CsaV3_7G030960 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G030960
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	RNA binding
Location	chr7 : 19605165 .. 19607872 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTAAGGTTGAGAATTGAGAGAGCCAAAGAAAACACAAAATTTCCAAAAAGGATATTTTTGTGGCGGAAAAATAACTAACAAAACTGGCTCTCTCTCTCTCAGCTCACGAAGCTTATCTTACTGAGAGAGCTCCTCTTCCATGGCGACCTTAAGCTTCAATCCCACCAGAATAAGAACCCTAGGGGGTCTTCACTTTACCAAATCCAAACCTATTTATTCCCCATTTTCACAATCAATCAAAACCGCAAACAGATTCTCAGCCAATGGCCGTATCAGTCAGCAACCACTACCTCGTTTTAGATCAAATTCTGTATCAGAAAGCTCGGTCACGGCGCCGGAAGAGGTGGAATTGAACGAGGATGAGGATGACCCGACCTTGGAGATGGCCTATTTGGATTCGGAAACTGATCCGGAGAGTATTACGGAGTGGGAGTTGGATTTCTGCTCCAGACCTATTTTGGATATCAGAGGGAAGAAGGTGTGGGAGCTTGTAGTCTGTGATAACTCGCTCTCTCTTCAATACACGAAATATTTTCCTAACAATGTTATTAATAGCATTACTTTGAGAGACGCCGTTTCCTCGATTGCTGAAGAGTTAGGAGTACCACTACCAGATAAAATCCGCTTCTTTAGGTACATTTGCTGATTGATTATTCTCAGCTCATTTAGATGGATATAATATACAATGTTGTGACTGTGCATCCGAATTTCAAAATATTTCTGAAATTGTGGACAAAATCTTCTATGATTGAGTGGTTTTAGCAAATTGTTGAAGAATGGTGTCTTCATATGATTGAAATGTTGATGGGATTATAGGTCACAGATGCAGACAATCATTACAAAAGCATGTACCGAGCTTGGCATAAAGCCCATTCCTAGTAAAAGGGTTGGTAGTTATGAATTTATAGGTGTTTTCTTCGATTATGTTTCTTTATGAAATTTGATTGCATTTAGGATATGAATTACACTCGCTCAAGAGTTTTCATTGTTCCCCTCCCACCAGTGTCTTTCCCTGCTTTTGTGGCTGGAAGAGCGATATGAGACCGTTTATACGCGTCATCCCGGTTTTCAGAAAGGATCTAAGCCCCTTCTTGCATTAGATAATCCATTTCCAATGGAACTTCCAGAGAATCTTTTTGGGGAGAGGTGGGCATTTGTTCAATTGCCTTTTTCAGGTATACCAATTGTTTTTCTTCCTTTGTTTGGCATTGATTCTAAACATGGCTGAAGATTTGCTGCTTTATCTTACAAAGGGATGTTGGTTTGTTGTTCTTATTGTTTCTTCTATAACTAAATGGTCTTCCATTAATTTTCAGCTGTTCAAGAGGAGATCTCAAACTTAAAGGAAACTTTCATGTTTGGTTCAAGTCTTGATCTGGATTTACTTGGGATCGAAATTGATGATAAGACAATGATCCCTGGGTTGTCTGTTGCAACTTCACGAGCTCAACCATTGGCAGGTATGCCTCCACTCTATAATCATTGAGAGTTGTGGAGTTCTCAAACGTAGGCAAATAAATGAGTCGCAACAAATTCCGTTATCTCTCTAATTTTGATCTTCCCCAATTGTTATTCCCTAAGATTTTATGTGCCTCTACCATTACCATTGTAGAATAATATAATTGGTCAAATTACAAGTTTAGTCCTTCAATTGTGATGTTTGTGTTTAGTAGATATTTGAATACTTTGTGTCCAATATGTTCTAAATGGTAAAGGTGTCTAACGCATCATGAGCTTTCAATTTTATGCTACCTAACCTACTCAACATTTTAAAACATTGTTAAATTTATTAGATAAAAAATATGGGTCTTAAACTTTTAATATCATGTTTAGTAAATTCATAAAACTTAAAAAGGTGTCAAGGTAATATATTAGACACGAAATTTTGAAAATTTAGAGACTTTATGACACAAAAGTAAAAAGATCCTCGACTTTAAATCATGGACTTTCTTGGACGCAGATAATTTTATAGATACGTTGCATCACTAAGATTTTGTGATGTAGGAAATTTCGATCTGCTGTTTCCTACATGTTACCCAAACAATACCTTGCAGCCATCACATTTGATCTCTTTTTTGCGTATTCCACAGCTTGGATGAATGGAATGGAAGTATATTCAGTTGAAGCCGATACATCTCGCGCTTCTTTGATTCTATCTGTTGGGATTGCGACTCGATATGTCTACGCTACCTATAAAAAAACTCCAGTGACAAGTGCGGAGGCCGAAGCTTGGGAAGCAGCTAAGAAGGCTTGTGGAGGCTTGCATTTTCTTGCCATACAAGACGATTTGGATTCAGAGGACTGTGTTGGGTTCTGGCTTCTACTAGACTTGCCACCCCCGCCAGTATAACTGGTGAAGTTATTTTTTTAAAACAACGTAGGTAGTCATGTAAAGCATGTTAAATCTTGTAACTTTAGTATTTGTTGATTGTACAAACAATGCAAATTATAGTATGTGGTGCCCTTTTCGGAGATGGTGTTGGGGCCATTGTGCATAGTTGAGCACTGAACTTCAACAAAGCCTAAGGAATGAACTCGAAAATGGAATACATTTTAGATACTGCAAAACTTGTATCTCCTTATCCATCAATTTTGGTTGATCAGAAGTTATAAATTCCTTCTATGTCAATACTTCTGCATGATCAAATAATGGAAAGATTTGTTTCTCAGACAAGACATCAAAGTTTGAGAAGATTTTCAATTGGCA

mRNA sequence

ATGGCGACCTTAAGCTTCAATCCCACCAGAATAAGAACCCTAGGGGGTCTTCACTTTACCAAATCCAAACCTATTTATTCCCCATTTTCACAATCAATCAAAACCGCAAACAGATTCTCAGCCAATGGCCGTATCAGTCAGCAACCACTACCTCGTTTTAGATCAAATTCTGTATCAGAAAGCTCGGTCACGGCGCCGGAAGAGGTGGAATTGAACGAGGATGAGGATGACCCGACCTTGGAGATGGCCTATTTGGATTCGGAAACTGATCCGGAGAGTATTACGGAGTGGGAGTTGGATTTCTGCTCCAGACCTATTTTGGATATCAGAGGGAAGAAGGTGTGGGAGCTTGTAGTCTGTGATAACTCGCTCTCTCTTCAATACACGAAATATTTTCCTAACAATGTTATTAATAGCATTACTTTGAGAGACGCCGTTTCCTCGATTGCTGAAGAGTTAGGAGTACCACTACCAGATAAAATCCGCTTCTTTAGGTCACAGATGCAGACAATCATTACAAAAGCATGTACCGAGCTTGGCATAAAGCCCATTCCTAGTAAAAGGTGTCTTTCCCTGCTTTTGTGGCTGGAAGAGCGATATGAGACCGTTTATACGCGTCATCCCGGTTTTCAGAAAGGATCTAAGCCCCTTCTTGCATTAGATAATCCATTTCCAATGGAACTTCCAGAGAATCTTTTTGGGGAGAGGTGGGCATTTGTTCAATTGCCTTTTTCAGCTGTTCAAGAGGAGATCTCAAACTTAAAGGAAACTTTCATGTTTGGTTCAAGTCTTGATCTGGATTTACTTGGGATCGAAATTGATGATAAGACAATGATCCCTGGGTTGTCTGTTGCAACTTCACGAGCTCAACCATTGGCAGCTTGGATGAATGGAATGGAAGTATATTCAGTTGAAGCCGATACATCTCGCGCTTCTTTGATTCTATCTGTTGGGATTGCGACTCGATATGTCTACGCTACCTATAAAAAAACTCCAGTGACAAGTGCGGAGGCCGAAGCTTGGGAAGCAGCTAAGAAGGCTTGTGGAGGCTTGCATTTTCTTGCCATACAAGACGATTTGGATTCAGAGGACTGTGTTGGGTTCTGGCTTCTACTAGACTTGCCACCCCCGCCAGTATAA

Coding sequence (CDS)

ATGGCGACCTTAAGCTTCAATCCCACCAGAATAAGAACCCTAGGGGGTCTTCACTTTACCAAATCCAAACCTATTTATTCCCCATTTTCACAATCAATCAAAACCGCAAACAGATTCTCAGCCAATGGCCGTATCAGTCAGCAACCACTACCTCGTTTTAGATCAAATTCTGTATCAGAAAGCTCGGTCACGGCGCCGGAAGAGGTGGAATTGAACGAGGATGAGGATGACCCGACCTTGGAGATGGCCTATTTGGATTCGGAAACTGATCCGGAGAGTATTACGGAGTGGGAGTTGGATTTCTGCTCCAGACCTATTTTGGATATCAGAGGGAAGAAGGTGTGGGAGCTTGTAGTCTGTGATAACTCGCTCTCTCTTCAATACACGAAATATTTTCCTAACAATGTTATTAATAGCATTACTTTGAGAGACGCCGTTTCCTCGATTGCTGAAGAGTTAGGAGTACCACTACCAGATAAAATCCGCTTCTTTAGGTCACAGATGCAGACAATCATTACAAAAGCATGTACCGAGCTTGGCATAAAGCCCATTCCTAGTAAAAGGTGTCTTTCCCTGCTTTTGTGGCTGGAAGAGCGATATGAGACCGTTTATACGCGTCATCCCGGTTTTCAGAAAGGATCTAAGCCCCTTCTTGCATTAGATAATCCATTTCCAATGGAACTTCCAGAGAATCTTTTTGGGGAGAGGTGGGCATTTGTTCAATTGCCTTTTTCAGCTGTTCAAGAGGAGATCTCAAACTTAAAGGAAACTTTCATGTTTGGTTCAAGTCTTGATCTGGATTTACTTGGGATCGAAATTGATGATAAGACAATGATCCCTGGGTTGTCTGTTGCAACTTCACGAGCTCAACCATTGGCAGCTTGGATGAATGGAATGGAAGTATATTCAGTTGAAGCCGATACATCTCGCGCTTCTTTGATTCTATCTGTTGGGATTGCGACTCGATATGTCTACGCTACCTATAAAAAAACTCCAGTGACAAGTGCGGAGGCCGAAGCTTGGGAAGCAGCTAAGAAGGCTTGTGGAGGCTTGCATTTTCTTGCCATACAAGACGATTTGGATTCAGAGGACTGTGTTGGGTTCTGGCTTCTACTAGACTTGCCACCCCCGCCAGTATAA

Protein sequence

MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSESSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVCDNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFVQLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGMEVYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDLDSEDCVGFWLLLDLPPPPV

Homology

[Close]

BLAST of CsaV3_7G030960 vs. NCBI nr
Match: XP_004135937.1 (PREDICTED: uncharacterized protein LOC101208052 [Cucumis sativus] >KGN45119.1 hypothetical protein Csa_7G427090 [Cucumis sativus])

HSP 1 Score: 761.1 bits (1964), Expect = 1.7e-216
Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60
           MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE
Sbjct: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60

Query: 61  SSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120
           SSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC
Sbjct: 61  SSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELG 180
           DNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELG
Sbjct: 121 DNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240

Query: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGME
Sbjct: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of CsaV3_7G030960 vs. NCBI nr
Match: XP_008461309.1 (PREDICTED: uncharacterized protein LOC103499936 [Cucumis melo])

HSP 1 Score: 740.0 bits (1909), Expect = 4.2e-210
Identity = 368/379 (97.10%), Postives = 374/379 (98.68%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60
           MATLSFNPTRIRTL GLHFTKSKPI SPFSQSIKTANRFSANGRISQQPL RF+SNSVSE
Sbjct: 1   MATLSFNPTRIRTLVGLHFTKSKPISSPFSQSIKTANRFSANGRISQQPLRRFQSNSVSE 60

Query: 61  SSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120
           SSV+ PEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC
Sbjct: 61  SSVSVPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELG 180
           DNSLSLQYTKYFPNNVINSITLRDA+SSIAEELGVPLP+KIRFFRSQMQTIITKACTELG
Sbjct: 121 DNSLSLQYTKYFPNNVINSITLRDAISSIAEELGVPLPEKIRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240

Query: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFSAVQEEISNLKETFMFGSSLDLDLLGI+IDDKTMIPGLSVATSRAQPLAAWMNGME
Sbjct: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIDIDDKTMIPGLSVATSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSRA LILSVGIATRYVYATYKKTPVT+AEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of CsaV3_7G030960 vs. NCBI nr
Match: XP_023004563.1 (protein TAB2 homolog, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 677.2 bits (1746), Expect = 3.3e-191
Identity = 338/383 (88.25%), Postives = 353/383 (92.17%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60
           MATLSFNPTRIRT GGLH  K KP   PF QSIKTA RFSA+ RI+QQ L RFRSNSVSE
Sbjct: 1   MATLSFNPTRIRTPGGLHLCKPKPRSLPFPQSIKTAKRFSADFRINQQLLHRFRSNSVSE 60

Query: 61  SSVTAPEEVELNED----EDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWE 120
           SS++ PEE          EDDPTLE+AYLDSETDPESITEWELDFCSRPILDIRGKKVWE
Sbjct: 61  SSISVPEEXXXXXXXXXAEDDPTLELAYLDSETDPESITEWELDFCSRPILDIRGKKVWE 120

Query: 121 LVVCDNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKAC 180
           LV CDNSLSLQYTKYFPNNVINSITLRDA+SSI EELGVPLP+KIRFFRSQMQTIITKAC
Sbjct: 121 LVACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKAC 180

Query: 181 TELGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGER 240
           TELG+KPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELP+NLFGER
Sbjct: 181 TELGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGER 240

Query: 241 WAFVQLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWM 300
           WAFVQLPFSAVQEE+SNL  +FMFGSSLDLDLLGIEIDD +MIPGLSVA+SRAQPLAAWM
Sbjct: 241 WAFVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNSMIPGLSVASSRAQPLAAWM 300

Query: 301 NGMEVYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAI 360
           NGMEVYSVEADTSRA LILSVGI+TRYVYATYKK PVT+AEAEAWEAAKKACGGLHFLAI
Sbjct: 301 NGMEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGGLHFLAI 360

Query: 361 QDDLDSEDCVGFWLLLDLPPPPV 380
           QDDLDSEDCVGFWLLLDLPPPPV
Sbjct: 361 QDDLDSEDCVGFWLLLDLPPPPV 383

[Close]

BLAST of CsaV3_7G030960 vs. NCBI nr
Match: XP_022145109.1 (protein TAB2 homolog, chloroplastic [Momordica charantia])

HSP 1 Score: 668.7 bits (1724), Expect = 1.2e-188
Identity = 335/379 (88.39%), Postives = 350/379 (92.35%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60
           MATLSFNP RIRT   LH  K  P  SP SQ IKTANRF  N RI+QQ L RF SNSVSE
Sbjct: 1   MATLSFNPARIRT-PALHIRKLNPSSSPSSQPIKTANRFPPNCRINQQQLRRFLSNSVSE 60

Query: 61  SSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120
           SSV+APEEVE+     DPTLE+AYLD +TD ESITEWELDFCSRPILDIRGKKVWELV C
Sbjct: 61  SSVSAPEEVEVXXXXXDPTLELAYLDPDTDTESITEWELDFCSRPILDIRGKKVWELVAC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELG 180
           DNSLSLQYTKYFPNNVINSITLRDA++SI+EELGVPLP+KIRFFRSQMQTIITKACTELG
Sbjct: 121 DNSLSLQYTKYFPNNVINSITLRDAIASISEELGVPLPEKIRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240

Query: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFS VQEE+SNLK TFMFGSSLDLDLLGIEID+KTMIPGLSVA+SRAQPLAAWMNGME
Sbjct: 241 QLPFSVVQEEVSNLKATFMFGSSLDLDLLGIEIDNKTMIPGLSVASSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSR+SLILSVGI+TRYVYATYKKTPV +AEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRSSLILSVGISTRYVYATYKKTPVATAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 378

[Close]

BLAST of CsaV3_7G030960 vs. NCBI nr
Match: XP_022959769.1 (protein TAB2 homolog, chloroplastic [Cucurbita moschata])

HSP 1 Score: 650.2 bits (1676), Expect = 4.3e-183
Identity = 328/381 (86.09%), Postives = 340/381 (89.24%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSV-- 60
           MATLSFNPTRIRT GGLH  K KP   PFSQSIKT  RFSA+ RI+QQ L RFRSNSV  
Sbjct: 1   MATLSFNPTRIRTPGGLHLCKPKPRSLPFSQSIKTPKRFSADFRINQQLLRRFRSNSVXX 60

Query: 61  SESSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120
                               TLE+AYLDSETDPESITEWELDFCSRPILDIRGKKVWELV
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXTLELAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120

Query: 121 VCDNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTE 180
            CDNSLSLQYTKYFPNNVINSITLRDA+SSI EELGVPLP+KIRFFRSQMQTIITKACTE
Sbjct: 121 ACDNSLSLQYTKYFPNNVINSITLRDAISSITEELGVPLPEKIRFFRSQMQTIITKACTE 180

Query: 181 LGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWA 240
           LG+KPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELP+NLFGERWA
Sbjct: 181 LGVKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGERWA 240

Query: 241 FVQLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNG 300
           FVQLPFSAVQEE+SNL  +FMFGSSLDLDLLGIEIDD TMIPGLSVA+SRAQPLAAWMNG
Sbjct: 241 FVQLPFSAVQEEVSNLNASFMFGSSLDLDLLGIEIDDNTMIPGLSVASSRAQPLAAWMNG 300

Query: 301 MEVYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQD 360
           MEVYSVEADTSRA LILSVGI+TRYVYATYKK PVT+AEAEAWEAAKKACGGLHFLAIQD
Sbjct: 301 MEVYSVEADTSRACLILSVGISTRYVYATYKKNPVTTAEAEAWEAAKKACGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 380
           DLDSEDCVGFWLLLDLPPPPV
Sbjct: 361 DLDSEDCVGFWLLLDLPPPPV 381

[Close]

BLAST of CsaV3_7G030960 vs. TAIR10
Match: AT3G08010.1 (RNA binding)

HSP 1 Score: 546.2 bits (1406), Expect = 1.6e-155
Identity = 274/381 (71.92%), Postives = 318/381 (83.46%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60
           MATL FN  RI+T       K     S F++ IKT + FS+   + +    RF S S+ E
Sbjct: 1   MATLGFNTRRIQTPSLPRIPKP----SSFTKPIKTHHLFSSETLLKR---CRFVSRSLPE 60

Query: 61  S--SVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120
           S  S+T  +EV    +EDDPT E++YLD E+D +SI EWELDFCSRPILD RGKK+WELV
Sbjct: 61  SSLSITKEQEVANEVEEDDPTSELSYLDPESDADSIKEWELDFCSRPILDSRGKKIWELV 120

Query: 121 VCDNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTE 180
           VCD SLSLQ TKYFPNNVINSITL+DA+ +I ++LGVPLP+KIRFFRSQMQTIITKAC E
Sbjct: 121 VCDASLSLQVTKYFPNNVINSITLKDAIVTITQDLGVPLPEKIRFFRSQMQTIITKACKE 180

Query: 181 LGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWA 240
           L IK +PSKRCLSL LWL+ERY+TVYTRHPGFQKGS PLL+LDNPFPM LPENLFGE+WA
Sbjct: 181 LAIKAVPSKRCLSLFLWLQERYDTVYTRHPGFQKGSLPLLSLDNPFPMNLPENLFGEKWA 240

Query: 241 FVQLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNG 300
           FVQLP+SAV+EEIS+  E F+FG+SLDLDLLGIE+D+ T+IPGLSVATSRA+PLAAWMNG
Sbjct: 241 FVQLPYSAVREEISDFDEKFVFGASLDLDLLGIEVDENTLIPGLSVATSRAKPLAAWMNG 300

Query: 301 MEVYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQD 360
           +EV S+EAD+S+  LILSVGIATRYVYATYKKTPVT+ EAEAWE+AKK  GGLHFLAIQD
Sbjct: 301 LEVCSIEADSSKGCLILSVGIATRYVYATYKKTPVTTDEAEAWESAKKTSGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 380
           DLDS+DCVGFWLL+DLPPPPV
Sbjct: 361 DLDSDDCVGFWLLIDLPPPPV 374

[Close]

BLAST of CsaV3_7G030960 vs. Swiss-Prot
Match: sp|Q9SFB3|ATAB2_ARATH (Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATAB2 PE=2 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 2.9e-154
Identity = 274/381 (71.92%), Postives = 318/381 (83.46%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60
           MATL FN  RI+T       K     S F++ IKT + FS+   + +    RF S S+ E
Sbjct: 1   MATLGFNTRRIQTPSLPRIPKP----SSFTKPIKTHHLFSSETLLKR---CRFVSRSLPE 60

Query: 61  S--SVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120
           S  S+T  +EV    +EDDPT E++YLD E+D +SI EWELDFCSRPILD RGKK+WELV
Sbjct: 61  SSLSITKEQEVANEVEEDDPTSELSYLDPESDADSIKEWELDFCSRPILDSRGKKIWELV 120

Query: 121 VCDNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTE 180
           VCD SLSLQ TKYFPNNVINSITL+DA+ +I ++LGVPLP+KIRFFRSQMQTIITKAC E
Sbjct: 121 VCDASLSLQVTKYFPNNVINSITLKDAIVTITQDLGVPLPEKIRFFRSQMQTIITKACKE 180

Query: 181 LGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWA 240
           L IK +PSKRCLSL LWL+ERY+TVYTRHPGFQKGS PLL+LDNPFPM LPENLFGE+WA
Sbjct: 181 LAIKAVPSKRCLSLFLWLQERYDTVYTRHPGFQKGSLPLLSLDNPFPMNLPENLFGEKWA 240

Query: 241 FVQLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNG 300
           FVQLP+SAV+EEIS+  E F+FG+SLDLDLLGIE+D+ T+IPGLSVATSRA+PLAAWMNG
Sbjct: 241 FVQLPYSAVREEISDFDEKFVFGASLDLDLLGIEVDENTLIPGLSVATSRAKPLAAWMNG 300

Query: 301 MEVYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQD 360
           +EV S+EAD+S+  LILSVGIATRYVYATYKKTPVT+ EAEAWE+AKK  GGLHFLAIQD
Sbjct: 301 LEVCSIEADSSKGCLILSVGIATRYVYATYKKTPVTTDEAEAWESAKKTSGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 380
           DLDS+DCVGFWLL+DLPPPPV
Sbjct: 361 DLDSDDCVGFWLLIDLPPPPV 374

[Close]

BLAST of CsaV3_7G030960 vs. Swiss-Prot
Match: sp|B4FTR7|ATAB2_MAIZE (Protein TAB2 homolog, chloroplastic OS=Zea mays OX=4577 GN=TAB2 PE=2 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 1.9e-137
Identity = 224/313 (71.57%), Postives = 278/313 (88.82%), Query Frame = 0


Query: 67  EEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVCDNSLSL 126
           EEVE  E++ DP  E+ YLD + DPESI EWELDFCSRPILD RGKKVWELVVCD +LSL
Sbjct: 79  EEVEA-ENKVDPQAEVCYLDPDVDPESIREWELDFCSRPILDARGKKVWELVVCDATLSL 138

Query: 127 QYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELGIKPIPS 186
           Q+T+YFPNN INS+TLRDA++S++E LGVP+PD++RFFRSQMQTIIT+AC +LG+K +PS
Sbjct: 139 QFTRYFPNNAINSVTLRDALASVSEALGVPMPDRVRFFRSQMQTIITRACGDLGVKAVPS 198

Query: 187 KRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFVQLPFSA 246
           +RC+SLLLWLEERYE VY+RHPGFQ G++PLLALDNPFP  LPENLFG++WAFVQLPFSA
Sbjct: 199 RRCVSLLLWLEERYEVVYSRHPGFQAGTRPLLALDNPFPTTLPENLFGDKWAFVQLPFSA 258

Query: 247 VQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGMEVYSVEA 306
           V+EE+ +L+  + FG+ LDL+LLG E+DD T++PG++V +SRA+PLAAWMNG+E+ ++EA
Sbjct: 259 VREEVESLERRYAFGAGLDLELLGFELDDTTLVPGVAVESSRAKPLAAWMNGLEICAMEA 318

Query: 307 DTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDLDSEDCV 366
           DT RASLILS G++TRYVY+ Y+KT  ++ EAEAWEAAKKACGGLHFLAIQ++L+S+ CV
Sbjct: 319 DTGRASLILSAGVSTRYVYSGYQKTAASTQEAEAWEAAKKACGGLHFLAIQENLNSDGCV 378

Query: 367 GFWLLLDLPPPPV 380
           GFWLLLDLPPPPV
Sbjct: 379 GFWLLLDLPPPPV 390

[Close]

BLAST of CsaV3_7G030960 vs. Swiss-Prot
Match: sp|Q6K9C1|ATAB2_ORYSJ (Protein TAB2 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0610800 PE=2 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 2.8e-125
Identity = 206/303 (67.99%), Postives = 252/303 (83.17%), Query Frame = 0


Query: 77  DPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVCDNSLSLQYTKYFPNNV 136
           DP  E+ YLD E D E I EWELDFCSRPI              D +LSLQ+T++FPN  
Sbjct: 90  DPLAEVCYLDPEADAEGIREWELDFCSRPIXXXXXXXXXXXXXXDATLSLQFTRFFPNTS 149

Query: 137 INSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELGIKPIPSKRCLSLLLWL 196
           INS+TLRDA++S+A  LGVPLPD+ RFFRSQMQTII++AC ELG+K +PS+RC+SLLLWL
Sbjct: 150 INSVTLRDALASVATSLGVPLPDRARFFRSQMQTIISRACNELGVKAVPSRRCVSLLLWL 209

Query: 197 EERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFVQLPFSAVQEEISNLKE 256
           EERYETVY+RHPGFQ G+KPLL LDNPFP  LPENLFG++WAFVQLPFSAV+EE+ +L+ 
Sbjct: 210 EERYETVYSRHPGFQSGTKPLLTLDNPFPTSLPENLFGDKWAFVQLPFSAVREEVESLER 269

Query: 257 TFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGMEVYSVEADTSRASLILS 316
            + FG+ LDLDLLG E+D+ T+IPG++V +SRA+PLAAWMNG+E+ S+E DT RA+LILS
Sbjct: 270 RYAFGAGLDLDLLGFELDENTLIPGVAVESSRAKPLAAWMNGLEICSMEVDTGRANLILS 329

Query: 317 VGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDLDSEDCVGFWLLLDLPP 376
            G++TRYVYA Y+K+  T+ EAEAWEAAKKACGGLHFLAIQ++L+S+ CVGFWLLLDLPP
Sbjct: 330 AGVSTRYVYAGYQKSAATTQEAEAWEAAKKACGGLHFLAIQENLNSDGCVGFWLLLDLPP 389

Query: 377 PPV 380
           PPV
Sbjct: 390 PPV 392

[Close]

BLAST of CsaV3_7G030960 vs. TrEMBL
Match: tr|A0A0A0K8A7|A0A0A0K8A7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G427090 PE=4 SV=1)

HSP 1 Score: 761.1 bits (1964), Expect = 1.2e-216
Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60
           MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE
Sbjct: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60

Query: 61  SSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120
           SSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC
Sbjct: 61  SSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELG 180
           DNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELG
Sbjct: 121 DNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240

Query: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGME
Sbjct: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of CsaV3_7G030960 vs. TrEMBL
Match: tr|A0A1S3CEE7|A0A1S3CEE7_CUCME (uncharacterized protein LOC103499936 OS=Cucumis melo OX=3656 GN=LOC103499936 PE=4 SV=1)

HSP 1 Score: 740.0 bits (1909), Expect = 2.7e-210
Identity = 368/379 (97.10%), Postives = 374/379 (98.68%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFTKSKPIYSPFSQSIKTANRFSANGRISQQPLPRFRSNSVSE 60
           MATLSFNPTRIRTL GLHFTKSKPI SPFSQSIKTANRFSANGRISQQPL RF+SNSVSE
Sbjct: 1   MATLSFNPTRIRTLVGLHFTKSKPISSPFSQSIKTANRFSANGRISQQPLRRFQSNSVSE 60

Query: 61  SSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120
           SSV+ PEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC
Sbjct: 61  SSVSVPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVC 120

Query: 121 DNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELG 180
           DNSLSLQYTKYFPNNVINSITLRDA+SSIAEELGVPLP+KIRFFRSQMQTIITKACTELG
Sbjct: 121 DNSLSLQYTKYFPNNVINSITLRDAISSIAEELGVPLPEKIRFFRSQMQTIITKACTELG 180

Query: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240
           IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV
Sbjct: 181 IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFV 240

Query: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGME 300
           QLPFSAVQEEISNLKETFMFGSSLDLDLLGI+IDDKTMIPGLSVATSRAQPLAAWMNGME
Sbjct: 241 QLPFSAVQEEISNLKETFMFGSSLDLDLLGIDIDDKTMIPGLSVATSRAQPLAAWMNGME 300

Query: 301 VYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDL 360
           VYSVEADTSRA LILSVGIATRYVYATYKKTPVT+AEAEAWEAAKKACGGLHFLAIQDDL
Sbjct: 301 VYSVEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQDDL 360

Query: 361 DSEDCVGFWLLLDLPPPPV 380
           DSEDCVGFWLLLDLPPPPV
Sbjct: 361 DSEDCVGFWLLLDLPPPPV 379

[Close]

BLAST of CsaV3_7G030960 vs. TrEMBL
Match: tr|A0A067JPT1|A0A067JPT1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25397 PE=4 SV=1)

HSP 1 Score: 596.7 bits (1537), Expect = 3.8e-167
Identity = 300/382 (78.53%), Postives = 334/382 (87.43%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFTKSKPIY--SPFSQSIKTANRFSANGRISQQPLPRFRSNSV 60
           MATL FNPTRI           KPI+  + FS+S K + R       +      F+ N++
Sbjct: 1   MATLIFNPTRI---------PQKPIFKITSFSKSTKISLRCFLKPTKTNHKYHCFQPNTI 60

Query: 61  SESSVTAPEEVEL-NEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWEL 120
           S+ SV+  EEVE+ N +EDDPT EM+YLD ETDPESI EWELDFCSRPILDIRGKKVWEL
Sbjct: 61  SKLSVSTQEEVEVENYEEDDPTAEMSYLDPETDPESIIEWELDFCSRPILDIRGKKVWEL 120

Query: 121 VVCDNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACT 180
           VVCD+SLSLQYTKYFPNNVINSITL+DA+ SI+E+LGVPLP+KIRFFRSQMQTIITKAC 
Sbjct: 121 VVCDDSLSLQYTKYFPNNVINSITLKDAILSISEDLGVPLPEKIRFFRSQMQTIITKACK 180

Query: 181 ELGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERW 240
           EL IKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGE+W
Sbjct: 181 ELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKW 240

Query: 241 AFVQLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMN 300
           AFVQLPFSAVQ E S+L+ +FMFG+SLDLDLLGIEI DKT+IPGL+VA+SRA+PLAAWMN
Sbjct: 241 AFVQLPFSAVQREASSLETSFMFGASLDLDLLGIEIGDKTLIPGLAVASSRAKPLAAWMN 300

Query: 301 GMEVYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQ 360
           G+EVYS+EADTSRA LILSVGI+TRY+YATYKKTPVT+AEAEAWEAAKKACGGLHFLAIQ
Sbjct: 301 GLEVYSIEADTSRACLILSVGISTRYIYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQ 360

Query: 361 DDLDSEDCVGFWLLLDLPPPPV 380
           +DLDSEDCVGFWLLLDLPPPPV
Sbjct: 361 EDLDSEDCVGFWLLLDLPPPPV 373

[Close]

BLAST of CsaV3_7G030960 vs. TrEMBL
Match: tr|F6HBA5|F6HBA5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g00650 PE=4 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 6.0e-165
Identity = 287/381 (75.33%), Postives = 334/381 (87.66%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFTKSKPIY--SPFSQSIKTANRFSANGRISQQPLPRFRSNSV 60
           MA LS NPT+I T         KPIY  +  +   KT  +F  N   +   L  FR +SV
Sbjct: 1   MAGLSLNPTKITT---PTLQSHKPIYRFNSLTNPTKTQLKFPTNPAKTHPKLLHFRHSSV 60

Query: 61  SESSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELV 120
           SESSV+ P+EVE++++EDDPT EM YLD ETDPESI+EWELDFCSRPILDIRGKK+WEL+
Sbjct: 61  SESSVSVPKEVEVDDEEDDPTSEMNYLDRETDPESISEWELDFCSRPILDIRGKKIWELL 120

Query: 121 VCDNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTE 180
           VCD+SLSLQYTKYFPNNVINS+TL++A+ SI++EL VPLP+KIRFFRSQMQTI+TKAC E
Sbjct: 121 VCDSSLSLQYTKYFPNNVINSVTLKNAIESISDELDVPLPEKIRFFRSQMQTIVTKACKE 180

Query: 181 LGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWA 240
           LGIKPIPSKRCLSL+LWLEERYETVYTRHPGFQ+GSKPLL LDNPFPM+LPENLFGE+WA
Sbjct: 181 LGIKPIPSKRCLSLILWLEERYETVYTRHPGFQQGSKPLLTLDNPFPMQLPENLFGEKWA 240

Query: 241 FVQLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNG 300
           FVQLPFSAVQEE+S+L+   +FG+SLDLDLLGIE+D  T+IPGL+VA+SRA+PLAAWMNG
Sbjct: 241 FVQLPFSAVQEEVSSLETRLVFGASLDLDLLGIEVDANTLIPGLAVASSRAKPLAAWMNG 300

Query: 301 MEVYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQD 360
           +EV S+EADT+RA LILSVGI+TRY+YATYKKTPVT++EAEAWEAAKKACGGLHFLAIQD
Sbjct: 301 LEVCSIEADTARACLILSVGISTRYIYATYKKTPVTTSEAEAWEAAKKACGGLHFLAIQD 360

Query: 361 DLDSEDCVGFWLLLDLPPPPV 380
           DL+S+DCVGFWLLLDLPPPPV
Sbjct: 361 DLNSDDCVGFWLLLDLPPPPV 378

[Close]

BLAST of CsaV3_7G030960 vs. TrEMBL
Match: tr|A0A2N9GIK0|A0A2N9GIK0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30178 PE=4 SV=1)

HSP 1 Score: 587.0 bits (1512), Expect = 3.0e-164
Identity = 294/381 (77.17%), Postives = 331/381 (86.88%), Query Frame = 0


Query: 1   MATLSFNPTRIRTLGGLHFTKSKPI--YSPFSQSIKTANRFSANGRISQQPLP-RFRSNS 60
           +A+LSFN TRIRT         KPI  ++   +  K +  FS       Q  P + RS+S
Sbjct: 50  LASLSFNATRIRT---PTLQSHKPISNFTSLIKPRKISYNFSTKPSKRNQSKPHQIRSSS 109

Query: 61  VSESSVTAPEEVELNEDEDDPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWEL 120
           VSESSV AP+EVE +E+EDDPT E+ YLD ETDP SI+EWELDFCSRPILDIRGKKVWEL
Sbjct: 110 VSESSVFAPKEVEFDEEEDDPTAELCYLDPETDPGSISEWELDFCSRPILDIRGKKVWEL 169

Query: 121 VVCDNSLSLQYTKYFPNNVINSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACT 180
           VVCD+SLSLQYTKYFPNNVINS+TL+DA+ SI+++LGVPLP+KIRFFRSQMQTIITKAC 
Sbjct: 170 VVCDSSLSLQYTKYFPNNVINSVTLKDAIVSISDDLGVPLPEKIRFFRSQMQTIITKACK 229

Query: 181 ELGIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERW 240
           ELG KP+PSKRCLSLLLWLEERYETVY RHPGFQKGSKPLLALDNPFPMELPENLFGE+W
Sbjct: 230 ELGTKPVPSKRCLSLLLWLEERYETVYMRHPGFQKGSKPLLALDNPFPMELPENLFGEKW 289

Query: 241 AFVQLPFSAVQEEISNLKETFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMN 300
           AFVQLP SAV+EEIS+L+   +FG+ LDLDLLGIEIDDKT+IPGL+VA+SRA PLAAWMN
Sbjct: 290 AFVQLPISAVREEISSLESRLVFGAGLDLDLLGIEIDDKTLIPGLAVASSRATPLAAWMN 349

Query: 301 GMEVYSVEADTSRASLILSVGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQ 360
           G+EV S+EAD SRASLILSVGI+TRYVYATYKKTPVT+ EAEAWEAAKKACGGLHFLAIQ
Sbjct: 350 GLEVSSIEADLSRASLILSVGISTRYVYATYKKTPVTTNEAEAWEAAKKACGGLHFLAIQ 409

Query: 361 DDLDSEDCVGFWLLLDLPPPP 379
           +DLDS+DCVGFWLLLDLPPPP
Sbjct: 410 EDLDSDDCVGFWLLLDLPPPP 427

The following BLAST results are available for this feature:

BLAST of CsaV3_7G030960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135937.1	1.7e-216	100.00	PREDICTED: uncharacterized protein LOC101208052 [Cucumis sativus] >KGN45119.1 hy...	[more]
XP_008461309.1	4.2e-210	97.10	PREDICTED: uncharacterized protein LOC103499936 [Cucumis melo]	[more]
XP_023004563.1	3.3e-191	88.25	protein TAB2 homolog, chloroplastic isoform X2 [Cucurbita maxima]	[more]
XP_022145109.1	1.2e-188	88.39	protein TAB2 homolog, chloroplastic [Momordica charantia]	[more]
XP_022959769.1	4.3e-183	86.09	protein TAB2 homolog, chloroplastic [Cucurbita moschata]	[more]

BLAST of CsaV3_7G030960 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G08010.1	1.6e-155	71.92	RNA binding	[more]

BLAST of CsaV3_7G030960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SFB3\|ATAB2_ARATH	2.9e-154	71.92	Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATAB2 PE=...	[more]
sp\|B4FTR7\|ATAB2_MAIZE	1.9e-137	71.57	Protein TAB2 homolog, chloroplastic OS=Zea mays OX=4577 GN=TAB2 PE=2 SV=1	[more]
sp\|Q6K9C1\|ATAB2_ORYSJ	2.8e-125	67.99	Protein TAB2 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]

BLAST of CsaV3_7G030960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8A7\|A0A0A0K8A7_CUCSA	1.2e-216	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G427090 PE=4 SV=1	[more]
tr\|A0A1S3CEE7\|A0A1S3CEE7_CUCME	2.7e-210	97.10	uncharacterized protein LOC103499936 OS=Cucumis melo OX=3656 GN=LOC103499936 PE=...	[more]
tr\|A0A067JPT1\|A0A067JPT1_JATCU	3.8e-167	78.53	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25397 PE=4 SV=1	[more]
tr\|F6HBA5\|F6HBA5_VITVI	6.0e-165	75.33	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g00650 PE=4 SV=...	[more]
tr\|A0A2N9GIK0\|A0A2N9GIK0_FAGSY	3.0e-164	77.17	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30178 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009472	Tab2-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0006412	translation
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0016556	mRNA modification
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G030960.1	CsaV3_7G030960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009472	Tab2-like	PFAM	PF06485	DUF1092	coord: 97..371 e-value: 2.9E-90 score: 302.3
IPR009472	Tab2-like	PANTHER	PTHR34556	FAMILY NOT NAMED	coord: 41..379
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..77
None	No IPR available	PANTHER	PTHR34556:SF2	F17A17.35 PROTEIN	coord: 41..379

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G030960	CSPI07G19160	Wild cucumber (PI 183967)	cpicucB414
CsaV3_7G030960	Cucsa.127960	Cucumber (Gy14) v1	cgycucB181
CsaV3_7G030960	CmaCh08G005210	Cucurbita maxima (Rimu)	cmacucB1084
CsaV3_7G030960	CmoCh08G005120	Cucurbita moschata (Rifu)	cmocucB1066
CsaV3_7G030960	Cp4.1LG17g08070	Cucurbita pepo (Zucchini)	cpecucB0422
CsaV3_7G030960	CsGy7G017510	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G030960	Carg13436	Silver-seed gourd	carcucB0486
CsaV3_7G030960	Cla015250	Watermelon (97103) v1	cucwmB577
CsaV3_7G030960	MELO3C023560	Melon (DHL92) v3.5.1	cucmeB537
CsaV3_7G030960	ClCG09G004060	Watermelon (Charleston Gray)	cucwcgB537
CsaV3_7G030960	Lsi02G025640	Bottle gourd (USVL1VR-Ls)	cuclsiB538
CsaV3_7G030960	MELO3C023560.2	Melon (DHL92) v3.6.1	cucmedB525
CsaV3_7G030960	Cla97C09G166320	Watermelon (97103) v2	cucwmbB584
CsaV3_7G030960	Bhi09G000542	Wax gourd	cucwgoB730

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G030960	Cucumber (Chinese Long) v3	cuccucB154
CsaV3_7G030960	Silver-seed gourd	carcucB0390
CsaV3_7G030960	Silver-seed gourd	carcucB0804
CsaV3_7G030960	Cucumber (Gy14) v2	cgybcucB154
CsaV3_7G030960	Cucurbita maxima (Rimu)	cmacucB0317
CsaV3_7G030960	Cucurbita maxima (Rimu)	cmacucB0462
CsaV3_7G030960	Cucurbita maxima (Rimu)	cmacucB0595
CsaV3_7G030960	Cucurbita moschata (Rifu)	cmocucB0312
CsaV3_7G030960	Cucurbita moschata (Rifu)	cmocucB0455
CsaV3_7G030960	Cucurbita moschata (Rifu)	cmocucB0582
CsaV3_7G030960	Cucurbita pepo (Zucchini)	cpecucB0188
CsaV3_7G030960	Cucurbita pepo (Zucchini)	cpecucB0726
CsaV3_7G030960	Cucurbita pepo (Zucchini)	cpecucB0789
CsaV3_7G030960	Wild cucumber (PI 183967)	cpicucB191
CsaV3_7G030960	Bottle gourd (USVL1VR-Ls)	cuclsiB550
CsaV3_7G030960	Melon (DHL92) v3.5.1	cucmeB570
CsaV3_7G030960	Melon (DHL92) v3.6.1	cucmedB556
CsaV3_7G030960	Watermelon (Charleston Gray)	cucwcgB555
CsaV3_7G030960	Watermelon (97103) v1	cucwmB601
CsaV3_7G030960	Watermelon (97103) v2	cucwmbB536
CsaV3_7G030960	Watermelon (97103) v2	cucwmbB594
CsaV3_7G030960	Wax gourd	cucwgoB672