ClCG09G000060 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G000060
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Nucleoporin NUP53, putative
Location	CG_Chr09 : 88231 .. 92164 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCACTGGAGGAAGTTGAGGTTTAGGGTTTCAAACTTTCAATTTCCAAATTTTTTAGGTCTTTTTCGTCCCATTTGGGCGTCTCTATTCTAATCACTTTCGGGAGGGAAAAAATCAAATTCCCAACTCCCATCGCCTCTCAAATTCTCCGATCCAATCGATCAGTTCGAAGCAGAGCTCGACCATTCTCAAGGTCATTATCCTAATCTCTCCATTTTCTCATTACCTTCTCGCAGTTTCCTGAATTTCGCATACTGGAATTGCACTCTTGTGTTATTTGAATTTTTGAGAGAATCAAGGAGGAGAAAGTGGAAGCTATTTTGTAAATTGGTTCTCTGAACTTTTCGAAGCTCAAGCTTGGTTGAGTTAATCTTTCCCGCGTTTTCCCAGCGGCTTTTGATTTTTCGAAATGGCTAATCTGGGGTTTTTATTTTTCGAGTCGAACTATATGCGTATTAGCTGATCTGTTGCTTCTTTATTTATTTTAAAGTTCTAGATTGTTTTCTCAGAATTCGTATTAGTGGGGTTTGTTCTGAACCTAGATTGCTCCCGGCATCTGCTAGTTCTTTAATCGAGCTTACTCGTCTTTGACGTTGGAGATTTTGTTATCATTTGATGGTCTAGTCTGTACTTGGGTTCTTTAGCGGTTTAGTCAGAACTTAAACGTTCGTTTTCCATATTTATTTTGTTGAAGGAAAAACTGATTAGATGTTCGTATGCAGTTGCGATATATTTTTCTTCTAAGTCATGAACACCACTGTGCATAGAACTCCCAATTCTGGGAGGCAGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGGAAATTTTCAACTCCAGGTCAGGCAGCTGCTGTATCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCGGTTTTCACCTTGGAAGACCGCTCGGGCTCAGATTTTTCTCCTGAGTCTGGGATTCCTGATTATCCAGTTTCCCCAGAAATTAAATCAGACCCAAGGACCCCTATCCAAAGTCACGACTTCTCTTCGCCGATGAAAAACAAGTCAAATGCCAGCACTTCATACACACCAATTAGTGGACAACAAAGCCGGCAGGGATCAGCTGGCTTTAGTTGGTGGTCAACATCGAAAGGTGGTGGGAGCGAGCAAGAAGATAAGGGAAAAAGTTCACCAGTCGAAGGTGTGATTCAACCTGGTGCACTAATCACACTTCCAACCCCAAGGGAAGTTGCCAGACCGGAAGTGCAGAGAAATTGCTTGCCTGCAGCAAAACTCAATGAGGAGGAATGGGTTACTGTCTATGGGTGAGTTCTCTATTCCCTTTCACCCCTCTCATTCATCATCATTACCTGAGATTTTTGTTGTCGGTTGAACTTTGAATGATTCATTTACCATCTTAGAGTTGTTATGCCCTATTGATTTCAGATGTTTTTATTATGTTAAACAGCCGATCATTTTTCTTTCAAGTCATCTTGGAATTTCCTAAATCATGATGAAGATTATTACATTTGTTTTAGTTGTATATGGTTTATGCAGTCTTGCCTTGCCATTTCTCTTGGATGCATCTCTCTCTCTCTCACACACACTCATACTTCACCCCTACACATGATAACATGCTCATGTATTGAGCATCGTTTCAATTAATCACTGACATTTAACATCTTCATTTGGAAGTGTTGTAAGCCTGTCATTTTACCTTGGTTTCCTTCTTGTTGAAATGAATGAGCATGCTTCAATTTTCTGGCATGTAAGGAGGTACCTAGCTGCCTTAGATTTACCTCGGTAGCAATGCTGTTGGTTTTGATATACACAATTTAAACTTTTAGTATTTTGTATTTGATAAGAACTGTGTTTTAAAAGGCCCATTCAGGCGCGCGCCTAGGCTCAAGGCACAGGTATGGCGCCTCGCCTTTCAAGACGAGGCTTGCAAAATAAGGCGTGCCTCAGGCGCGTGCCTTTTTTGAAGCCCCTAGGCTCAAAAGCCCTCGGCCTTGGGGCTTTTTCATTATTTTTAAAAATAGTAATAATTAAAGGTTTTTCTTCCTTATTAACTAAAAGAATCAAGTTTACTAAGCCTAAATGCAAAATTTCTTGTGTTTGGGGTCTTTTCTTTAACATATATCCACTTCAACTATGCTCTCTTTTTATTGCAATACTTTTATATATAGTGCGCCTCACAGAAAAAGCCCGTGTCTTTTTGTGCGCCTTGCGTATAGGCTCCAGAGGGCCATTGTGGCTTAGTGCGCCTTGGGCATTTAAAAACACTGGATATGAAGCAATGCTGTTATTGATTCCAATGTTCTTTCTTATTTGTATAATTTTGTGCCTTCTTTCTTCAGATTCTCTCCTGCTGATACAAATCTAGTTTTGAGGGAATTTGAAAAATGCGGTGAGATCTTGAAACACGTTCCTGGTCCAAGAGATGCTAATTGGATGCACATTCTTTATCAGGTACCAATCTACCTACATTTACCTGCTTTATTCGACTATGTTTTTCTCGATTTGACGTTCTTTTTCTTTTAGACACATTCAGTCAATCTGTCATTTGAAATCGGAATGGCTTTGTTGCTAGTTGGTAAAATTTGGGAACTTGATAATTATGTATTAATTTTTATGAAAATAAATGTGCAACACTTGTTTTTGGATGCTAGGAAAGGTATTAGATTTCAAGTCTTTAAAATTATAGTTGTTTTTTTTATTGAGTTCTCAAGTTGGCTAGTTAGGTTTAAGATTTAATTGACACCTGCTGAGCGTTTTGTTTGGATATTGACCTCATCAAATCAACACACACACATATATATACACATATATATATATACACACACATATATACACACACATATATATATATACACACACATATATATGGGAAATTATTTTAAATGACAAAATTGTTGAAAATATTTACAAATAATAGCAAAATATCACAGTCCATCTGCGATATACCACGATAGATCACGATAGACTACTATTTGTGTCTATCATGATACAAATAGACATAGATAGTAGTCTATCGCGGTCTATTGCAGATAGATAGTAAAATTTTGTATATTTGTAAATATTTTGGTTCATTTTTCTATATTTGAAAATAACCCTATATATATATATTATATTAAGTATATGTAACTCATATGATGTCAATATATGAGTAGGAAGATGCTATATTCAACATCTTAGAAAACTATTTGCGTTACGAATATGTTGTTTCTTTTGTTGCTGGTGCAGAACCGATCTGATGCTCACAGGGCTCTCAACAAAAATGGTATTCAAATTAATGGAGTGCTAATTGTTGGTGTGAAACCAGTGGACCCAATGCACCGGCAGGCACTAGAGGAAAAATTAAACAACCCAGGATTCATGGTTACCCCACCGGTATCTTCTCGAACCACAGAACTCCTTGCAACGAGAGGGCCGTCGCGTTCCTACAATCTTCAAAATGGTAACAGTAGTGCACGGCAGTCAGGAGGTACCATTGCTTCGCCATCCAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAAGTTATCTCCTCTCTCAATATCGACTTTCTGTGGCAAGAAATTCCTAAAACTTTGAGAGCATACACATTGAGTTGGCATGATATGTTATAGGTTGTTTTAACTGTGTACAATGTTCACAGTCCTCCATCTTGATACTTGTGATTGTTTTTCCTGATTCTTACTCTTACAAAATGAGACAGAGGGAAATGAACATGATGCTGGAACTTTTTTTGGGCCCTTGAGAACCAACAAATATCGAAACCAGGTATAAAGTATATTTCCAATTCCCACCCCGTTAAACATCACCCTCAACCCCCCAACAAGTGGAGTGGGAACTTTTACAATAGATTGAAATTCTTATCCTCTGTTTCATTCTTGTTTTGGGGAAATTGAAAAATCGGTTCCA

mRNA sequence

CCCCACTGGAGGAAGTTGAGGTTTAGGGTTTCAAACTTTCAATTTCCAAATTTTTTAGGTCTTTTTCGTCCCATTTGGGCGTCTCTATTCTAATCACTTTCGGGAGGGAAAAAATCAAATTCCCAACTCCCATCGCCTCTCAAATTCTCCGATCCAATCGATCAGTTCGAAGCAGAGCTCGACCATTCTCAAGTTGCGATATATTTTTCTTCTAAGTCATGAACACCACTGTGCATAGAACTCCCAATTCTGGGAGGCAGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGGAAATTTTCAACTCCAGGTCAGGCAGCTGCTGTATCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCGGTTTTCACCTTGGAAGACCGCTCGGGCTCAGATTTTTCTCCTGAGTCTGGGATTCCTGATTATCCAGTTTCCCCAGAAATTAAATCAGACCCAAGGACCCCTATCCAAAGTCACGACTTCTCTTCGCCGATGAAAAACAAGTCAAATGCCAGCACTTCATACACACCAATTAGTGGACAACAAAGCCGGCAGGGATCAGCTGGCTTTAGTTGGTGGTCAACATCGAAAGGTGGTGGGAGCGAGCAAGAAGATAAGGGAAAAAGTTCACCAGTCGAAGGTGTGATTCAACCTGGTGCACTAATCACACTTCCAACCCCAAGGGAAGTTGCCAGACCGGAAGTGCAGAGAAATTGCTTGCCTGCAGCAAAACTCAATGAGGAGGAATGGGTTACTGTCTATGGATTCTCTCCTGCTGATACAAATCTAGTTTTGAGGGAATTTGAAAAATGCGGTGAGATCTTGAAACACGTTCCTGGTCCAAGAGATGCTAATTGGATGCACATTCTTTATCAGAACCGATCTGATGCTCACAGGGCTCTCAACAAAAATGGTATTCAAATTAATGGAGTGCTAATTGTTGGTGTGAAACCAGTGGACCCAATGCACCGGCAGGCACTAGAGGAAAAATTAAACAACCCAGGATTCATGGTTACCCCACCGGTATCTTCTCGAACCACAGAACTCCTTGCAACGAGAGGGCCGTCGCGTTCCTACAATCTTCAAAATGGTAACAGTAGTGCACGGCAGTCAGGAGGTACCATTGCTTCGCCATCCAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAAGTTATCTCCTCTCTCAATATCGACTTTCTGTGGCAAGAAATTCCTAAAACTTTGAGAGCATACACATTGAGTTGGCATGATATGTTATAGGTTGTTTTAACTGTGTACAATGTTCACAGTCCTCCATCTTGATACTTGTGATTGTTTTTCCTGATTCTTACTCTTACAAAATGAGACAGAGGGAAATGAACATGATGCTGGAACTTTTTTTGGGCCCTTGAGAACCAACAAATATCGAAACCAGGTATAAAGTATATTTCCAATTCCCACCCCGTTAAACATCACCCTCAACCCCCCAACAAGTGGAGTGGGAACTTTTACAATAGATTGAAATTCTTATCCTCTGTTTCATTCTTGTTTTGGGGAAATTGAAAAATCGGTTCCA

Coding sequence (CDS)

ATGAACACCACTGTGCATAGAACTCCCAATTCTGGGAGGCAGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGGAAATTTTCAACTCCAGGTCAGGCAGCTGCTGTATCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCGGTTTTCACCTTGGAAGACCGCTCGGGCTCAGATTTTTCTCCTGAGTCTGGGATTCCTGATTATCCAGTTTCCCCAGAAATTAAATCAGACCCAAGGACCCCTATCCAAAGTCACGACTTCTCTTCGCCGATGAAAAACAAGTCAAATGCCAGCACTTCATACACACCAATTAGTGGACAACAAAGCCGGCAGGGATCAGCTGGCTTTAGTTGGTGGTCAACATCGAAAGGTGGTGGGAGCGAGCAAGAAGATAAGGGAAAAAGTTCACCAGTCGAAGGTGTGATTCAACCTGGTGCACTAATCACACTTCCAACCCCAAGGGAAGTTGCCAGACCGGAAGTGCAGAGAAATTGCTTGCCTGCAGCAAAACTCAATGAGGAGGAATGGGTTACTGTCTATGGATTCTCTCCTGCTGATACAAATCTAGTTTTGAGGGAATTTGAAAAATGCGGTGAGATCTTGAAACACGTTCCTGGTCCAAGAGATGCTAATTGGATGCACATTCTTTATCAGAACCGATCTGATGCTCACAGGGCTCTCAACAAAAATGGTATTCAAATTAATGGAGTGCTAATTGTTGGTGTGAAACCAGTGGACCCAATGCACCGGCAGGCACTAGAGGAAAAATTAAACAACCCAGGATTCATGGTTACCCCACCGGTATCTTCTCGAACCACAGAACTCCTTGCAACGAGAGGGCCGTCGCGTTCCTACAATCTTCAAAATGGTAACAGTAGTGCACGGCAGTCAGGAGGTACCATTGCTTCGCCATCCAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAA

Protein sequence

MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQNGNSSARQSGGTIASPSKSLVSKVMDLMFGV

Homology

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BLAST of ClCG09G000060 vs. Swiss-Prot
Match: NUP35_ARATH (Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana GN=NUP35 PE=1 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 5.3e-125
Identity = 229/334 (68.56%), Postives = 261/334 (78.14%), Query Frame = 1


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+   HRTP SGRQSL +QDLASPV+ R+GKFS+PGQAAAVSALWRENFG SDLPPPP++
Sbjct: 1   MSAAAHRTPKSGRQSLLFQDLASPVSARRGKFSSPGQAAAVSALWRENFGGSDLPPPPMY 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSH--DFSSPMKNKSNASTSYTPISGQ 120
           TL+DRS  DFSPESGI DY  SP+ KSD RTP QS   +  +P K K  AS S++ ++ Q
Sbjct: 61  TLDDRS--DFSPESGIADYSASPDAKSDRRTPFQSSGKNIVTPGKGKLEASPSFSLLNAQ 120

Query: 121 QSRQGSAGFSWWSTSKGGGS-EQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCL 180
           QS+Q S   SWWS SK G S EQ+DKGK SPVEGV+QPGAL+TLP PREVARPEVQR  +
Sbjct: 121 QSQQVSGSPSWWSQSKAGSSTEQDDKGKGSPVEGVVQPGALVTLPPPREVARPEVQRQII 180

Query: 181 PAAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRA 240
           P   L+EEEWVTVYGFSP DTNLVLREFEKCG +LKHVPGPR+ANWMHILYQNRSDAH+A
Sbjct: 181 PTGNLDEEEWVTVYGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKA 240

Query: 241 LNKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYN 300
           LNK G+ INGV+IVGVKPVDP+ +QAL E+LNN GFM  PP SS        R  SR   
Sbjct: 241 LNKAGMMINGVVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTRN---TARPLSRPQY 300

Query: 301 LQNGNS-SARQSGGTIASPSKSLVSKVMDLMFGV 331
           LQNG++ S + SGG +ASPSKS+VSK  DLMFGV
Sbjct: 301 LQNGSAFSPQPSGGAMASPSKSMVSKFFDLMFGV 329

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BLAST of ClCG09G000060 vs. Swiss-Prot
Match: NUP53_XENTR (Nucleoporin NUP53 OS=Xenopus tropicalis GN=nup35 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.6e-18
Identity = 96/347 (27.67%), Postives = 149/347 (42.94%), Query Frame = 1


Query: 9   PNSGRQSL---FYQDLASPVTTRKGKFSTPGQAAAVSAL-WRENFGNSDLPPPPVF-TLE 68
           P++G Q L      D+ +PVT        P Q  ++  +  R    +   PP PV  T +
Sbjct: 24  PSAGAQFLPGFLLGDIPTPVT--------PQQRPSIGVMEMRSPLLSGGSPPQPVVPTHK 83

Query: 69  DRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFS---SPMKNKSNASTSYTPISGQQS 128
           D+SG+   P   I D   SP + S P  P ++  FS   +P+     +S     ISG + 
Sbjct: 84  DKSGAP--PVRSIYDDIASPGLGSTPLNPRKTASFSVLHTPLSGVIPSSPECKNISGSRK 143

Query: 129 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 188
           R  S+ FS    +  G S +                   T  +P ++     Q + L + 
Sbjct: 144 RPASSVFS---PATIGHSRK-------------------TTLSPAQMDPFYTQGDALTSD 203

Query: 189 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 248
              ++ WVTV+GF  A  + +L +F + G I+KHV    + NWMHI YQ++  A +AL+K
Sbjct: 204 DQLDDTWVTVFGFPQASASYILLQFAQYGNIIKHVMS-NNGNWMHIQYQSKLQARKALSK 263

Query: 249 NGIQINGVLIVGVKPVDPMHRQALEEKLNNP--GFMVTPPVSSRTTELLATRGPSRSYNL 308
           +G      +++GVKP          EK++ P    + TPPV +  T       P++S   
Sbjct: 264 DGRIFGESIMIGVKPCIDKSVMEATEKVSTPTVSSVFTPPVKNIGT-------PTQSVGT 323

Query: 309 QNGNSSARQSGGTIASPS----------------KSLVSKVMDLMFG 330
               +S R    T  +P+                +S+VSK M+ MFG
Sbjct: 324 PRA-ASMRPLAATYKTPASADYQVVADKQAPRKDESIVSKAMEYMFG 329

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BLAST of ClCG09G000060 vs. Swiss-Prot
Match: NUP53_DANRE (Nucleoporin NUP53 OS=Danio rerio GN=nup35 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.2e-17
Identity = 94/332 (28.31%), Postives = 137/332 (41.27%), Query Frame = 1


Query: 8   TPNSGRQSL---FYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLED 67
           +P  G Q L      DL +PVT +   F   G A   S L          P P V T +D
Sbjct: 17  SPKPGAQFLPGFLMGDLPAPVTPQPRSFGLTGGAEIRSPL----LAGGSPPQPVVPTPKD 76

Query: 68  RSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQSRQGS 127
           +SG+   P   I D      +   P               K   +  +TP+SG Q   G+
Sbjct: 77  KSGAP--PVRSIYDDLNGSAVGMSPLAA-----------RKQPFAGVHTPLSGLQGTPGT 136

Query: 128 AGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNE 187
               +   S      Q+ K                T  +P +V     Q + L +    +
Sbjct: 137 VSNFFSPVS------QQRK----------------TTLSPAQVDPFFTQGDALSSEDQLD 196

Query: 188 EEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNKNGIQ 247
           + W+TV+GF PA  + +L +F + G ILKHV      NWMH+ YQ++  A +AL+K+G  
Sbjct: 197 DTWITVFGFPPASASYILLQFAQYGNILKHVMS-NTGNWMHVQYQSKLQARKALSKDGKI 256

Query: 248 INGVLIVGVKP-VDPMHRQALEEKLNNPGFMVTPPVSSRTT---ELLATRGPSRSYN-LQ 307
               +++GVKP +D    ++L +K +    + TPPV +  T    L   R   R  +   
Sbjct: 257 FGEAIMIGVKPCIDKSVMESL-DKGSTSSSVFTPPVKAPCTPSHPLSTPRSVMRPLSAAY 307

Query: 308 NGNSSARQSGGTIASPSK--SLVSKVMDLMFG 330
             +SS  Q      +P K  S VSK M+ MFG
Sbjct: 317 KASSSDYQVVSDQQTPKKDESFVSKAMEYMFG 307

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BLAST of ClCG09G000060 vs. Swiss-Prot
Match: NUP53_HUMAN (Nucleoporin NUP53 OS=Homo sapiens GN=NUP35 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-15
Identity = 91/334 (27.25%), Postives = 142/334 (42.51%), Query Frame = 1


Query: 21  LASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYP 80
           L SP + + G          V+A +   F   DLP P   T + RS S   P  G+ +  
Sbjct: 20  LGSPTSPKPG----------VNAQFLPGFLMGDLPAP--VTPQPRSIS--GPSVGVMEMR 79

Query: 81  VSPEIK--SDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGS 140
            SP +   S P+  + +H      K+KS A     P+        S G    ST      
Sbjct: 80  -SPLLAGGSPPQPVVPAH------KDKSGAP----PVRSIYDDISSPGLG--STPLTSRR 139

Query: 141 EQEDKGKSSPVEGVIQ-PGALITLPTPREVARPE-------------VQRNCLPAAKLNE 200
           +       SP+ GV   PG   ++ +P  + +P               Q + L +    +
Sbjct: 140 QPNISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYTQGDSLTSEDHLD 199

Query: 201 EEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNKNGIQ 260
           + WVTV+GF  A  + +L +F + G ILKHV      NWMHI YQ++  A +AL+K+G  
Sbjct: 200 DSWVTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRI 259

Query: 261 INGVLIVGVKP-VDPMHRQALEE-KLNNPGFMVTPPVSS-------RTTELLATRGPSRS 320
               +++GVKP +D    ++ +   L++P    TPP+ +        +T  ++T  P  +
Sbjct: 260 FGESIMIGVKPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGSTPRISTMRPLAT 319

Query: 321 YNLQNGNSSARQSGGTIASPSKSLVSKVMDLMFG 330
               + +     S        +SLVSK M+ MFG
Sbjct: 320 AYKASTSDYQVISDRQTPKKDESLVSKAMEYMFG 325

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BLAST of ClCG09G000060 vs. Swiss-Prot
Match: NUP53_RAT (Nucleoporin NUP53 OS=Rattus norvegicus GN=Nup35 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.0e-14
Identity = 58/207 (28.02%), Postives = 95/207 (45.89%), Query Frame = 1


Query: 147 SPVEGVIQPGALITLPTPREVARPE-------------VQRNCLPAAKLNEEEWVTVYGF 206
           SP+ GV  P    ++ +P  + +P               Q + L +    ++ WVTV+GF
Sbjct: 121 SPLVGVTTPVTGQSMFSPANIGQPRKTTLSPAQLDPFYTQGDSLTSEDHLDDTWVTVFGF 180

Query: 207 SPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNKNGIQINGVLIVGV 266
             A  + +L +F + G ILKHV      NWMHI YQ++  A +AL+K+G      +++GV
Sbjct: 181 PQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGV 240

Query: 267 KPVDPMHRQALEEK----LNNPGFMVTPPVSS-------RTTELLATRGPSRSYNLQNGN 326
           KP   + +  +E      L++P    TPP+ +        +T  ++T  P  +    + +
Sbjct: 241 KPC--IDKNVMENSDRGVLSSPSLAFTPPIRTLGTPTQPGSTPRVSTMRPLATAYKASTS 300

Query: 327 SSARQSGGTIASPSKSLVSKVMDLMFG 330
                S        +SLVS+ M+ MFG
Sbjct: 301 DYQVISDRQTPKKDESLVSRAMEYMFG 324

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BLAST of ClCG09G000060 vs. TrEMBL
Match: A0A0A0K7B2_CUCSA (Nuclear pore complex protein NUP35 OS=Cucumis sativus GN=Csa_7G452990 PE=3 SV=1)

HSP 1 Score: 633.6 bits (1633), Expect = 1.3e-178
Identity = 310/330 (93.94%), Postives = 317/330 (96.06%), Query Frame = 1


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSSP KNKSNASTSYTPISGQQS
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP A
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILYQNRSDA +ALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQALEE+LNNPGFMV PPVSSRT+ELLATRGP R YNLQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300

Query: 301 GNSSARQSGGTIASPSKSLVSKVMDLMFGV 331
           G +SAR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 301 GYTSARHSGGAIASPSKSLVSKVMDLMFGV 330

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BLAST of ClCG09G000060 vs. TrEMBL
Match: W9RV02_9ROSA (Nuclear pore complex protein NUP35 OS=Morus notabilis GN=L484_026260 PE=3 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 5.2e-143
Identity = 254/333 (76.28%), Postives = 289/333 (86.79%), Query Frame = 1


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+TTVHRTP SGRQSLF+QDLASP++ R+GKFSTPGQAAAVSALWRENF  SDLPPPPVF
Sbjct: 1   MSTTVHRTPKSGRQSLFFQDLASPISARRGKFSTPGQAAAVSALWRENFSGSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSPMKNKSNASTSYTPISGQ 120
           TLEDRS  DFSPESGIPDYPVSPE +SDPR+P+QS   DF +P+K+KS ASTS   +S Q
Sbjct: 61  TLEDRS--DFSPESGIPDYPVSPEARSDPRSPVQSSGRDFLTPVKSKSEASTSSAMMSAQ 120

Query: 121 QSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP 180
           Q++QGS+GF+WWS SK   SEQ++KG SSPVEGV+QPGALITLP PREVARPE+QRN LP
Sbjct: 121 QNQQGSSGFNWWSPSKSS-SEQDEKGNSSPVEGVVQPGALITLPPPREVARPEMQRNALP 180

Query: 181 AAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRAL 240
              LNEEEWVTVYGFSPADTNLVLREFEKCG ILKHVPGPR+ANWMHILYQNRSD  +AL
Sbjct: 181 TGNLNEEEWVTVYGFSPADTNLVLREFEKCGVILKHVPGPREANWMHILYQNRSDVLKAL 240

Query: 241 NKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFM-VTPPVSSRTTELLATRGPSRSYN 300
           +KNG+QING+LIVGVKP+DPM RQAL ++LNN GFM + PP S++T EL A  GPSR Y 
Sbjct: 241 SKNGMQINGILIVGVKPLDPMQRQALNDRLNNQGFMTLPPPPSAKTGELNAVGGPSRPYY 300

Query: 301 LQNGNSSARQSGGTIASPSKSLVSKVMDLMFGV 331
           LQNGN++ RQSGG IASP+KSL SK+MDLMFGV
Sbjct: 301 LQNGNANVRQSGGAIASPTKSLASKIMDLMFGV 330

[Close]

BLAST of ClCG09G000060 vs. TrEMBL
Match: A0A061GBV6_THECC (Nuclear pore complex protein NUP35 OS=Theobroma cacao GN=TCM_028859 PE=3 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 5.7e-142
Identity = 251/331 (75.83%), Postives = 286/331 (86.40%), Query Frame = 1


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+TTVHRTP SGRQSLF+QDLASPV+ R+GKFS+PGQAAAVSALWRENFG SDLPPPP++
Sbjct: 1   MSTTVHRTPKSGRQSLFFQDLASPVSARRGKFSSPGQAAAVSALWRENFGGSDLPPPPMY 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSPMKNKSNASTSYTPISGQ 120
           TLEDRS  DFSPESGI DYP+SPEIKSDPR P+Q+   DFS+P K+KS ASTS++ +SGQ
Sbjct: 61  TLEDRS--DFSPESGILDYPMSPEIKSDPRNPVQTSGRDFSTPAKSKSEASTSFSVLSGQ 120

Query: 121 QSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP 180
           Q++Q     SWWS +K  GSEQ+DKGK SPVEGV+QPGALITLP PREVARPE+QRN +P
Sbjct: 121 QNQQSPTSLSWWSPTKASGSEQDDKGKGSPVEGVVQPGALITLPPPREVARPEIQRNSIP 180

Query: 181 AAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRAL 240
           A  L+EEEWVTVYGFSPADTNLVLREFEKCG ILKHVPGPRDANWMHILYQNRSDA RAL
Sbjct: 181 AGNLDEEEWVTVYGFSPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQRAL 240

Query: 241 NKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNL 300
            KNG+QINGVLIVGVKPVDPM RQAL+E+LNN GFM  PP +SR++EL   R PS  Y L
Sbjct: 241 GKNGMQINGVLIVGVKPVDPMQRQALDERLNNQGFMTLPPPASRSSELNNFR-PSHPYYL 300

Query: 301 QNGNSSARQSGGTIASPSKSLVSKVMDLMFG 330
           QNGN++ARQSGG IA+P+KSL  KVM+ +FG
Sbjct: 301 QNGNTNARQSGGAIANPTKSLGLKVMEFLFG 328

[Close]

BLAST of ClCG09G000060 vs. TrEMBL
Match: A0A0S3SFM8_PHAAN (Nuclear pore complex protein NUP35 OS=Vigna angularis var. angularis GN=Vigan.07G024200 PE=3 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 1.4e-140
Identity = 258/334 (77.25%), Postives = 286/334 (85.63%), Query Frame = 1


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+ TV RTP SGRQSLF+QDLASPV+TR+GK S+PGQAAAVSALWRENFG+SDLPPPPVF
Sbjct: 1   MSATVQRTPRSGRQSLFFQDLASPVSTRRGKVSSPGQAAAVSALWRENFGSSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSPMKNKSNASTSYTPISGQ 120
           TLEDRS  DFSPESGI DY VSPEIKSD RTPIQ+   +FS+P KNKS ASTSY     Q
Sbjct: 61  TLEDRS--DFSPESGILDYQVSPEIKSDTRTPIQTSNREFSTPGKNKSEASTSYALRGVQ 120

Query: 121 QSRQGSAGFSWWS--TSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNC 180
           Q++Q S G SWWS  T+K GG EQ++KGKSSPVEGV+QPGALITLP P EVARPEVQRN 
Sbjct: 121 QNQQTSPGMSWWSPATAKSGG-EQDEKGKSSPVEGVVQPGALITLPPPLEVARPEVQRNS 180

Query: 181 LPAAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHR 240
           LPA  LNEEEWVTVYGFSP DTN+VLREFEKCGEILKHVPGPRDANWMHILYQNRSDAH+
Sbjct: 181 LPAGNLNEEEWVTVYGFSPGDTNMVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHK 240

Query: 241 ALNKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSY 300
           ALNKNG+QINGVLIVGVK +DPM RQAL E+LNN GFM  P  S R +E+   + P+RSY
Sbjct: 241 ALNKNGMQINGVLIVGVKLLDPMQRQALNERLNNQGFMPLPLPSVRNSEVSTLKAPARSY 300

Query: 301 NLQNGNSSARQSGGTIASPSKSLVSKVMDLMFGV 331
             QNGNS+ARQ+GGTIASP+KSLVSK+MDLMFGV
Sbjct: 301 YAQNGNSTARQTGGTIASPTKSLVSKIMDLMFGV 331

[Close]

BLAST of ClCG09G000060 vs. TrEMBL
Match: A0A0L9UP68_PHAAN (Nuclear pore complex protein NUP35 OS=Phaseolus angularis GN=LR48_Vigan05g209100 PE=3 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 1.4e-140
Identity = 258/334 (77.25%), Postives = 286/334 (85.63%), Query Frame = 1


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+ TV RTP SGRQSLF+QDLASPV+TR+GK S+PGQAAAVSALWRENFG+SDLPPPPVF
Sbjct: 1   MSATVQRTPRSGRQSLFFQDLASPVSTRRGKVSSPGQAAAVSALWRENFGSSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSPMKNKSNASTSYTPISGQ 120
           TLEDRS  DFSPESGI DY VSPEIKSD RTPIQ+   +FS+P KNKS ASTSY     Q
Sbjct: 61  TLEDRS--DFSPESGILDYQVSPEIKSDTRTPIQTSNREFSTPGKNKSEASTSYALRGVQ 120

Query: 121 QSRQGSAGFSWWS--TSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNC 180
           Q++Q S G SWWS  T+K GG EQ++KGKSSPVEGV+QPGALITLP P EVARPEVQRN 
Sbjct: 121 QNQQTSPGMSWWSPATAKSGG-EQDEKGKSSPVEGVVQPGALITLPPPLEVARPEVQRNS 180

Query: 181 LPAAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHR 240
           LPA  LNEEEWVTVYGFSP DTN+VLREFEKCGEILKHVPGPRDANWMHILYQNRSDAH+
Sbjct: 181 LPAGNLNEEEWVTVYGFSPGDTNMVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHK 240

Query: 241 ALNKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSY 300
           ALNKNG+QINGVLIVGVK +DPM RQAL E+LNN GFM  P  S R +E+   + P+RSY
Sbjct: 241 ALNKNGMQINGVLIVGVKLLDPMQRQALNERLNNQGFMPLPLPSVRNSEVSTLKAPARSY 300

Query: 301 NLQNGNSSARQSGGTIASPSKSLVSKVMDLMFGV 331
             QNGNS+ARQ+GGTIASP+KSLVSK+MDLMFGV
Sbjct: 301 YAQNGNSTARQTGGTIASPTKSLVSKIMDLMFGV 331

[Close]

BLAST of ClCG09G000060 vs. TAIR10
Match: AT3G16310.1 (AT3G16310.1 mitotic phosphoprotein N' end (MPPN) family protein)

HSP 1 Score: 448.7 bits (1153), Expect = 3.0e-126
Identity = 229/334 (68.56%), Postives = 261/334 (78.14%), Query Frame = 1


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+   HRTP SGRQSL +QDLASPV+ R+GKFS+PGQAAAVSALWRENFG SDLPPPP++
Sbjct: 1   MSAAAHRTPKSGRQSLLFQDLASPVSARRGKFSSPGQAAAVSALWRENFGGSDLPPPPMY 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSH--DFSSPMKNKSNASTSYTPISGQ 120
           TL+DRS  DFSPESGI DY  SP+ KSD RTP QS   +  +P K K  AS S++ ++ Q
Sbjct: 61  TLDDRS--DFSPESGIADYSASPDAKSDRRTPFQSSGKNIVTPGKGKLEASPSFSLLNAQ 120

Query: 121 QSRQGSAGFSWWSTSKGGGS-EQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCL 180
           QS+Q S   SWWS SK G S EQ+DKGK SPVEGV+QPGAL+TLP PREVARPEVQR  +
Sbjct: 121 QSQQVSGSPSWWSQSKAGSSTEQDDKGKGSPVEGVVQPGALVTLPPPREVARPEVQRQII 180

Query: 181 PAAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRA 240
           P   L+EEEWVTVYGFSP DTNLVLREFEKCG +LKHVPGPR+ANWMHILYQNRSDAH+A
Sbjct: 181 PTGNLDEEEWVTVYGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKA 240

Query: 241 LNKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYN 300
           LNK G+ INGV+IVGVKPVDP+ +QAL E+LNN GFM  PP SS        R  SR   
Sbjct: 241 LNKAGMMINGVVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTRN---TARPLSRPQY 300

Query: 301 LQNGNS-SARQSGGTIASPSKSLVSKVMDLMFGV 331
           LQNG++ S + SGG +ASPSKS+VSK  DLMFGV
Sbjct: 301 LQNGSAFSPQPSGGAMASPSKSMVSKFFDLMFGV 329

[Close]

BLAST of ClCG09G000060 vs. NCBI nr
Match: gi|449447801|ref|XP_004141656.1| (PREDICTED: nuclear pore complex protein NUP35 [Cucumis sativus])

HSP 1 Score: 633.6 bits (1633), Expect = 1.9e-178
Identity = 310/330 (93.94%), Postives = 317/330 (96.06%), Query Frame = 1


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSSP KNKSNASTSYTPISGQQS
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP A
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILYQNRSDA +ALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQALEE+LNNPGFMV PPVSSRT+ELLATRGP R YNLQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300

Query: 301 GNSSARQSGGTIASPSKSLVSKVMDLMFGV 331
           G +SAR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 301 GYTSARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of ClCG09G000060 vs. NCBI nr
Match: gi|659124973|ref|XP_008462444.1| (PREDICTED: nucleoporin NUP53 [Cucumis melo])

HSP 1 Score: 625.9 bits (1613), Expect = 3.9e-176
Identity = 305/330 (92.42%), Postives = 316/330 (95.76%), Query Frame = 1


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSSP KNKSNASTSYTPI+GQ S
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPINGQPS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP A
Sbjct: 121 RQGSAGFSWWSTSKGGGSEREDKGKSSPVEGVIQPGALITLPTPREVARPEVERNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILYQNRSDA +ALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQAL+EKLNNPGFMV PPVSSRT+ELLATRGP   Y+LQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRTSELLATRGPMLPYSLQN 300

Query: 301 GNSSARQSGGTIASPSKSLVSKVMDLMFGV 331
           GN+SAR SGG IASPSKSLVSKVMDLMFGV
Sbjct: 301 GNTSARHSGGAIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of ClCG09G000060 vs. NCBI nr
Match: gi|703104926|ref|XP_010098126.1| (hypothetical protein L484_026260 [Morus notabilis])

HSP 1 Score: 515.4 bits (1326), Expect = 7.4e-143
Identity = 254/333 (76.28%), Postives = 289/333 (86.79%), Query Frame = 1


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+TTVHRTP SGRQSLF+QDLASP++ R+GKFSTPGQAAAVSALWRENF  SDLPPPPVF
Sbjct: 1   MSTTVHRTPKSGRQSLFFQDLASPISARRGKFSTPGQAAAVSALWRENFSGSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSPMKNKSNASTSYTPISGQ 120
           TLEDRS  DFSPESGIPDYPVSPE +SDPR+P+QS   DF +P+K+KS ASTS   +S Q
Sbjct: 61  TLEDRS--DFSPESGIPDYPVSPEARSDPRSPVQSSGRDFLTPVKSKSEASTSSAMMSAQ 120

Query: 121 QSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP 180
           Q++QGS+GF+WWS SK   SEQ++KG SSPVEGV+QPGALITLP PREVARPE+QRN LP
Sbjct: 121 QNQQGSSGFNWWSPSKSS-SEQDEKGNSSPVEGVVQPGALITLPPPREVARPEMQRNALP 180

Query: 181 AAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRAL 240
              LNEEEWVTVYGFSPADTNLVLREFEKCG ILKHVPGPR+ANWMHILYQNRSD  +AL
Sbjct: 181 TGNLNEEEWVTVYGFSPADTNLVLREFEKCGVILKHVPGPREANWMHILYQNRSDVLKAL 240

Query: 241 NKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFM-VTPPVSSRTTELLATRGPSRSYN 300
           +KNG+QING+LIVGVKP+DPM RQAL ++LNN GFM + PP S++T EL A  GPSR Y 
Sbjct: 241 SKNGMQINGILIVGVKPLDPMQRQALNDRLNNQGFMTLPPPPSAKTGELNAVGGPSRPYY 300

Query: 301 LQNGNSSARQSGGTIASPSKSLVSKVMDLMFGV 331
           LQNGN++ RQSGG IASP+KSL SK+MDLMFGV
Sbjct: 301 LQNGNANVRQSGGAIASPTKSLASKIMDLMFGV 330

[Close]

BLAST of ClCG09G000060 vs. NCBI nr
Match: gi|590619335|ref|XP_007024271.1| (Mitotic phosphoprotein N' end (MPPN) family protein [Theobroma cacao])

HSP 1 Score: 511.9 bits (1317), Expect = 8.2e-142
Identity = 251/331 (75.83%), Postives = 286/331 (86.40%), Query Frame = 1


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+TTVHRTP SGRQSLF+QDLASPV+ R+GKFS+PGQAAAVSALWRENFG SDLPPPP++
Sbjct: 1   MSTTVHRTPKSGRQSLFFQDLASPVSARRGKFSSPGQAAAVSALWRENFGGSDLPPPPMY 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSPMKNKSNASTSYTPISGQ 120
           TLEDRS  DFSPESGI DYP+SPEIKSDPR P+Q+   DFS+P K+KS ASTS++ +SGQ
Sbjct: 61  TLEDRS--DFSPESGILDYPMSPEIKSDPRNPVQTSGRDFSTPAKSKSEASTSFSVLSGQ 120

Query: 121 QSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP 180
           Q++Q     SWWS +K  GSEQ+DKGK SPVEGV+QPGALITLP PREVARPE+QRN +P
Sbjct: 121 QNQQSPTSLSWWSPTKASGSEQDDKGKGSPVEGVVQPGALITLPPPREVARPEIQRNSIP 180

Query: 181 AAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRAL 240
           A  L+EEEWVTVYGFSPADTNLVLREFEKCG ILKHVPGPRDANWMHILYQNRSDA RAL
Sbjct: 181 AGNLDEEEWVTVYGFSPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQRAL 240

Query: 241 NKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNL 300
            KNG+QINGVLIVGVKPVDPM RQAL+E+LNN GFM  PP +SR++EL   R PS  Y L
Sbjct: 241 GKNGMQINGVLIVGVKPVDPMQRQALDERLNNQGFMTLPPPASRSSELNNFR-PSHPYYL 300

Query: 301 QNGNSSARQSGGTIASPSKSLVSKVMDLMFG 330
           QNGN++ARQSGG IA+P+KSL  KVM+ +FG
Sbjct: 301 QNGNTNARQSGGAIANPTKSLGLKVMEFLFG 328

[Close]

BLAST of ClCG09G000060 vs. NCBI nr
Match: gi|950964558|ref|XP_014498603.1| (PREDICTED: nuclear pore complex protein NUP35 [Vigna radiata var. radiata])

HSP 1 Score: 508.4 bits (1308), Expect = 9.1e-141
Identity = 258/334 (77.25%), Postives = 287/334 (85.93%), Query Frame = 1


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+ TV RTP SGRQSLF+QDLASPV+TR+GK S+PGQAAAVSALWRENFG+SDLPPPPVF
Sbjct: 1   MSATVQRTPRSGRQSLFFQDLASPVSTRRGKVSSPGQAAAVSALWRENFGSSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSPMKNKSNASTSYTPISGQ 120
           TLEDRS  DFSPESGI DY VSPEIKSD RTPIQ+   +FS+P KNKS ASTSY     Q
Sbjct: 61  TLEDRS--DFSPESGILDYQVSPEIKSDTRTPIQTSNREFSTPGKNKSEASTSYALRGVQ 120

Query: 121 QSRQGSAGFSWWS--TSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNC 180
           Q++Q S G SWWS  T+K GG EQ++KGKSSPVEGV+QPGALITLP P EVARPEV RN 
Sbjct: 121 QNQQTSPGLSWWSPATAKSGG-EQDEKGKSSPVEGVVQPGALITLPPPLEVARPEVHRNS 180

Query: 181 LPAAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHR 240
           LPA  LNEEEWVTVYGFSP DTN+VLREFEKCGEILKHVPGPRDANWMHILYQNRSDAH+
Sbjct: 181 LPAGNLNEEEWVTVYGFSPGDTNMVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHK 240

Query: 241 ALNKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSY 300
           ALNKNG+QINGVLIVGVK +DPM RQAL E+LNN GFM  P  S+R +E+   + P+RSY
Sbjct: 241 ALNKNGMQINGVLIVGVKLLDPMQRQALNERLNNQGFMPLPLPSARNSEVSTLKAPARSY 300

Query: 301 NLQNGNSSARQSGGTIASPSKSLVSKVMDLMFGV 331
            LQNGNS+ARQ+GGTIASP+KSLVSK+MDLMFGV
Sbjct: 301 YLQNGNSTARQTGGTIASPTKSLVSKIMDLMFGV 331

The following BLAST results are available for this feature:

BLAST of ClCG09G000060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NUP35_ARATH	5.3e-125	68.56	Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana GN=NUP35 PE=1 SV=1	[more]
NUP53_XENTR	2.6e-18	27.67	Nucleoporin NUP53 OS=Xenopus tropicalis GN=nup35 PE=2 SV=1	[more]
NUP53_DANRE	8.2e-17	28.31	Nucleoporin NUP53 OS=Danio rerio GN=nup35 PE=1 SV=1	[more]
NUP53_HUMAN	3.5e-15	27.25	Nucleoporin NUP53 OS=Homo sapiens GN=NUP35 PE=1 SV=1	[more]
NUP53_RAT	5.0e-14	28.02	Nucleoporin NUP53 OS=Rattus norvegicus GN=Nup35 PE=1 SV=1	[more]

BLAST of ClCG09G000060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7B2_CUCSA	1.3e-178	93.94	Nuclear pore complex protein NUP35 OS=Cucumis sativus GN=Csa_7G452990 PE=3 SV=1	[more]
W9RV02_9ROSA	5.2e-143	76.28	Nuclear pore complex protein NUP35 OS=Morus notabilis GN=L484_026260 PE=3 SV=1	[more]
A0A061GBV6_THECC	5.7e-142	75.83	Nuclear pore complex protein NUP35 OS=Theobroma cacao GN=TCM_028859 PE=3 SV=1	[more]
A0A0S3SFM8_PHAAN	1.4e-140	77.25	Nuclear pore complex protein NUP35 OS=Vigna angularis var. angularis GN=Vigan.07...	[more]
A0A0L9UP68_PHAAN	1.4e-140	77.25	Nuclear pore complex protein NUP35 OS=Phaseolus angularis GN=LR48_Vigan05g209100...	[more]

BLAST of ClCG09G000060 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G16310.1	3.0e-126	68.56	mitotic phosphoprotein N' end (MPPN) family protein	[more]

BLAST of ClCG09G000060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447801\|ref\|XP_004141656.1\|	1.9e-178	93.94	PREDICTED: nuclear pore complex protein NUP35 [Cucumis sativus]	[more]
gi\|659124973\|ref\|XP_008462444.1\|	3.9e-176	92.42	PREDICTED: nucleoporin NUP53 [Cucumis melo]	[more]
gi\|703104926\|ref\|XP_010098126.1\|	7.4e-143	76.28	hypothetical protein L484_026260 [Morus notabilis]	[more]
gi\|590619335\|ref\|XP_007024271.1\|	8.2e-142	75.83	Mitotic phosphoprotein N' end (MPPN) family protein [Theobroma cacao]	[more]
gi\|950964558\|ref\|XP_014498603.1\|	9.1e-141	77.25	PREDICTED: nuclear pore complex protein NUP35 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007846	RRM_NUP35_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR017389	Nucleoporin_NUP53

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0031965	nuclear membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051028	mRNA transport
biological_process	GO:0006607	NLS-bearing protein import into nucleus
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0015031	protein transport
biological_process	GO:0006999	nuclear pore organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005643	nuclear pore
cellular_component	GO:0031965	nuclear membrane
cellular_component	GO:0044613	nuclear pore central transport channel
cellular_component	GO:0044615	nuclear pore nuclear basket
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0005487	nucleocytoplasmic transporter activity
molecular_function	GO:0005543	phospholipid binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G000060.1	ClCG09G000060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PFAM	PF05172	Nup35_RRM	coord: 182..267 score: 3.8
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PROFILE	PS51472	RRM_NUP35	coord: 182..263 score: 32
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 185..261 score: 1.37
IPR017389	Nucleoporin, NUP53	PIR	PIRSF038119	NUP53	coord: 3..330 score: 3.2E
None	No IPR available	PANTHER	PTHR21527	FAMILY NOT NAMED	coord: 1..330 score: 8.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG09G000060	Csa7G452990	Cucumber (Chinese Long) v2	cuwcgB524
ClCG09G000060	MELO3C024450	Melon (DHL92) v3.5.1	mewcgB174
ClCG09G000060	Cla000889	Watermelon (97103) v1	wcgwmB006
ClCG09G000060	Bhi09G000362	Wax gourd	wcgwgoB066
ClCG09G000060	CSPI07G23430	Wild cucumber (PI 183967)	cpiwcgB553
ClCG09G000060	Cucsa.361160	Cucumber (Gy14) v1	cgywcgB610
ClCG09G000060	CmaCh17G007810	Cucurbita maxima (Rimu)	cmawcgB308
ClCG09G000060	CmoCh17G007480	Cucurbita moschata (Rifu)	cmowcgB301
ClCG09G000060	Lsi02G030020	Bottle gourd (USVL1VR-Ls)	lsiwcgB160
ClCG09G000060	Cp4.1LG12g08340	Cucurbita pepo (Zucchini)	cpewcgB128
ClCG09G000060	CsGy7G021690	Cucumber (Gy14) v2	cgybwcgB484
ClCG09G000060	MELO3C024450.2	Melon (DHL92) v3.6.1	medwcgB168
ClCG09G000060	Carg09503	Silver-seed gourd	carwcgB1002
ClCG09G000060	CsaV3_7G035410	Cucumber (Chinese Long) v3	cucwcgB546

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G000060	Cucurbita maxima (Rimu)	cmawcgB778
ClCG09G000060	Cucurbita moschata (Rifu)	cmowcgB779
ClCG09G000060	Silver-seed gourd	carwcgB0723
ClCG09G000060	Watermelon (97103) v2	wcgwmbB035