSGPRRRPAGPLVH-EIDA 63

Query: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYHV 121
           TP S ENS+  LIPAHKY K         D DG CA+CLSEFEEGEE+RTLPECLHSYH 
Sbjct: 64  TPSSIENSMAQLIPAHKYHKGTGPVG---DEDGMCAVCLSEFEEGEELRTLPECLHSYHA 123

Query: 122 PCIDMWLYSHSSCPMCRTDATPT 145
           PCIDMWLYSHS+CPMCR+DATP+
Sbjct: 124 PCIDMWLYSHSNCPMCRSDATPS 142

[Close]

BLAST of CmoCh15G004120 vs. TrEMBL
Match: A0A0D2UY13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G256700 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-37
Identity = 83/155 (53.55%), Postives = 97/155 (62.58%), Query Frame = 1


Query: 1   MSSSDAA-VYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQT-PANDLHSMS 60
           M   DA  + + +L + L+  GSA  V+TIYHCI   WC   R N G  + P  D H + 
Sbjct: 1   MGDDDAFNLQNTRLSVILVGFGSAALVITIYHCIAMGWCHHFRNNRGQTSQPQRDHHHLH 60

Query: 61  LAETPR----------STENSVVHLIPAHKYEKQKAVDSGGCDGDGTCAICLSEFEEGEE 120
             +  R          S ENS   LIPAHKY+K      G  D DG C++CLS+FEEGEE
Sbjct: 61  HQQQQRVYGHEMLEIMSFENSTAELIPAHKYQK----GMGLVDEDGMCSVCLSQFEEGEE 120

Query: 121 IRTLPECLHSYHVPCIDMWLYSHSSCPMCRTDATP 144
           +RTLPECLHSYH PCIDMWLYSHSSCPMCRTDATP
Sbjct: 121 LRTLPECLHSYHAPCIDMWLYSHSSCPMCRTDATP 151

[Close]

BLAST of CmoCh15G004120 vs. TrEMBL
Match: B9T223_RICCO (RING-H2 finger protein ATL2G, putative OS=Ricinus communis GN=RCOM_0996510 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.8e-37
Identity = 81/145 (55.86%), Postives = 97/145 (66.90%), Query Frame = 1


Query: 3   SSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA-E 62
           S+D    S K+   LI VGSA  VVTIYHC+   WC+R R  A  Q    D +S+ +  E
Sbjct: 5   SNDGDDISNKVTALLIGVGSAALVVTIYHCLATGWCNRDRARANAQRLHQDSNSIIIGRE 64

Query: 63  TPRSTENSVVHLIPAHKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYHV 122
           TP S ENS   LIPA KY  QK + SGG   + TC ICLSEFEEGEE+R+LPEC+HSYH+
Sbjct: 65  TPSSIENSAARLIPAFKY--QKGMGSGG--EEATCPICLSEFEEGEEVRSLPECMHSYHL 124

Query: 123 PCIDMWLYSHSSCPMCRTDATPTSV 147
           PCIDMWL SHS+CP+CR DA    +
Sbjct: 125 PCIDMWLCSHSNCPVCRADAVSNQI 145

[Close]

BLAST of CmoCh15G004120 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-19
Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = 1


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQT-PANDLHSMSLA 61
           SSS ++ +S  L I LI + ++  ++  Y+ +++ +C R    +  +T   N       +
Sbjct: 47  SSSSSSSFSPLL-IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFS 106

Query: 62  ETPRSTEN------SVVHLIPAHKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPE 121
            T R + N      S++  I  +KY+       G  DG   C++CLSEFEE E +R LP+
Sbjct: 107 STQRISTNGDGLNESMIKSITVYKYKS----GDGFVDGSD-CSVCLSEFEENESLRLLPK 166

Query: 122 CLHSYHVPCIDMWLYSHSSCPMCRTDAT 143
           C H++H+PCID WL SHS+CP+CR   T
Sbjct: 167 CNHAFHLPCIDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of CmoCh15G004120 vs. TAIR10
Match: AT3G03550.1 (AT3G03550.1 RING/U-box superfamily protein)

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-18
Identity = 56/177 (31.64%), Postives = 87/177 (49.15%), Query Frame = 1


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           SSSD +     L I LI + ++  ++  Y+ +++ +C RRR N+   T A  ++ +S   
Sbjct: 52  SSSDFS----PLLIALIGILASAFILVSYYTLISKYCHRRRHNSSS-TSAAAINRISSDY 111

Query: 62  TPRSTEN-----------------------SVVHLIPAHKYEKQKAVDSGGCDGDGTCAI 121
           T + T N                       S++  I  +KY K       G      C++
Sbjct: 112 TWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMD-----GFVESSDCSV 171

Query: 122 CLSEFEEGEEIRTLPECLHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQ 156
           CLSEF+E E +R LP+C H++HVPCID WL SHS+CP+CR     +S  + +    Q
Sbjct: 172 CLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQ 218

[Close]

BLAST of CmoCh15G004120 vs. TAIR10
Match: AT1G04360.1 (AT1G04360.1 RING/U-box superfamily protein)

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17
Identity = 42/132 (31.82%), Postives = 71/132 (53.79%), Query Frame = 1


Query: 20  VGSAGAVVTIYHCIMACWCD-------RRRLNAGDQTPANDLHSMSLAETPRSTENSVVH 79
           + +A  +V+ Y  ++ C  +       RRR  + DQ P   L   S  E  R  + S + 
Sbjct: 52  LATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNP---LMIYSPHEVNRGLDESAIR 111

Query: 80  LIPAHKYEKQKAV--DSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYHVPCIDMWLYS 139
            IP  K++K+  V  +         C++CL+EF+E E++R +P C H +H+ CID+WL  
Sbjct: 112 AIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQG 171

Query: 140 HSSCPMCRTDAT 143
           +++CP+CRT  +
Sbjct: 172 NANCPLCRTSVS 180

[Close]

BLAST of CmoCh15G004120 vs. TAIR10
Match: AT2G17450.1 (AT2G17450.1 RING-H2 finger A3A)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-17
Identity = 54/143 (37.76%), Postives = 65/143 (45.45%), Query Frame = 1


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           + SD  V    L   LI V    AVV         W  R        +P   L   +L  
Sbjct: 24  AESDMVVILSALLCALICVAGLAAVVR------CAWLRRFTAGGDSPSPNKGLKKKALQS 83

Query: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGGCDGDGT-CAICLSEFEEGEEIRTLPECLHSYH 121
            PRST  +            +    +   +GD T CAICL++F +GEEIR LP C HS+H
Sbjct: 84  LPRSTFTAA-----------ESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFH 143

Query: 122 VPCIDMWLYSHSSCPMCRTDATP 144
           V CID WL S SSCP CR   TP
Sbjct: 144 VECIDKWLVSRSSCPSCRRILTP 149

[Close]

BLAST of CmoCh15G004120 vs. TAIR10
Match: AT3G18930.1 (AT3G18930.1 RING/U-box superfamily protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 1


Query: 38  CDRRRL-----NAGDQTPANDLHSMS---------LAETPRSTENSVVHLIPAHKYEK-- 97
           C RRRL      +   T ++DL S S          + +P   ++SV+  +P   Y    
Sbjct: 79  CRRRRLLHLSSASSASTSSSDLRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAA 138

Query: 98  ---QKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYHVPCIDMWLYSHSSCPMCR 140
              + AV          CA+CL EFEEG+ +RTLP C H++H+ CID WL SH +CP+CR
Sbjct: 139 CTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCR 198

[Close]

BLAST of CmoCh15G004120 vs. NCBI nr
Match: gi|659118063|ref|XP_008458935.1| (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 2.8e-77
Identity = 136/173 (78.61%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           S+ DAA+YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GDQ+ AND H++ + +
Sbjct: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLPITD 63

Query: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGG------CDGDGTCAICLSEFEEGEEIRTLPEC 121
           TPRSTENSVVHLIPAHKYEK+ AVD GG       DGDGTCAICLSEFEEGEEI+TLPEC
Sbjct: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTLPEC 123

Query: 122 LHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTR 169
            HSYH+PCIDMWLYSHSSCPMCRT+ATPTS +DRLQF+TQP+SGI+VHV PTR
Sbjct: 124 KHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTR 176

[Close]

BLAST of CmoCh15G004120 vs. NCBI nr
Match: gi|449450157|ref|XP_004142830.1| (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 4.0e-76
Identity = 135/171 (78.95%), Postives = 152/171 (88.89%), Query Frame = 1


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           S+ DAA+YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GDQ+  ND H++ + +
Sbjct: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLPITD 63

Query: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGG----CDGDGTCAICLSEFEEGEEIRTLPECLH 121
           TPRSTENSVVHLIPAHKYEK+ AVD GG     DGDGTCAICLSEFEEGEEI+TLPEC H
Sbjct: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKH 123

Query: 122 SYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTR 169
           SYH+PCIDMWLYSHSSCPMCRT+ATPTS +DRLQFETQ +SGI+VHV PTR
Sbjct: 124 SYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTR 174

[Close]

BLAST of CmoCh15G004120 vs. NCBI nr
Match: gi|590563421|ref|XP_007009366.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 165.2 bits (417), Expect = 9.7e-38
Identity = 84/148 (56.76%), Postives = 96/148 (64.86%), Query Frame = 1


Query: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDR-----RRLNAGDQTPANDLH 60
           M  SD  + + KL + L+ +GSA  VVTIYHCI   WC R     R   A  Q P +   
Sbjct: 1   MGESDFGLENTKLSVILVGIGSAALVVTIYHCIAMGWCRRHTQIPRPQQAQRQLPQHSFR 60

Query: 61  SMSLAETPRSTENSVVHLIPAHKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPEC 120
             + A    S+E S   LIPAHKY+K      G  D DG CA+CLS+FEEGEE+RTLPEC
Sbjct: 61  HETSAVP--SSEISAAQLIPAHKYQK----GMGLVDDDGMCAVCLSQFEEGEELRTLPEC 120

Query: 121 LHSYHVPCIDMWLYSHSSCPMCRTDATP 144
           LHSYH PCIDMWLYSHSSCPMCRTDATP
Sbjct: 121 LHSYHAPCIDMWLYSHSSCPMCRTDATP 142

[Close]

BLAST of CmoCh15G004120 vs. NCBI nr
Match: gi|567886986|ref|XP_006436015.1| (hypothetical protein CICLE_v10033620mg [Citrus clementina])

HSP 1 Score: 164.5 bits (415), Expect = 1.7e-37
Identity = 79/143 (55.24%), Postives = 96/143 (67.13%), Query Frame = 1


Query: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61
           +S+++ +   K+ + LI VGSA  V+ IYHC    WC R   +   + PA  L    +  
Sbjct: 4   NSNNSYIDDNKIAVLLIGVGSAAFVIAIYHCTSVGWCSRGLRSGPRRRPAGPLVH-EIDA 63

Query: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGGCDGDGTCAICLSEFEEGEEIRTLPECLHSYHV 121
           TP S ENS+  LIPAHKY K         D DG CA+CLSEFEEGEE+RTLPECLHSYH 
Sbjct: 64  TPSSIENSMAQLIPAHKYHKGTGPVG---DEDGMCAVCLSEFEEGEELRTLPECLHSYHA 123

Query: 122 PCIDMWLYSHSSCPMCRTDATPT 145
           PCIDMWLYSHS+CPMCR+DATP+
Sbjct: 124 PCIDMWLYSHSNCPMCRSDATPS 142

[Close]

BLAST of CmoCh15G004120 vs. NCBI nr
Match: gi|823242859|ref|XP_012454094.1| (PREDICTED: RING-H2 finger protein ATL52-like [Gossypium raimondii])

HSP 1 Score: 162.9 bits (411), Expect = 4.8e-37
Identity = 83/155 (53.55%), Postives = 97/155 (62.58%), Query Frame = 1


Query: 1   MSSSDAA-VYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQT-PANDLHSMS 60
           M   DA  + + +L + L+  GSA  V+TIYHCI   WC   R N G  + P  D H + 
Sbjct: 1   MGDDDAFNLQNTRLSVILVGFGSAALVITIYHCIAMGWCHHFRNNRGQTSQPQRDHHHLH 60

Query: 61  LAETPR----------STENSVVHLIPAHKYEKQKAVDSGGCDGDGTCAICLSEFEEGEE 120
             +  R          S ENS   LIPAHKY+K      G  D DG C++CLS+FEEGEE
Sbjct: 61  HQQQQRVYGHEMLEIMSFENSTAELIPAHKYQK----GMGLVDEDGMCSVCLSQFEEGEE 120

Query: 121 IRTLPECLHSYHVPCIDMWLYSHSSCPMCRTDATP 144
           +RTLPECLHSYH PCIDMWLYSHSSCPMCRTDATP
Sbjct: 121 LRTLPECLHSYHAPCIDMWLYSHSSCPMCRTDATP 151

The following BLAST results are available for this feature:

BLAST of CmoCh15G004120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL52_ARATH	1.5e-17	35.14	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1	[more]
ATL51_ARATH	4.2e-17	31.64	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2	[more]
ATL1_ARATH	3.6e-16	31.82	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1	[more]
ATL44_ARATH	4.7e-16	37.76	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2...	[more]
ATL65_ARATH	2.3e-15	37.19	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2	[more]

BLAST of CmoCh15G004120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNT5_CUCSA	2.8e-76	78.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G512950 PE=4 SV=1	[more]
A0A061FMC0_THECC	6.8e-38	56.76	RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_042790 PE=4 S...	[more]
V4TCG9_9ROSI	1.2e-37	55.24	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033620mg PE=4 SV=1	[more]
A0A0D2UY13_GOSRA	3.4e-37	53.55	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G256700 PE=4 SV=1	[more]
B9T223_RICCO	9.8e-37	55.86	RING-H2 finger protein ATL2G, putative OS=Ricinus communis GN=RCOM_0996510 PE=4 ...	[more]

BLAST of CmoCh15G004120 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17600.1	8.2e-19	35.14	RING/U-box superfamily protein	[more]
AT3G03550.1	2.4e-18	31.64	RING/U-box superfamily protein	[more]
AT1G04360.1	2.0e-17	31.82	RING/U-box superfamily protein	[more]
AT2G17450.1	2.6e-17	37.76	RING-H2 finger A3A	[more]
AT3G18930.1	1.3e-16	37.19	RING/U-box superfamily protein	[more]

BLAST of CmoCh15G004120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118063\|ref\|XP_008458935.1\|	2.8e-77	78.61	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo]	[more]
gi\|449450157\|ref\|XP_004142830.1\|	4.0e-76	78.95	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis sativus]	[more]
gi\|590563421\|ref\|XP_007009366.1\|	9.7e-38	56.76	RING/U-box superfamily protein, putative [Theobroma cacao]	[more]
gi\|567886986\|ref\|XP_006436015.1\|	1.7e-37	55.24	hypothetical protein CICLE_v10033620mg [Citrus clementina]	[more]
gi\|823242859\|ref\|XP_012454094.1\|	4.8e-37	53.55	PREDICTED: RING-H2 finger protein ATL52-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G004120.1	CmoCh15G004120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 95..138 score: 3.4
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 96..137 score: 8.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 96..138 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 91..140 score: 8.4
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 12..163 score: 1.9
None	No IPR available	PANTHER	PTHR14155:SF144	SUBFAMILY NOT NAMED	coord: 12..163 score: 1.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 95..143 score: 3.03

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G004120	Cucsa.010620	Cucumber (Gy14) v1	cgycmoB0543
CmoCh15G004120	Cla004681	Watermelon (97103) v1	cmowmB243
CmoCh15G004120	Csa5G512950	Cucumber (Chinese Long) v2	cmocuB288
CmoCh15G004120	MELO3C021656	Melon (DHL92) v3.5.1	cmomeB239
CmoCh15G004120	ClCG09G019980	Watermelon (Charleston Gray)	cmowcgB233
CmoCh15G004120	CSPI05G17550	Wild cucumber (PI 183967)	cmocpiB297
CmoCh15G004120	Lsi02G016550	Bottle gourd (USVL1VR-Ls)	cmolsiB261
CmoCh15G004120	Cp4.1LG13g09380	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G004120	MELO3C021656.2	Melon (DHL92) v3.6.1	cmomedB271
CmoCh15G004120	Cla97C09G181390	Watermelon (97103) v2	cmowmbB305
CmoCh15G004120	Bhi06G000626	Wax gourd	cmowgoB0375
CmoCh15G004120	CsGy5G017180	Cucumber (Gy14) v2	cgybcmoB585
CmoCh15G004120	Carg02356	Silver-seed gourd	carcmoB0362

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G004120	Cucurbita moschata (Rifu)	cmocmoB252
CmoCh15G004120	Cucurbita moschata (Rifu)	cmocmoB258
CmoCh15G004120	Cucurbita moschata (Rifu)	cmocmoB259
CmoCh15G004120	Cucurbita moschata (Rifu)	cmocmoB261
CmoCh15G004120	Cucumber (Gy14) v1	cgycmoB0466
CmoCh15G004120	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G004120	Cucurbita maxima (Rimu)	cmacmoB689
CmoCh15G004120	Cucurbita maxima (Rimu)	cmacmoB692
CmoCh15G004120	Wild cucumber (PI 183967)	cmocpiB304
CmoCh15G004120	Cucumber (Chinese Long) v2	cmocuB295
CmoCh15G004120	Cucurbita pepo (Zucchini)	cmocpeB266
CmoCh15G004120	Cucurbita pepo (Zucchini)	cmocpeB277
CmoCh15G004120	Cucurbita pepo (Zucchini)	cmocpeB279
CmoCh15G004120	Bottle gourd (USVL1VR-Ls)	cmolsiB260
CmoCh15G004120	Bottle gourd (USVL1VR-Ls)	cmolsiB273
CmoCh15G004120	Cucumber (Gy14) v2	cgybcmoB462
CmoCh15G004120	Melon (DHL92) v3.6.1	cmomedB289
CmoCh15G004120	Melon (DHL92) v3.6.1	cmomedB310
CmoCh15G004120	Silver-seed gourd	carcmoB0916
CmoCh15G004120	Silver-seed gourd	carcmoB0936
CmoCh15G004120	Cucumber (Chinese Long) v3	cmocucB0335
CmoCh15G004120	Cucumber (Chinese Long) v3	cmocucB0349
CmoCh15G004120	Watermelon (97103) v2	cmowmbB284
CmoCh15G004120	Wax gourd	cmowgoB0378
CmoCh15G004120	Wax gourd	cmowgoB0399