CsaV3_7G035410 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G035410
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Nuclear pore complex protein NUP35
Location	chr7 : 22380485 .. 22383981 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTTTGAAACGTTAGGTTATGAACTCAATTTCCATTTTATCAAAAATTTCGTTGTTGTCACCAAAAAAAAAAAACTTAAAATATGAATATTGAAATTAAAGCAATTTAATTTCGAGTGTGGGGTTCAAATAATATCACGAATCACGCTGTCAAACCGTATTCCCCACCGGAGGGAGTTGGGGTTTAGGGTTTCAAACTTTCAATTTTCAACCTTCTAAACCTTTTTAGGTCTTTTGTCGTCCACTTTGGGCGTCTCTGTTCCAAAATACTTTGGAGAGGGAAAAATCAAATTCCCAAGTCTCCTCGCCTCTCTAATTCTCTAATCCAATCGATCAGTTCGAAGCAGAGTTCGACCATTTTCTCAAGGTGATTCTCCTAATCTCTCCTCCATTTTCTCATTGCCTTTTCCAAGTTTTCTGCATTTCGTATACTTGAACTCCACTTTTGTGTTATTTGAACAATTGAATTAATATTTCCCAGCGGCTATGGACTTTTCGACCCAGTTGAACTATATAGTGTTTTAGCTGATCTATTGTTTCTTGATTTATTATAAAGTTCTAGATTGCTTCCTCAGAATTCGTATTTATTGGGTTTGTTCTGGAACCTTGATTCTCCCAACCCCCCCTGCATCTGTTAGTTCTTTAATCGAGCTCACACAGACTGTTTGGCGGTTTAATTATTAGAACTTAAACGTTCGTTTTTTCAAATTTGTTTTGTCGAAGGGAAATTTCATTTTATGTTCCTATGCAGTTGAGATATATCTTTCTTTGAAATCATGAATACCACTGTGCATAGAACTCCCAATTCTGGGAGCCGGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGAAAATTTTCAACTCCAGGCCAGGCAGCTGCTGTTTCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCAGTTTTCACTTTGGAAGACCGCTCGGTTTCAGATTTTTCTCCCGAGTCTGGGATTCCTGATTATCCTGTTTCCCCAGAAACTAAATCAGACCCCAGGACCCCTATCCGAAGGCATGACTTCTCTTCGCCGACAAAAAACAAGTCAAATGCCAGCACTTCTTATACACCAATCAGTGGACAACAAAGCCGTCAGGGATCGGCTGGCTTTAGTTGGTGGTCAACATCGAAAGGTGGTGGGAGCGAGCAAGAAGATAAGGGAAAAAGTTCACCAGTCGAAGGTGTTATTCAACCTGGTGCATTAATCACACTTCCAACCCCGAGGGAAGTTGCCAGACCGGAGGTGCAAAGGAATTGCTTGCCTTTAGCAAAACTCAATGAAGAGGAATGGGTTACTGTCTATGGGTGAGTTCTTTATTTCCTTTCTTCCTTCTCACATCATCGTTAGCTGTGGTTTTTATCTTTGAATTTGAATGATTCATTTACCATCTTTGAGTTTTGCCTTATTGATTACATTTTTTTAATCTACATATTAAACAGCTAACCAATTTTCTTTTGAGTCATCTTAAAGTTCCCTAATCACGTTGTGGACGATCAAAGTGGTTTTCGTATGTATGATATGGTTTATGCAGCCTTGCCTTGTCATTTCTCTCAGATGAATCTTTCTCTTACATGCACCCACATTTCATTCCTGCACGCAAAAACATGCTCGCATATTGAATGTTGCTTCAAAATCAATTTGATATTAAACATCTTCAATTTGGAAGCGTTTTAAGCCTGTTCTTATAGCTTGCTTTCCTTCTTGTCGAAATGAATGAGCATGCGTCATTTGTTTGACATGGAAGGAAGTACCCTAGCTGCTTAGGTTTACCTCAGTGGCAATGCTGTGGTAATTTATTGCAGGCTGCATTTATATTAGTTTTGATACGGGATTACTTGAACAAGATTTATTCTATAGATTAACAACGGTGCCCTTGAGTTCTAAAGTGAGGTTGGTTTTGATAGAAGCAATTTAAATTGTTAGTGTTGAGTATTTGATAAGAAGCGATTCTGTTACTGATTCCAAATGTTATTTATTAATTATATTATTTATTAATTATATTATTTGTTGTTCTCTTTCTTCAGATTTTCCCCTGCTGATACAAATCTAGTTTTGAGGGAGTTTGAAAAATGCGGTGAGATCTTAAAACACCTTCCTGGTCCAAGAGACGCTAATTGGATGCACATTCTTTATCAGGTACCAATGCATCTCTGTTTCCTAGCTTTATTTGACTGGTTTTCTTGGTTTTATGTTCTTTTTGTTTTAGATTCTTCCAGTCAATCTGTTATTGTAAATCGGAATGGCTTTGTTGCTAGTTGTTAAATTTTGAAATCTTGTTAATTATGTATCAATTATTGTGAAAATAACAGCACAACATGTATTCATGGATGCTAGGAAAGGCATTAGGTTTGAAGTTCGTCATTGTTGTTTTTAGTTCAACGATATGGGGGTGGTGATACAAACATCTACCGTTTGGTTAGGGTTTAATTGATACCTATTGCATGTTTTGTTTGAATATTAACCTCATCAATCAAATTAATGCTTCATAATCAAGTCAAGACTTGACACTTTGACCAGTCGAAAGATACATATTACGTTGGGTATATGTAACTCATATAATATTCGTTTATGAGCAGGAAGACGCTATATTTCAACCTCTTAGAAATACTATTTACGTTATGAACATGTTTAATTTTGTTTCTGGTGCAGAACCGATCTGATGCTCAAAAGGCTCTCAATAAAAATGGTATTCAAATTAATGGGGTGCTAATTGTTGGTGTGAAACCAGTGGACCCAATGCATCGGCAAGCACTAGAAGAAAGATTAAACAATCCAGGATTCATGGTTATCCCACCGGTATCATCTCGAACCTCAGAACTCCTTGCAACGAGAGGACCCATGCGTCCCTACAATCTTCAAAATGGTTACACTAGTGCACGGCACTCAGGAGGTGCCATAGCTTCACCATCGAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAAGCTCCTCCTCTGTGGCAAGAAATTCCTTGAAATTTGAGAGCTTACACATTGATTTGACGTGATGTTATGGACTCCTATAACTGTGTGCAATGTTCACACTTCACCGTCCATCTTGATCTTTTGATTGTTTTTCCTGATTCTTACTCAAAATGAGACAGAAGGACATGAACATGATGCTAGAACATTTTTTGTTCCCTTGAAAACCAAACAAATATGAGAACCAGGTATATAAGTATATTTCCACTTCCCACCCTTTGAACTCTCCTCTTGCTGAACTTTTACAATAGGTTGAAATAACTCATTTCAAGCATGTGGGGTAACTTTGAGTTATTATAAATTATTAATGCATGCTACAACTCAACATTGTTACATGAGCAAATTTATTTGAGAAAATACTTATAATATTATAAAGAAAATTACTTGGATGTATACTATTATTTATGTGTAACTCATTCAAGAATCAAATTATCAATTGTCAAGTGACAAGTTTGAG

mRNA sequence

ATGAATACCACTGTGCATAGAACTCCCAATTCTGGGAGCCGGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGAAAATTTTCAACTCCAGGCCAGGCAGCTGCTGTTTCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCAGTTTTCACTTTGGAAGACCGCTCGGTTTCAGATTTTTCTCCCGAGTCTGGGATTCCTGATTATCCTGTTTCCCCAGAAACTAAATCAGACCCCAGGACCCCTATCCGAAGGCATGACTTCTCTTCGCCGACAAAAAACAAGTCAAATGCCAGCACTTCTTATACACCAATCAGTGGACAACAAAGCCGTCAGGGATCGGCTGGCTTTAGTTGGTGGTCAACATCGAAAGGTGGTGGGAGCGAGCAAGAAGATAAGGGAAAAAGTTCACCAGTCGAAGGTGTTATTCAACCTGGTGCATTAATCACACTTCCAACCCCGAGGGAAGTTGCCAGACCGGAGGTGCAAAGGAATTGCTTGCCTTTAGCAAAACTCAATGAAGAGGAATGGGTTACTGTCTATGGATTTTCCCCTGCTGATACAAATCTAGTTTTGAGGGAGTTTGAAAAATGCGGTGAGATCTTAAAACACCTTCCTGGTCCAAGAGACGCTAATTGGATGCACATTCTTTATCAGAACCGATCTGATGCTCAAAAGGCTCTCAATAAAAATGGTATTCAAATTAATGGGGTGCTAATTGTTGGTGTGAAACCAGTGGACCCAATGCATCGGCAAGCACTAGAAGAAAGATTAAACAATCCAGGATTCATGGTTATCCCACCGGTATCATCTCGAACCTCAGAACTCCTTGCAACGAGAGGACCCATGCGTCCCTACAATCTTCAAAATGGTTACACTAGTGCACGGCACTCAGGAGGTGCCATAGCTTCACCATCGAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAA

Coding sequence (CDS)

ATGAATACCACTGTGCATAGAACTCCCAATTCTGGGAGCCGGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGAAAATTTTCAACTCCAGGCCAGGCAGCTGCTGTTTCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCAGTTTTCACTTTGGAAGACCGCTCGGTTTCAGATTTTTCTCCCGAGTCTGGGATTCCTGATTATCCTGTTTCCCCAGAAACTAAATCAGACCCCAGGACCCCTATCCGAAGGCATGACTTCTCTTCGCCGACAAAAAACAAGTCAAATGCCAGCACTTCTTATACACCAATCAGTGGACAACAAAGCCGTCAGGGATCGGCTGGCTTTAGTTGGTGGTCAACATCGAAAGGTGGTGGGAGCGAGCAAGAAGATAAGGGAAAAAGTTCACCAGTCGAAGGTGTTATTCAACCTGGTGCATTAATCACACTTCCAACCCCGAGGGAAGTTGCCAGACCGGAGGTGCAAAGGAATTGCTTGCCTTTAGCAAAACTCAATGAAGAGGAATGGGTTACTGTCTATGGATTTTCCCCTGCTGATACAAATCTAGTTTTGAGGGAGTTTGAAAAATGCGGTGAGATCTTAAAACACCTTCCTGGTCCAAGAGACGCTAATTGGATGCACATTCTTTATCAGAACCGATCTGATGCTCAAAAGGCTCTCAATAAAAATGGTATTCAAATTAATGGGGTGCTAATTGTTGGTGTGAAACCAGTGGACCCAATGCATCGGCAAGCACTAGAAGAAAGATTAAACAATCCAGGATTCATGGTTATCCCACCGGTATCATCTCGAACCTCAGAACTCCTTGCAACGAGAGGACCCATGCGTCCCTACAATCTTCAAAATGGTTACACTAGTGCACGGCACTCAGGAGGTGCCATAGCTTCACCATCGAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAA

Protein sequence

MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV

Homology

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BLAST of CsaV3_7G035410 vs. NCBI nr
Match: XP_004141656.1 (PREDICTED: nuclear pore complex protein NUP35 [Cucumis sativus] >KGN45595.1 hypothetical protein Csa_7G452990 [Cucumis sativus])

HSP 1 Score: 666.8 bits (1719), Expect = 3.9e-188
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0


Query: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120
           TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180
           RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300

Query: 301 GYTSARHSGGAIASPSKSLVSKVMDLMFGV 331
           GYTSARHSGGAIASPSKSLVSKVMDLMFGV
Sbjct: 301 GYTSARHSGGAIASPSKSLVSKVMDLMFGV 330

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BLAST of CsaV3_7G035410 vs. NCBI nr
Match: XP_008462444.1 (PREDICTED: nuclear pore complex protein NUP35 [Cucumis melo])

HSP 1 Score: 650.2 bits (1676), Expect = 3.8e-183
Identity = 321/330 (97.27%), Postives = 327/330 (99.09%), Query Frame = 0


Query: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120
           TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPI+GQ S
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPINGQPS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180
           RQGSAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLPLA
Sbjct: 121 RQGSAGFSWWSTSKGGGSEREDKGKSSPVEGVIQPGALITLPTPREVARPEVERNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQAL+E+LNNPGFMVIPPVSSRTSELLATRGPM PY+LQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRTSELLATRGPMLPYSLQN 300

Query: 301 GYTSARHSGGAIASPSKSLVSKVMDLMFGV 331
           G TSARHSGGAIASPSKSLVSKVMDLMFGV
Sbjct: 301 GNTSARHSGGAIASPSKSLVSKVMDLMFGV 330

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BLAST of CsaV3_7G035410 vs. NCBI nr
Match: XP_022151212.1 (nuclear pore complex protein NUP35 [Momordica charantia])

HSP 1 Score: 605.5 bits (1560), Expect = 1.1e-169
Identity = 296/330 (89.70%), Postives = 312/330 (94.55%), Query Frame = 0


Query: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTT+HRTPNSG +S+FYQDLASPVT+RKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTLHRTPNSGRQSMFYQDLASPVTSRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120
           TLEDR  SDFSPESGIPDYP+SPE KSDPRTPI+ HDFSSP KNKSNASTSYTP SGQQS
Sbjct: 61  TLEDR--SDFSPESGIPDYPLSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPTSGQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180
           RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEG +QPGALI LPTPREVARPEVQRNC P  
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGXVQPGALIILPTPREVARPEVQRNCFPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILYQNRSDA KALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300
           NG+QINGVLIVGVKPVDPMHRQAL+E++NNPGFMVIPPV SRT+ELLATRGP+R YNLQN
Sbjct: 241 NGVQINGVLIVGVKPVDPMHRQALDEKINNPGFMVIPPVPSRTTELLATRGPVRTYNLQN 300

Query: 301 GYTSARHSGGAIASPSKSLVSKVMDLMFGV 331
           G ++AR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 301 GNSNARQSGGTIASPSKSLVSKVMDLMFGV 328

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BLAST of CsaV3_7G035410 vs. NCBI nr
Match: XP_023521774.1 (nuclear pore complex protein NUP35-like [Cucurbita pepo subsp. pepo] >XP_023521848.1 nuclear pore complex protein NUP35-like [Cucurbita pepo subsp. pepo] >XP_023547551.1 nuclear pore complex protein NUP35-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 580.5 bits (1495), Expect = 3.7e-162
Identity = 288/331 (87.01%), Postives = 305/331 (92.15%), Query Frame = 0


Query: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRT NSG +SLFYQDLASPV+TR+GKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDP TPI+ HDFSSP K+KSNASTS+TPISGQQS
Sbjct: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNASTSHTPISGQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180
           RQ SAGFSWWST KGGGSEQEDKGKSSPVEGVIQPGALITL TPREVARPEVQRNCLP  
Sbjct: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILY+NRS A KAL+K
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300
           NGIQING+LIVGVKPVDP+ RQ L+E+LNNPGFMV+PPVSSRT+EL    GP+RPYN QN
Sbjct: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300

Query: 301 GYTSARHSGG-AIASPSKSLVSKVMDLMFGV 331
           G + AR SGG  IASPSKSLVSKVMDLMFGV
Sbjct: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 331

[Close]

BLAST of CsaV3_7G035410 vs. NCBI nr
Match: XP_022992333.1 (nuclear pore complex protein NUP35 [Cucurbita maxima])

HSP 1 Score: 578.2 bits (1489), Expect = 1.8e-161
Identity = 287/331 (86.71%), Postives = 304/331 (91.84%), Query Frame = 0


Query: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRT NSG +SLFYQDLASPV+TR+GKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDP TPI+ HDFSSP K+KSNASTS+TPIS QQS
Sbjct: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNASTSHTPISAQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180
           RQ SAGFSWWST KGGGSEQEDKGKSSPVEGVIQPGALITL TPREVARPEVQRNCLP  
Sbjct: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILY+NRS A KAL+K
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300
           NGIQING+LIVGVKPVDP+ RQ L+E+LNNPGFMV+PPVSSRT+EL    GP+RPYN QN
Sbjct: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300

Query: 301 GYTSARHSGG-AIASPSKSLVSKVMDLMFGV 331
           G + AR SGG  IASPSKSLVSKVMDLMFGV
Sbjct: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 331

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BLAST of CsaV3_7G035410 vs. TAIR10
Match: AT3G16310.1 (mitotic phosphoprotein N' end (MPPN) family protein)

HSP 1 Score: 434.9 bits (1117), Expect = 4.5e-122
Identity = 226/334 (67.66%), Postives = 261/334 (78.14%), Query Frame = 0


Query: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+   HRTP SG +SL +QDLASPV+ R+GKFS+PGQAAAVSALWRENFG SDLPPPP++
Sbjct: 1   MSAAAHRTPKSGRQSLLFQDLASPVSARRGKFSSPGQAAAVSALWRENFGGSDLPPPPMY 60

Query: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRR--HDFSSPTKNKSNASTSYTPISGQ 120
           TL+DR  SDFSPESGI DY  SP+ KSD RTP +    +  +P K K  AS S++ ++ Q
Sbjct: 61  TLDDR--SDFSPESGIADYSASPDAKSDRRTPFQSSGKNIVTPGKGKLEASPSFSLLNAQ 120

Query: 121 QSRQGSAGFSWWSTSKGGGS-EQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCL 180
           QS+Q S   SWWS SK G S EQ+DKGK SPVEGV+QPGAL+TLP PREVARPEVQR  +
Sbjct: 121 QSQQVSGSPSWWSQSKAGSSTEQDDKGKGSPVEGVVQPGALVTLPPPREVARPEVQRQII 180

Query: 181 PLAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKA 240
           P   L+EEEWVTVYGFSP DTNLVLREFEKCG +LKH+PGPR+ANWMHILYQNRSDA KA
Sbjct: 181 PTGNLDEEEWVTVYGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKA 240

Query: 241 LNKNGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYN 300
           LNK G+ INGV+IVGVKPVDP+ +QAL ERLNN GFM +PP SS  +     R   RP  
Sbjct: 241 LNKAGMMINGVVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTRN---TARPLSRPQY 300

Query: 301 LQNGYT-SARHSGGAIASPSKSLVSKVMDLMFGV 331
           LQNG   S + SGGA+ASPSKS+VSK  DLMFGV
Sbjct: 301 LQNGSAFSPQPSGGAMASPSKSMVSKFFDLMFGV 329

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BLAST of CsaV3_7G035410 vs. Swiss-Prot
Match: sp|O04326|NUP35_ARATH (Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana OX=3702 GN=NUP35 PE=1 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 8.1e-121
Identity = 226/334 (67.66%), Postives = 261/334 (78.14%), Query Frame = 0


Query: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+   HRTP SG +SL +QDLASPV+ R+GKFS+PGQAAAVSALWRENFG SDLPPPP++
Sbjct: 1   MSAAAHRTPKSGRQSLLFQDLASPVSARRGKFSSPGQAAAVSALWRENFGGSDLPPPPMY 60

Query: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRR--HDFSSPTKNKSNASTSYTPISGQ 120
           TL+DR  SDFSPESGI DY  SP+ KSD RTP +    +  +P K K  AS S++ ++ Q
Sbjct: 61  TLDDR--SDFSPESGIADYSASPDAKSDRRTPFQSSGKNIVTPGKGKLEASPSFSLLNAQ 120

Query: 121 QSRQGSAGFSWWSTSKGGGS-EQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCL 180
           QS+Q S   SWWS SK G S EQ+DKGK SPVEGV+QPGAL+TLP PREVARPEVQR  +
Sbjct: 121 QSQQVSGSPSWWSQSKAGSSTEQDDKGKGSPVEGVVQPGALVTLPPPREVARPEVQRQII 180

Query: 181 PLAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKA 240
           P   L+EEEWVTVYGFSP DTNLVLREFEKCG +LKH+PGPR+ANWMHILYQNRSDA KA
Sbjct: 181 PTGNLDEEEWVTVYGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKA 240

Query: 241 LNKNGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYN 300
           LNK G+ INGV+IVGVKPVDP+ +QAL ERLNN GFM +PP SS  +     R   RP  
Sbjct: 241 LNKAGMMINGVVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTRN---TARPLSRPQY 300

Query: 301 LQNGYT-SARHSGGAIASPSKSLVSKVMDLMFGV 331
           LQNG   S + SGGA+ASPSKS+VSK  DLMFGV
Sbjct: 301 LQNGSAFSPQPSGGAMASPSKSMVSKFFDLMFGV 329

[Close]

BLAST of CsaV3_7G035410 vs. Swiss-Prot
Match: sp|Q6P6X9|NUP35_DANRE (Nucleoporin NUP35 OS=Danio rerio OX=7955 GN=nup35 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.2e-16
Identity = 55/177 (31.07%), Postives = 91/177 (51.41%), Query Frame = 0


Query: 160 TLPTPREVARPEVQRNCLPLAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPR 219
           T  +P +V     Q + L      ++ W+TV+GF PA  + +L +F + G ILKH+    
Sbjct: 133 TTLSPAQVDPFFTQGDALSSEDQLDDTWITVFGFPPASASYILLQFAQYGNILKHVMS-N 192

Query: 220 DANWMHILYQNRSDAQKALNKNGIQINGVLIVGVKP-VDPMHRQALEERLNNPGFMVIPP 279
             NWMH+ YQ++  A+KAL+K+G      +++GVKP +D    ++L++  +    +  PP
Sbjct: 193 TGNWMHVQYQSKLQARKALSKDGKIFGEAIMIGVKPCIDKSVMESLDKG-STSSSVFTPP 252

Query: 280 VS---SRTSELLATRGPMRPYNLQNGYTSARH---SGGAIASPSKSLVSKVMDLMFG 330
           V    + +  L   R  MRP +     +S+ +   S        +S VSK M+ MFG
Sbjct: 253 VKAPCTPSHPLSTPRSVMRPLSAAYKASSSDYQVVSDQQTPKKDESFVSKAMEYMFG 307

[Close]

BLAST of CsaV3_7G035410 vs. Swiss-Prot
Match: sp|Q8NFH5|NUP35_HUMAN (Nucleoporin NUP35 OS=Homo sapiens OX=9606 GN=NUP35 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-15
Identity = 98/341 (28.74%), Postives = 145/341 (42.52%), Query Frame = 0


Query: 21  LASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSVSDFSP-------- 80
           L SP + + G          V+A +   F   DLP P   T + RS+S  S         
Sbjct: 20  LGSPTSPKPG----------VNAQFLPGFLMGDLPAP--VTPQPRSISGPSVGVMEMRSP 79

Query: 81  --ESGIPDYPVSPETKSDPRTPIRR---HDFSSP--------TKNKSNASTSYTPISGQQ 140
               G P  PV P  K     P  R    D SSP        ++ + N S   +P+ G  
Sbjct: 80  LLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSPLVGVT 139

Query: 141 SRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPL 200
           S  G+ G S +S +  G           P +  + P  L    T         Q + L  
Sbjct: 140 STPGT-GQSMFSPASIG----------QPRKTTLSPAQLDPFYT---------QGDSLTS 199

Query: 201 AKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALN 260
               ++ WVTV+GF  A  + +L +F + G ILKH+      NWMHI YQ++  A+KAL+
Sbjct: 200 EDHLDDSWVTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS 259

Query: 261 KNGIQINGVLIVGVKP-VDPMHRQALEE-RLNNPGFMVIPPVSSRTSELLATRGP----M 320
           K+G      +++GVKP +D    ++ +   L++P     PP+ +  +       P    M
Sbjct: 260 KDGRIFGESIMIGVKPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGSTPRISTM 319

Query: 321 RPYNLQNGYTSARHSGGAIA---SPSK--SLVSKVMDLMFG 330
           RP  L   Y ++      I+   +P K  SLVSK M+ MFG
Sbjct: 320 RP--LATAYKASTSDYQVISDRQTPKKDESLVSKAMEYMFG 325

[Close]

BLAST of CsaV3_7G035410 vs. Swiss-Prot
Match: sp|Q68FY1|NUP35_RAT (Nucleoporin NUP35 OS=Rattus norvegicus OX=10116 GN=Nup35 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-13
Identity = 96/355 (27.04%), Postives = 143/355 (40.28%), Query Frame = 0


Query: 7   RTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRS 66
           + P  GS  +    L SP + + G           +A +   F   DLP P   T + RS
Sbjct: 9   QAPTLGSEPMM---LGSPTSPKPG----------ANAQFLPGFLMGDLPAP--VTPQPRS 68

Query: 67  VSDFSP----------ESGIPDYPVSPETKSDPRTPIRR---HDFSS--------PTKNK 126
           +S  S             G P  PV P  K     P  R    D SS        P++ +
Sbjct: 69  ISGPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLPSRRQ 128

Query: 127 SNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPR 186
           +N S   +P+ G             +T   G S         P +  + P  L    T  
Sbjct: 129 ANISVLQSPLVGV------------TTPVTGQSMFSPANIGQPRKTTLSPAQLDPFYT-- 188

Query: 187 EVARPEVQRNCLPLAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMH 246
                  Q + L      ++ WVTV+GF  A  + +L +F + G ILKH+      NWMH
Sbjct: 189 -------QGDSLTSEDHLDDTWVTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMH 248

Query: 247 ILYQNRSDAQKALNKNGIQINGVLIVGVKPVDPMHRQALEER--LNNPGFMVIPPVSSRT 306
           I YQ++  A+KAL+K+G      +++GVKP    +     +R  L++P     PP+ +  
Sbjct: 249 IRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKNVMENSDRGVLSSPSLAFTPPIRTLG 308

Query: 307 SELLATRGP----MRPYNLQNGYTSARHSGGAIA---SPSK--SLVSKVMDLMFG 330
           +       P    MRP  L   Y ++      I+   +P K  SLVS+ M+ MFG
Sbjct: 309 TPTQPGSTPRVSTMRP--LATAYKASTSDYQVISDRQTPKKDESLVSRAMEYMFG 324

[Close]

BLAST of CsaV3_7G035410 vs. Swiss-Prot
Match: sp|Q9VWS2|NUP35_DROME (Nucleoporin Nup35 OS=Drosophila melanogaster OX=7227 GN=Nup35 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.6e-13
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = 0


Query: 187 WVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNKNGIQIN 246
           WVT++GF P   ++VL+ F  CG I+  +  P++ NWM++ Y +R ++ KALN N   I 
Sbjct: 192 WVTIFGFPPGAGSMVLQHFTVCGTIVDVVHAPQNGNWMYVRYSSRIESDKALNYNEKIIA 251

Query: 247 GVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQNGYTSAR 306
           G ++VGV           E   + P   +  P +S ++        +RP++ Q  Y  AR
Sbjct: 252 GNVMVGVSRCTDRSVIDKENIGSVPNAEIGDPPTSPSA--------IRPFS-QQSYKLAR 311

Query: 307 HSGGAIASPSK-------SLVSKVMDLMFG 330
                I SP K        L+ K MDL+FG
Sbjct: 312 KDN--IISPQKDVPQKSSGLMDKAMDLIFG 330

[Close]

BLAST of CsaV3_7G035410 vs. TrEMBL
Match: tr|A0A0A0K7B2|A0A0A0K7B2_CUCSA (Nuclear pore complex protein NUP35 OS=Cucumis sativus OX=3659 GN=Csa_7G452990 PE=3 SV=1)

HSP 1 Score: 666.8 bits (1719), Expect = 2.6e-188
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0


Query: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120
           TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180
           RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300

Query: 301 GYTSARHSGGAIASPSKSLVSKVMDLMFGV 331
           GYTSARHSGGAIASPSKSLVSKVMDLMFGV
Sbjct: 301 GYTSARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of CsaV3_7G035410 vs. TrEMBL
Match: tr|A0A1S3CH09|A0A1S3CH09_CUCME (Nuclear pore complex protein NUP35 OS=Cucumis melo OX=3656 GN=LOC103500791 PE=3 SV=1)

HSP 1 Score: 650.2 bits (1676), Expect = 2.5e-183
Identity = 321/330 (97.27%), Postives = 327/330 (99.09%), Query Frame = 0


Query: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120
           TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPI+GQ S
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPINGQPS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180
           RQGSAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLPLA
Sbjct: 121 RQGSAGFSWWSTSKGGGSEREDKGKSSPVEGVIQPGALITLPTPREVARPEVERNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQAL+E+LNNPGFMVIPPVSSRTSELLATRGPM PY+LQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRTSELLATRGPMLPYSLQN 300

Query: 301 GYTSARHSGGAIASPSKSLVSKVMDLMFGV 331
           G TSARHSGGAIASPSKSLVSKVMDLMFGV
Sbjct: 301 GNTSARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of CsaV3_7G035410 vs. TrEMBL
Match: tr|A0A2N9FQ87|A0A2N9FQ87_FAGSY (Nuclear pore complex protein NUP35 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17177 PE=3 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 6.2e-142
Identity = 259/333 (77.78%), Postives = 287/333 (86.19%), Query Frame = 0


Query: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+TTV RTP SG +SLF+QDLASP++ R+GKFS+PGQAAAVSALWRENF  SDLPPPPVF
Sbjct: 1   MSTTVQRTPRSGRQSLFFQDLASPISARRGKFSSPGQAAAVSALWRENFAGSDLPPPPVF 60

Query: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRR--HDFSSPTKNKSNASTSYTPISGQ 120
           TLEDR  SDFSPESGIPDYP+SPE KSDPRTP +    DFS+P KNKS ASTSY  +  Q
Sbjct: 61  TLEDR--SDFSPESGIPDYPLSPEVKSDPRTPAQSSGRDFSTPGKNKSEASTSYALMGVQ 120

Query: 121 QSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP 180
           Q++QGSAG +WWS +K  GSEQEDKGKSSPVEGV+QPGALITLP PREVARPEVQRNCLP
Sbjct: 121 QNQQGSAGLNWWSPAK-SGSEQEDKGKSSPVEGVVQPGALITLPPPREVARPEVQRNCLP 180

Query: 181 LAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKAL 240
              LNEEEWVTVYGFSP+DTN VLREFEKCG ILKH+PGPRDANWMHILYQNR DAQKAL
Sbjct: 181 AGNLNEEEWVTVYGFSPSDTNSVLREFEKCGVILKHVPGPRDANWMHILYQNRFDAQKAL 240

Query: 241 NKNGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVI-PPVSSRTSELLATRGPMRPYN 300
           +KNG+QINGVLIVGVKP+DPM RQAL ERLNN GFM + PP S+++SEL   R P  PY 
Sbjct: 241 SKNGMQINGVLIVGVKPLDPMQRQALSERLNNQGFMTLPPPPSTKSSELNTLRSPPHPYY 300

Query: 301 LQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 331
           LQNG T+AR SGGAIASP+KSLVSK+MDLMFGV
Sbjct: 301 LQNGSTNARQSGGAIASPTKSLVSKIMDLMFGV 330

[Close]

BLAST of CsaV3_7G035410 vs. TrEMBL
Match: tr|A0A2P4HA17|A0A2P4HA17_QUESU (Nuclear pore complex protein NUP35 OS=Quercus suber OX=58331 GN=CFP56_13655 PE=3 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 8.1e-142
Identity = 257/333 (77.18%), Postives = 288/333 (86.49%), Query Frame = 0


Query: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+TTV RTP SG +SLF+QDLASPV+ R+GKFS+PGQAAAVSALWRENF  SDLPPPPVF
Sbjct: 1   MSTTVQRTPRSGRQSLFFQDLASPVSARRGKFSSPGQAAAVSALWRENFAGSDLPPPPVF 60

Query: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRR--HDFSSPTKNKSNASTSYTPISGQ 120
           TLEDR  SDFSPESGIPDYP+SPE KSDPRTP++    D S+P KNKS ASTSY  +  Q
Sbjct: 61  TLEDR--SDFSPESGIPDYPLSPEAKSDPRTPVQSSGRDISTPGKNKSEASTSYALMGAQ 120

Query: 121 QSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP 180
           Q++QGSAG +WWS +K  GSEQEDKGKSSPVEGV+QPGALITLP PREVARPEVQRNCLP
Sbjct: 121 QNQQGSAGLNWWSPAK-SGSEQEDKGKSSPVEGVVQPGALITLPPPREVARPEVQRNCLP 180

Query: 181 LAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKAL 240
              LNEEEWVTVYGFSP+DTNLVLREFEKCG ILKH+PGPR+ANWMHILYQNR DAQKAL
Sbjct: 181 TGDLNEEEWVTVYGFSPSDTNLVLREFEKCGVILKHVPGPREANWMHILYQNRFDAQKAL 240

Query: 241 NKNGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPP-VSSRTSELLATRGPMRPYN 300
           +KNG+QINGVLIVGVKP+DPM RQAL ER+NN GFM +PP  S+++SEL   + P RPY 
Sbjct: 241 SKNGMQINGVLIVGVKPLDPMQRQALSERVNNQGFMTLPPQPSTKSSELNTLKAPSRPYY 300

Query: 301 LQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 331
           LQNG T+ R SGGAIASP+KSLVSK+MDLMFGV
Sbjct: 301 LQNGSTNTRQSGGAIASPTKSLVSKIMDLMFGV 330

[Close]

BLAST of CsaV3_7G035410 vs. TrEMBL
Match: tr|A0A2P5ESQ6|A0A2P5ESQ6_9ROSA (Nuclear pore complex protein NUP35 OS=Trema orientalis OX=63057 GN=TorRG33x02_156370 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 7.1e-138
Identity = 253/335 (75.52%), Postives = 289/335 (86.27%), Query Frame = 0


Query: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+TTV+RTP  G +SLF+QDLASP++ R+GKFS+PGQAAAVSALWRENFG SDLPPPPVF
Sbjct: 1   MSTTVNRTPKLGGQSLFFQDLASPISARRGKFSSPGQAAAVSALWRENFGGSDLPPPPVF 60

Query: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIR--RHDFSSPTKNKSNASTSYTPISGQ 120
           TLEDR  SDFSPESGIPDYPVSPE +SDPR+P++    DF +P K+KS ASTS   +S +
Sbjct: 61  TLEDR--SDFSPESGIPDYPVSPEIRSDPRSPVQSSSRDFLTPLKSKSEASTSGALMSAE 120

Query: 121 QSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP 180
           Q++QGSAGF+WWS +K  GSEQ++KGKSSPVEGV+QPGALITLP PREVARPE+QRN LP
Sbjct: 121 QTQQGSAGFNWWSPTK-SGSEQDEKGKSSPVEGVVQPGALITLPPPREVARPEMQRNTLP 180

Query: 181 L--AKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQK 240
                LNEEEWVTVYGFSPADTNLVLREFEKCG ILKH+PGPRDANWMHILYQNRSDAQK
Sbjct: 181 TGNGNLNEEEWVTVYGFSPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQK 240

Query: 241 ALNKNGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTS-ELLATRGPMRP 300
           AL+KNG+QING+LIVGVKP+DPMHRQAL +RLNN GFM +PP  S  S EL A+ GP RP
Sbjct: 241 ALSKNGMQINGMLIVGVKPLDPMHRQALNDRLNNQGFMTLPPQPSFISAELSASGGPSRP 300

Query: 301 YNLQNGYTSARHSGGAIASPSKSLVSKVMDLMFGV 331
           Y LQNG T+ R +GGAIASP+KSL SK+MDLMFGV
Sbjct: 301 YYLQNGNTNVRQTGGAIASPTKSLASKLMDLMFGV 332

The following BLAST results are available for this feature:

BLAST of CsaV3_7G035410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141656.1	3.9e-188	100.00	PREDICTED: nuclear pore complex protein NUP35 [Cucumis sativus] >KGN45595.1 hypo...	[more]
XP_008462444.1	3.8e-183	97.27	PREDICTED: nuclear pore complex protein NUP35 [Cucumis melo]	[more]
XP_022151212.1	1.1e-169	89.70	nuclear pore complex protein NUP35 [Momordica charantia]	[more]
XP_023521774.1	3.7e-162	87.01	nuclear pore complex protein NUP35-like [Cucurbita pepo subsp. pepo] >XP_0235218...	[more]
XP_022992333.1	1.8e-161	86.71	nuclear pore complex protein NUP35 [Cucurbita maxima]	[more]

BLAST of CsaV3_7G035410 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G16310.1	4.5e-122	67.66	mitotic phosphoprotein N' end (MPPN) family protein	[more]

BLAST of CsaV3_7G035410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04326\|NUP35_ARATH	8.1e-121	67.66	Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana OX=3702 GN=NUP35 PE=1...	[more]
sp\|Q6P6X9\|NUP35_DANRE	4.2e-16	31.07	Nucleoporin NUP35 OS=Danio rerio OX=7955 GN=nup35 PE=1 SV=1	[more]
sp\|Q8NFH5\|NUP35_HUMAN	2.7e-15	28.74	Nucleoporin NUP35 OS=Homo sapiens OX=9606 GN=NUP35 PE=1 SV=1	[more]
sp\|Q68FY1\|NUP35_RAT	1.5e-13	27.04	Nucleoporin NUP35 OS=Rattus norvegicus OX=10116 GN=Nup35 PE=1 SV=1	[more]
sp\|Q9VWS2\|NUP35_DROME	5.6e-13	32.67	Nucleoporin Nup35 OS=Drosophila melanogaster OX=7227 GN=Nup35 PE=1 SV=1	[more]

BLAST of CsaV3_7G035410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K7B2\|A0A0A0K7B2_CUCSA	2.6e-188	100.00	Nuclear pore complex protein NUP35 OS=Cucumis sativus OX=3659 GN=Csa_7G452990 PE...	[more]
tr\|A0A1S3CH09\|A0A1S3CH09_CUCME	2.5e-183	97.27	Nuclear pore complex protein NUP35 OS=Cucumis melo OX=3656 GN=LOC103500791 PE=3 ...	[more]
tr\|A0A2N9FQ87\|A0A2N9FQ87_FAGSY	6.2e-142	77.78	Nuclear pore complex protein NUP35 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17177...	[more]
tr\|A0A2P4HA17\|A0A2P4HA17_QUESU	8.1e-142	77.18	Nuclear pore complex protein NUP35 OS=Quercus suber OX=58331 GN=CFP56_13655 PE=3...	[more]
tr\|A0A2P5ESQ6\|A0A2P5ESQ6_9ROSA	7.1e-138	75.52	Nuclear pore complex protein NUP35 OS=Trema orientalis OX=63057 GN=TorRG33x02_15...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006913	nucleocytoplasmic transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0031965	nuclear membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR007846	RRM_NUP35_dom
IPR017389	Nucleoporin_NUP53

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0051028	mRNA transport
biological_process	GO:0015031	protein transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0031965	nuclear membrane
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G035410.1	CsaV3_7G035410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017389	Nucleoporin, NUP53	PIRSF	PIRSF038119	NUP53	coord: 3..330 e-value: 1.6E-100 score: 335.0
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PFAM	PF05172	Nup35_RRM	coord: 183..266 e-value: 1.5E-25 score: 89.0
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PROSITE	PS51472	RRM_NUP35	coord: 182..263 score: 33.101
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 182..256 e-value: 2.6E-25 score: 90.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..153
None	No IPR available	PANTHER	PTHR21527	FAMILY NOT NAMED	coord: 7..330
None	No IPR available	CDD	cd12441	RRM_Nup53_like	coord: 185..258 e-value: 1.38352E-35 score: 124.261
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 185..261

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G035410	CSPI07G23430	Wild cucumber (PI 183967)	cpicucB414
CsaV3_7G035410	Cucsa.361160	Cucumber (Gy14) v1	cgycucB550
CsaV3_7G035410	CmaCh17G007810	Cucurbita maxima (Rimu)	cmacucB0456
CsaV3_7G035410	CmoCh17G007480	Cucurbita moschata (Rifu)	cmocucB0449
CsaV3_7G035410	Cp4.1LG12g08340	Cucurbita pepo (Zucchini)	cpecucB0181
CsaV3_7G035410	CsGy7G021690	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G035410	Carg09503	Silver-seed gourd	carcucB1073
CsaV3_7G035410	Cla000889	Watermelon (97103) v1	cucwmB576
CsaV3_7G035410	MELO3C024450	Melon (DHL92) v3.5.1	cucmeB537
CsaV3_7G035410	ClCG09G000060	Watermelon (Charleston Gray)	cucwcgB546
CsaV3_7G035410	Lsi02G030020	Bottle gourd (USVL1VR-Ls)	cuclsiB538
CsaV3_7G035410	MELO3C024450.2	Melon (DHL92) v3.6.1	cucmedB525
CsaV3_7G035410	Cla97C09G161920	Watermelon (97103) v2	cucwmbB592
CsaV3_7G035410	Bhi09G000362	Wax gourd	cucwgoB737

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G035410	Silver-seed gourd	carcucB0781
CsaV3_7G035410	Cucurbita maxima (Rimu)	cmacucB1089
CsaV3_7G035410	Cucurbita moschata (Rifu)	cmocucB1071
CsaV3_7G035410	Cucurbita pepo (Zucchini)	cpecucB0415